pycom04g16910

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0018505
Physical Location & Seq
Reverse (-)
19467314 .. 19469704
2391 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g16910.1

Sequence Viewer

Length: 2391 bp
ATGAATTTATCCAAATTAAAGCCGCTAACTTTAGCCGCGAAATCGACTTTGAATCCCAAACCCATGTCGAAGCCAAGCATAAATCTCTCAATCCTGGAAACCCATTTGCCGAAATGCCGAAATCTCAAGCAATTCAATCCAATACTCTCTCAGATGATCCTTACCGGCTTCATCAATGACACATATGCCGCAAGCAGAATCCTCAAGTTCTGCACCGACTCACACCTCGTCCACGTCGATTTCTCCCTGAAAATCTTCGATCGAATCGACGACGCAAATGGGTTTATTTGGAACACCATGATGAGAGCTTACGTACAGAGAAACCGTCCTCAAAAGGCTTTGAAGCTTTATAAACTGATGCTGGAGAAGAATGCCGGTCCTGACCATTACACTTACCCGCTTTTAATGCAAGCCTGCGCTATTCGGGTTTCGGGTTTTGAAGGAAAACAGATACATGGTCATGTTTTCAGGACGGGTTTTGATTCGGATGTTTATGTTCAGAACACGTTGATCAATATGTATGCTGTTTGTGATAACATGGGGGACGCACGTAAGTTGTTTGATGAAATTCCTGTGTTGAATTCGGTGGCTTGGAATTCGATTCTGGCGGGGTATGTGAGGGTGGGGGATGTGGAGAAGGCGAAGTTTGTATATGATCAGATGCCGGAGAGGAACACCATTGCTTCGAATTCTATGATCGTGTTGTTTGGCAGGACAGGTTGCGTGAATGAGGCTTGCCAGTTGTTCGAGGAAATACCGGAGAAAGATATGGTTTCATGGAGCGCGTTGATTTCTTGTTATGAGCAGAATGAGATGCATGAGGAGGCTTTGGCTAAGTTTCTGGAAATGGTTGCCAATGGAGTTATGGTGGATGAGGTTGTGGTTGTCACCGTTCTTTCAGCATGTGCCAACTTGTTAGCTGTCCAGACAGGGAAATTGATCCATGGATTAGTAGTGAAAATTGGAATTGAAACTTATGTCAATCTTCAAAATGCGTTTATTCACATGTATTCGAGTTGTGGGGAAATAATGGCTGCGCAAAAACTGTTCAATGCAGCCTACAACTTGGATCAGATATCATGGAACTCAATGATATCAGGCTACTTGAAATGTGGTCTAGTCGAAAACGCTAGGACTTTATTTGATTCCATGCCTGAGAAGGATATCGTGTCTTGGAGTGCAATGATATCAGGTTATGCTCAACAAGACCGGTTCTCAGAAACTTTGGCATTGTTTCAGGAGATGCAGCTTCTTGGAATCAGGCCTGATGAGACCACTTTGGTGAGTGTTGTATCAGCTTGCACTCAATTGGCCGCCCTAGACTTAGGCCAGTGGATTCATGCTTATATTAGGAAAAATGGTCTCAAGATTAATGTCTTTTTGGGCACAACCCTTATAAACATGTACATGAAATGTGGGTGCGTGGAAAACGCTTTGGAGGTTTTTGAGGGGACTTCAGAAAAGGGAGTTTCTTCTTGGAATGCTCTTATTCTTGGGTTGGCGATGAATGGCTTGGTGGAGAAGTCGCTTGAAACATTTTCAGAGATGAAGAAATGTGGTGTGGCACCTAATGAGATAACCTTTATGGGAGTTCTTGGAGCTTGTCGACACATGGGGTTAGTAGATGAGGGGCGTCGACATTTTGATTCTATGGTCCAAGAACACAAGATAGAACGCAATGTTAAGCATTACGGATGCATGGTTGATCTTTTGGGACGTGCGGGTATGCTCAAGGAGGCAGAGGAACTCATTGAGAGTATGCCTATGATGCCGGATGTTGCTACTTGGGGTGCCTTAATAGGGGCCTGTAAGAAACACGGAGACCATGATAGGGGCGAGAGGATAGGAAGAAAGCTCATTGAGCTAGAGCCTGACCATGACGGGTTCCACGTGTTGTTGTCCAATATATGTGCTTCAAAAGGTAACTGGGATGATGTTCATGAGATTAGGGGAATAATGATGCAAAATGGGGTTGTAAAGACTCCGGGTTGTAGCATGATTGAAGCAGACGGTGTAGTTCATGAATTTCTAGCAGGAGATAAGAAACACCCTCGAATAAAAGAGATCGACGCTATGTTGGATGAAATAGCTAAGAGATTGAAGAAGGAAGGTTACGCACCAGATACGAATGAGGTTTCCTTTGACATTGATGATGAAGAGAAGGAAACCGCTCTGTCCAGGCATAGTGAGAAACTCGCAATTGCGTTTGGGCTTATCGCTATCAGTCCACCATCACCTATACGAATAATGAAGAATTTGCGAATATGTAATGATTGTCACATGGCAGCAAAGTTGATCTCAAAAGCTTTTGATCGTGATATTGTGGTGAGGGATAGGCACCTCTTTCACCACTTTAAGCAGGGATCTTGCTCTTGCAATGATTTCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

797

Amino Acids

89.22

Weight (kDa)

6.08

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 95 - 140 1.4e-11 PPR repeat family
PPR PF01535 96 - 124 1.3e-06 PPR repeat
PPR_2 PF13041 194 - 225 1e-05 PPR repeat family
PPR PF01535 359 - 389 9.4e-08 PPR repeat
PPR_2 PF13041 387 - 434 7.3e-09 PPR repeat family
PPR PF01535 390 - 420 5.1e-06 PPR repeat
PPR_2 PF13041 489 - 535 1.1e-09 PPR repeat family
PPR PF01535 492 - 521 1.3e-06 PPR repeat
E_motif PF20431 606 - 668 9.7e-15 E motif
Eplus_motif PF20430 673 - 700 1.8e-08 E+ motif
DYW_deaminase PF14432 704 - 796 7.2e-38 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018505)

Species Orthologous Gene IDs
malus_domestica MD04G1191500.v1.1
prunus_persica Prupe.6G310100_v2.0.a1
pyrus_communis pycom04g16910
rosa_chinensis RchiOBHm_Chr3g0457551
rosa_laevigata RLG00000025211
rosa_multiflora Rmu_sc0007404.1_g000005
rosa_roxburghii Rroxscaffold_6G00421740
rosa_rugosa Rorug03G0021300
rosa_samantha Rh3DG085600
rosa_wichuraiana Rw3G007030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 351, 1397
Acc16I TGCGCA 1 cut(s) 1038
AccB1I GGYRCC 3 cut(s) 1564, 1790, 2337
AccBSI CCGCTC 1 cut(s) 2171
AccI GTMKAC 2 cut(s) 1606, 1636
AccII CGCG 2 cut(s) 38, 785
AciI CCGC 8 cut(s) 23, 36, 189, 398, 608, 1314, 1721, 2169
AclWI GGATC 4 cut(s) 151, 934, 1077, 2371
AcoI YGGCCR 1 cut(s) 1311
AcsI RAATTY 7 cut(s) 4, 567, 580, 595, 688, 2024, 2254
AcuI CTGAAG 1 cut(s) 1440
AcvI CACGTG 1 cut(s) 1891
AcyI GRCGYC 1 cut(s) 1633
AfaI GTAC 2 cut(s) 315, 1406
AfiI CCNNNNNNNGG 2 cut(s) 1800, 1831
AflIII ACRYGT 4 cut(s) 504, 1005, 1401, 1890
AgeI ACCGGT 1 cut(s) 1209
AjiI CACGTC 2 cut(s) 235, 1718
AjnI CCWGG 2 cut(s) 93, 2177
AleI CACNNNNGTG 1 cut(s) 1280
Alw26I GTCTC 3 cut(s) 1265, 1367, 1815
AlwI GGATC 4 cut(s) 151, 934, 1077, 2371
AoxI GGCC 4 cut(s) 1262, 1311, 1327, 1803
ApeKI GCWGC 4 cut(s) 1034, 1055, 1246, 2285
ApoI RAATTY 7 cut(s) 4, 567, 580, 595, 688, 2024, 2254
AseI ATTAAT 1 cut(s) 1371
AsiGI ACCGGT 1 cut(s) 1209
Asp700I GAANNNNTTC 1 cut(s) 254
AspLEI GCGC 3 cut(s) 419, 785, 1039
AspS9I GGNCC 3 cut(s) 377, 1654, 1803
AsuC2I CCSGG 1 cut(s) 1986
AsuHPI GGTGA 5 cut(s) 880, 1294, 2226, 2338, 2339
AsuII TTCGAA 1 cut(s) 686
AvaII GGWCC 2 cut(s) 377, 1654
BaeGI GKGCMC 1 cut(s) 1388
BanI GGYRCC 3 cut(s) 1564, 1790, 2337
BarI GAAGNNNNNNTAC 2 cut(s) 2096, 2128
BbrPI CACGTG 1 cut(s) 1891
BbvI GCAGC 4 cut(s) 1021, 1067, 1258, 2297
BccI CCATC 1 cut(s) 2239
BciT130I CCWGG 2 cut(s) 95, 2179
BclI TGATCA 2 cut(s) 510, 655
BcnI CCSGG 1 cut(s) 1986
BcoDI GTCTC 3 cut(s) 1265, 1367, 1815
BfaI CTAG 5 cut(s) 1118, 1131, 1319, 1865, 2030
BisI GCNGC 8 cut(s) 23, 36, 189, 1035, 1056, 1247, 1314, 2286
BlsI GCNGC 8 cut(s) 24, 37, 190, 1036, 1057, 1248, 1315, 2287
Bme1390I CCNGG 3 cut(s) 95, 1986, 2179
Bme18I GGWCC 2 cut(s) 377, 1654
BmgBI CACGTC 2 cut(s) 235, 1718
BmgT120I GGNCC 3 cut(s) 377, 1654, 1803
BmiI GGNNCC 5 cut(s) 1566, 1792, 1804, 1886, 2339
BmrFI CCNGG 3 cut(s) 95, 1986, 2179
BmrI ACTGGG 1 cut(s) 1936
BmsI GCATC 7 cut(s) 348, 651, 804, 1233, 1685, 1758, 1950
BmuI ACTGGG 1 cut(s) 1936
BpmI CTGGAG 1 cut(s) 383
Bpu14I TTCGAA 1 cut(s) 686
BpuEI CTTGAG 4 cut(s) 110, 188, 1349, 1715
BpuMI CCSGG 1 cut(s) 1986
BsaAI YACGTR 3 cut(s) 313, 551, 1891
BsaHI GRCGYC 1 cut(s) 1633
BsaI GGTCTC 3 cut(s) 1265, 1367, 1815
BsaJI CCNNGG 1 cut(s) 943
BsaWI WCCGGW 2 cut(s) 757, 1209
BsaXI ACNNNNNCTCC 2 cut(s) 852, 882
Bsc4I CCNNNNNNNGG 2 cut(s) 1800, 1831
Bse118I RCCGGY 3 cut(s) 164, 374, 1209
Bse1I ACTGG 3 cut(s) 739, 1330, 1931
Bse3DI GCAATG 4 cut(s) 678, 1188, 1684, 2383
BseBI CCWGG 2 cut(s) 95, 2179
BseDI CCNNGG 1 cut(s) 943
BseGI GGATG 7 cut(s) 493, 634, 877, 1700, 1780, 1936, 2086
BseLI CCNNNNNNNGG 2 cut(s) 1800, 1831
BseMI GCAATG 4 cut(s) 678, 1188, 1684, 2383
BseMII CTCAG 3 cut(s) 164, 1146, 1230
BseNI ACTGG 3 cut(s) 739, 1330, 1931
BseRI GAGGAG 1 cut(s) 836
BseSI GKGCMC 1 cut(s) 1388
BseXI GCAGC 4 cut(s) 1021, 1067, 1258, 2297
BsgI GTGCAG 1 cut(s) 196
Bsh1236I CGCG 2 cut(s) 38, 785
Bsh1285I CGRYCG 1 cut(s) 262
BshFI GGCC 4 cut(s) 1264, 1313, 1329, 1805
BshNI GGYRCC 3 cut(s) 1564, 1790, 2337
BshTI ACCGGT 1 cut(s) 1209
BsiEI CGRYCG 1 cut(s) 262
BsiSI CCGG 7 cut(s) 165, 375, 665, 758, 1210, 1772, 1985
BslFI GGGAC 3 cut(s) 557, 1465, 1728
BslI CCNNNNNNNGG 2 cut(s) 1800, 1831
BsmAI GTCTC 3 cut(s) 1265, 1367, 1815
BsmFI GGGAC 3 cut(s) 557, 1465, 1728
BsmI GAATGC 2 cut(s) 376, 1486
BsnI GGCC 4 cut(s) 1264, 1313, 1329, 1805
Bso31I GGTCTC 3 cut(s) 1265, 1367, 1815
Bsp119I TTCGAA 1 cut(s) 686
Bsp1286I GDGCHC 1 cut(s) 1388
Bsp1407I TGTACA 1 cut(s) 1404
Bsp19I CCATGG 1 cut(s) 943
BspACI CCGC 8 cut(s) 23, 36, 189, 398, 608, 1314, 1721, 2169
BspANI GGCC 4 cut(s) 1264, 1313, 1329, 1805
BspCNI CTCAG 3 cut(s) 163, 1147, 1229
BspFNI CGCG 2 cut(s) 38, 785
BspHI TCATGA 2 cut(s) 1939, 2020
BspLI GGNNCC 5 cut(s) 1566, 1792, 1804, 1886, 2339
BspPI GGATC 4 cut(s) 151, 934, 1077, 2371
BspT104I TTCGAA 1 cut(s) 686
BspT107I GGYRCC 3 cut(s) 1564, 1790, 2337
BspTNI GGTCTC 3 cut(s) 1265, 1367, 1815
BsrBI CCGCTC 1 cut(s) 2171
BsrDI GCAATG 4 cut(s) 678, 1188, 1684, 2383
BsrFI RCCGGY 3 cut(s) 164, 374, 1209
BsrGI TGTACA 1 cut(s) 1404
BsrI ACTGG 3 cut(s) 739, 1330, 1931
BssAI RCCGGY 3 cut(s) 164, 374, 1209
BssECI CCNNGG 1 cut(s) 943
BssNI GRCGYC 1 cut(s) 1633
BssT1I CCWWGG 1 cut(s) 943
Bst2UI CCWGG 2 cut(s) 95, 2179
Bst4CI ACNGT 4 cut(s) 326, 892, 1047, 2012
Bst6I CTCTTC 1 cut(s) 2151
BstACI GRCGYC 1 cut(s) 1633
BstAUI TGTACA 1 cut(s) 1404
BstBAI YACGTR 3 cut(s) 313, 551, 1891
BstBI TTCGAA 1 cut(s) 686
BstC8I GCNNGC 5 cut(s) 193, 411, 415, 736, 1300
BstDEI CTNAG 6 cut(s) 150, 834, 1155, 1216, 1324, 2091
BstDSI CCRYGG 1 cut(s) 943
BstF5I GGATG 7 cut(s) 493, 634, 877, 1700, 1780, 1936, 2086
BstFNI CGCG 2 cut(s) 38, 785
BstHHI GCGC 3 cut(s) 419, 785, 1039
BstMAI GTCTC 3 cut(s) 1265, 1367, 1815
BstMCI CGRYCG 1 cut(s) 262
BstMWI GCNNNNNNNGC 3 cut(s) 406, 1768, 1861
BstNI CCWGG 2 cut(s) 95, 2179
BstNSI RCATGY 3 cut(s) 906, 1009, 1405
BstSCI CCNGG 3 cut(s) 93, 1984, 2177
BstSLI GKGCMC 1 cut(s) 1388
BstSNI TACGTA 1 cut(s) 313
BstUI CGCG 2 cut(s) 38, 785
BstV1I GCAGC 4 cut(s) 1021, 1067, 1258, 2297
BstX2I RGATCY 1 cut(s) 2363
BstYI RGATCY 1 cut(s) 2363
BsuRI GGCC 4 cut(s) 1264, 1313, 1329, 1805
BtgI CCRYGG 1 cut(s) 943
BtgZI GCGATG 1 cut(s) 1517
BtrI CACGTC 2 cut(s) 235, 1718
BtsCI GGATG 7 cut(s) 493, 634, 877, 1700, 1780, 1936, 2086
BtsIMutI CAGTG 1 cut(s) 1337
Cac8I GCNNGC 5 cut(s) 193, 411, 415, 736, 1300
CciI TCATGA 2 cut(s) 1939, 2020
CfoI GCGC 3 cut(s) 419, 785, 1039
Cfr10I RCCGGY 3 cut(s) 164, 374, 1209
Cfr13I GGNCC 3 cut(s) 377, 1654, 1803
CseI GACGC 4 cut(s) 281, 554, 1622, 2078
Csp6I GTAC 2 cut(s) 314, 1405
CspAI ACCGGT 1 cut(s) 1209
CviQI GTAC 2 cut(s) 314, 1405
DdeI CTNAG 6 cut(s) 150, 834, 1155, 1216, 1324, 2091
EaeI YGGCCR 1 cut(s) 1311
Eam1104I CTCTTC 1 cut(s) 2151
EarI CTCTTC 1 cut(s) 2151
Eco105I TACGTA 1 cut(s) 313
Eco130I CCWWGG 1 cut(s) 943
Eco147I AGGCCT 1 cut(s) 1264
Eco31I GGTCTC 3 cut(s) 1265, 1367, 1815
Eco32I GATATC 4 cut(s) 1077, 1095, 1165, 1188
Eco47I GGWCC 2 cut(s) 377, 1654
Eco57I CTGAAG 1 cut(s) 1440
Eco72I CACGTG 1 cut(s) 1891
EcoO109I RGGNCCY 1 cut(s) 1803
EcoRI GAATTC 3 cut(s) 580, 595, 688
EcoRII CCWGG 2 cut(s) 93, 2177
EcoRV GATATC 4 cut(s) 1077, 1095, 1165, 1188
EcoT14I CCWWGG 1 cut(s) 943
EcoT22I ATGCAT 2 cut(s) 819, 1700
ErhI CCWWGG 1 cut(s) 943
FaqI GGGAC 3 cut(s) 557, 1465, 1728
FauI CCCGC 3 cut(s) 405, 601, 1714
FauNDI CATATG 1 cut(s) 184
FbaI TGATCA 2 cut(s) 510, 655
FblI GTMKAC 2 cut(s) 1606, 1636
Fnu4HI GCNGC 8 cut(s) 23, 36, 189, 1035, 1056, 1247, 1314, 2286
FokI GGATG 7 cut(s) 500, 641, 884, 1707, 1787, 1943, 2093
Fsp4HI GCNGC 8 cut(s) 23, 36, 189, 1035, 1056, 1247, 1314, 2286
FspBI CTAG 5 cut(s) 1118, 1131, 1319, 1865, 2030
FspI TGCGCA 1 cut(s) 1038
GlaI GCGC 3 cut(s) 418, 784, 1038
GluI GCNGC 8 cut(s) 23, 36, 189, 1035, 1056, 1247, 1314, 2286
GsuI CTGGAG 1 cut(s) 383
HaeIII GGCC 4 cut(s) 1264, 1313, 1329, 1805
HapII CCGG 7 cut(s) 165, 375, 665, 758, 1210, 1772, 1985
HgaI GACGC 4 cut(s) 281, 554, 1622, 2078
HhaI GCGC 3 cut(s) 419, 785, 1039
Hin1I GRCGYC 1 cut(s) 1633
Hin6I GCGC 3 cut(s) 417, 783, 1037
HinP1I GCGC 3 cut(s) 417, 783, 1037
HincII GTYRAC 2 cut(s) 1607, 1637
HindII GTYRAC 2 cut(s) 1607, 1637
HindIII AAGCTT 2 cut(s) 344, 2304
HpaII CCGG 7 cut(s) 165, 375, 665, 758, 1210, 1772, 1985
HphI GGTGA 5 cut(s) 880, 1294, 2226, 2338, 2339
Hpy166II GTNNAC 4 cut(s) 232, 1607, 1637, 2228
Hpy188I TCNGA 8 cut(s) 153, 487, 501, 660, 1074, 1219, 1459, 1543
Hpy188III TCNNGA 9 cut(s) 380, 469, 842, 925, 1238, 1366, 1940, 2021, 2315
Hpy8I GTNNAC 4 cut(s) 232, 1607, 1637, 2228
Hpy99I CGWCG 5 cut(s) 239, 272, 275, 1638, 2072
HpyAV CCTTC 6 cut(s) 434, 631, 1153, 2098, 2102, 2155
HpyCH4III ACNGT 4 cut(s) 326, 892, 1047, 2012
HpyCH4IV ACGT 6 cut(s) 234, 312, 506, 550, 1717, 1890
HpyF10VI GCNNNNNNNGC 3 cut(s) 406, 1768, 1861
HpyF3I CTNAG 6 cut(s) 150, 834, 1155, 1216, 1324, 2091
HpySE526I ACGT 6 cut(s) 234, 312, 506, 550, 1717, 1890
Hsp92I GRCGYC 1 cut(s) 1633
HspAI GCGC 3 cut(s) 417, 783, 1037
Ksp22I TGATCA 2 cut(s) 510, 655
LmnI GCTCC 2 cut(s) 780, 1598
Lsp1109I GCAGC 4 cut(s) 1021, 1067, 1258, 2297
LweI GCATC 7 cut(s) 348, 651, 804, 1233, 1685, 1758, 1950
MaeI CTAG 5 cut(s) 1118, 1131, 1319, 1865, 2030
MaeII ACGT 6 cut(s) 234, 312, 506, 550, 1717, 1890
MaeIII GTNAC 4 cut(s) 886, 1922, 2111, 2276
MbiI CCGCTC 1 cut(s) 2171
MboII GAAGA 9 cut(s) 247, 379, 977, 1464, 1561, 1860, 2113, 2168, 2263
MfeI CAATTG 2 cut(s) 1307, 2199
MflI RGATCY 1 cut(s) 2363
MhlI GDGCHC 1 cut(s) 1388
MlyI GAGTC 2 cut(s) 212, 1975
MmeI TCCRAC 1 cut(s) 2058
Mph1103I ATGCAT 2 cut(s) 819, 1700
MroXI GAANNNNTTC 1 cut(s) 254
MseI TTAA 6 cut(s) 17, 404, 1371, 1683, 1796, 2355
MslI CAYNNNNRTG 4 cut(s) 299, 459, 1280, 1406
MspI CCGG 7 cut(s) 165, 375, 665, 758, 1210, 1772, 1985
MspR9I CCNGG 3 cut(s) 95, 1986, 2179
MunI CAATTG 2 cut(s) 1307, 2199
Mva1269I GAATGC 2 cut(s) 376, 1486
MvaI CCWGG 2 cut(s) 95, 2179
MvnI CGCG 2 cut(s) 38, 785
MwoI GCNNNNNNNGC 3 cut(s) 406, 1768, 1861
NciI CCSGG 1 cut(s) 1986
NcoI CCATGG 1 cut(s) 943
NdeI CATATG 1 cut(s) 184
NlaIV GGNNCC 5 cut(s) 1566, 1792, 1804, 1886, 2339
NmuCI GTSAC 2 cut(s) 886, 2276
NsbI TGCGCA 1 cut(s) 1038
NsiI ATGCAT 2 cut(s) 819, 1700
NspI RCATGY 3 cut(s) 906, 1009, 1405
NspV TTCGAA 1 cut(s) 686
OliI CACNNNNGTG 1 cut(s) 1280
PagI TCATGA 2 cut(s) 1939, 2020
PceI AGGCCT 1 cut(s) 1264
PciI ACATGT 2 cut(s) 1005, 1401
PcsI WCGNNNNNNNCGW 3 cut(s) 234, 264, 1887
PctI GAATGC 2 cut(s) 376, 1486
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 9 cut(s) 52, 198, 264, 482, 601, 1145, 1257, 1336, 1646
PfoI TCCNGGA 1 cut(s) 93
PinAI ACCGGT 1 cut(s) 1209
PkrI GCNGC 8 cut(s) 24, 37, 190, 1036, 1057, 1248, 1315, 2287
Ple19I CGATCG 1 cut(s) 262
PleI GAGTC 2 cut(s) 212, 1975
PmaCI CACGTG 1 cut(s) 1891
PmlI CACGTG 1 cut(s) 1891
PpsI GAGTC 2 cut(s) 212, 1975
Ppu21I YACGTR 3 cut(s) 313, 551, 1891
PscI ACATGT 2 cut(s) 1005, 1401
PshBI ATTAAT 1 cut(s) 1371
PsiI TTATAA 2 cut(s) 351, 1397
Psp6I CCWGG 2 cut(s) 93, 2177
PspCI CACGTG 1 cut(s) 1891
PspGI CCWGG 2 cut(s) 93, 2177
PspN4I GGNNCC 5 cut(s) 1566, 1792, 1804, 1886, 2339
PspPI GGNCC 3 cut(s) 377, 1654, 1803
PsuI RGATCY 1 cut(s) 2363
PvuI CGATCG 1 cut(s) 262
RsaI GTAC 2 cut(s) 315, 1406
RsaNI GTAC 2 cut(s) 314, 1405
RseI CAYNNNNRTG 4 cut(s) 299, 459, 1280, 1406
SalI GTCGAC 2 cut(s) 1605, 1635
SaqAI TTAA 6 cut(s) 17, 404, 1371, 1683, 1796, 2355
SatI GCNGC 8 cut(s) 23, 36, 189, 1035, 1056, 1247, 1314, 2286
Sau96I GGNCC 3 cut(s) 377, 1654, 1803
SchI GAGTC 2 cut(s) 212, 1975
ScrFI CCNGG 3 cut(s) 95, 1986, 2179
SduI GDGCHC 1 cut(s) 1388
SfaNI GCATC 7 cut(s) 348, 651, 804, 1233, 1685, 1758, 1950
SfuI TTCGAA 1 cut(s) 686
SinI GGWCC 2 cut(s) 377, 1654
SmiMI CAYNNNNRTG 4 cut(s) 299, 459, 1280, 1406
SmlI CTYRAG 4 cut(s) 125, 203, 1364, 1730
SmoI CTYRAG 4 cut(s) 125, 203, 1364, 1730
SnaBI TACGTA 1 cut(s) 313
SseBI AGGCCT 1 cut(s) 1264
SsiI CCGC 8 cut(s) 23, 36, 189, 398, 608, 1314, 1721, 2169
SspMI CTAG 5 cut(s) 1118, 1131, 1319, 1865, 2030
StuI AGGCCT 1 cut(s) 1264
StyD4I CCNGG 3 cut(s) 93, 1984, 2177
StyI CCWWGG 1 cut(s) 943
TaaI ACNGT 4 cut(s) 326, 892, 1047, 2012
TaiI ACGT 6 cut(s) 237, 315, 509, 553, 1720, 1893
TatI WGTACW 1 cut(s) 1404
TauI GCSGC 4 cut(s) 25, 38, 191, 1316
TfiI GAWTC 9 cut(s) 52, 198, 264, 482, 601, 1145, 1257, 1336, 1646
Tru1I TTAA 6 cut(s) 17, 404, 1371, 1683, 1796, 2355
Tru9I TTAA 6 cut(s) 17, 404, 1371, 1683, 1796, 2355
TscAI CASTG 1 cut(s) 1337
TseFI GTSAC 2 cut(s) 886, 2276
TseI GCWGC 4 cut(s) 1034, 1055, 1246, 2285
Tsp45I GTSAC 2 cut(s) 886, 2276
TspGWI ACGGA 2 cut(s) 1707, 1833
TspRI CASTG 1 cut(s) 1337
VpaK11BI GGWCC 2 cut(s) 377, 1654
VspI ATTAAT 1 cut(s) 1371
XapI RAATTY 7 cut(s) 4, 567, 580, 595, 688, 2024, 2254
XceI RCATGY 3 cut(s) 906, 1009, 1405
XcmI CCANNNNNNNNNTGG 1 cut(s) 862
XmiI GTMKAC 2 cut(s) 1606, 1636
XmnI GAANNNNTTC 1 cut(s) 254
XspI CTAG 5 cut(s) 1118, 1131, 1319, 1865, 2030
Zsp2I ATGCAT 2 cut(s) 819, 1700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.