Rorug03G0021300

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0018505
Physical Location & Seq
Reverse (-)
1737621 .. 1742032
4412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0021300.1

Sequence Viewer

Length: 1023 bp
ATGGACCAATCGGTTCTTGATGACATCATCAGCCGTCTTCTTGAAGTCCGAGGCCGACCCGGAAAGCAGGTGCAGCTATCCGAGTCCGAGATCCGACAACTCTGCTCTGCCTCTAAAGATATCTTCTTGCAACAGCCCAATTTGTTAGAGCTTGAAGCACCCATCAAGATTTGTGGTGACATACATGGTCAATACTCGGATCTCTTAAGGCTTTTTGAGTATGGCGGATTACCTCCTAATTCCAATTACTTGTTCTTGGGAGATTATGTGGATCGAGGCAAGCAAAGTTTAGAAACAATATGTCTTCTCCTTGCATACAAAATAAAGTACCCTGAGAATTTTTTCCTCTTGAGAGGAAACCATGAATGTGCTTCTATAAACCGTATATATGGATTTTATGATGAGTGTAAGAGAAGATTCAATGTGAGGCTATGGAAGACATTTACGGATTGTTTCAACTGCCTACCAGTTGCAGCCCTGATTGATGAAAAGATTCTCTGCATGCATGGGGGTCTTTCTCCTGAGCTGAATAATTTAGATCAAATTAGATCTTTACTCCGGCCAACTGATGTACCAGATACAGGTTTACTCTGTGATCTTCTCTGGTCTGATCCCAGTAAAGATGTTCAAGGTTGGGGAGGGAACGACCGGGGAGTGTCCTACACATTTGGTCCTGATACAGTGACGGAGTTTCTTGAGAAGCATGATTTGGATCTCGTTTGTCGTGCTCACCAGGTTGTGGAGGATGGGTACGAGTTATTTGCCAACCGCCAACTTGTGACAATATTTTCAGCACCTAATTATTGTGGGGAATTCGATAATGCTGGTGCCATGATGAGTGTGGATGACACATTAATGTGCTCTTTCCAAATATTAAAACCTGCAGACAAGAAAGCGAAGTTTAACTTGGGTAGCCTAACTACAGCTAAGCCTGGAAATTCTTCTACTGGTGTTTTTGGGAGCACAACTACAGCTAAGCCTAGCAATACTCCAGCAGGAGTCAAGTCCTTGATGCAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

340

Amino Acids

38.02

Weight (kDa)

5.26

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STPPase_N PF16891 6 - 52 7.9e-23 Serine-threonine protein phosphatase N-terminal domain
Metallophos PF00149 54 - 247 2.1e-52 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018505)

Species Orthologous Gene IDs
malus_domestica MD04G1191500.v1.1
prunus_persica Prupe.6G310100_v2.0.a1
pyrus_communis pycom04g16910
rosa_chinensis RchiOBHm_Chr3g0457551
rosa_laevigata RLG00000025211
rosa_multiflora Rmu_sc0007404.1_g000005
rosa_roxburghii Rroxscaffold_6G00421740
rosa_rugosa Rorug03G0021300
rosa_samantha Rh3DG085600
rosa_wichuraiana Rw3G007030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 58
Acc36I ACCTGC 2 cut(s) 58, 889
AccB1I GGYRCC 1 cut(s) 827
AccB7I CCANNNNNTGG 1 cut(s) 739
AciI CCGC 2 cut(s) 225, 769
AclWI GGATC 5 cut(s) 85, 207, 279, 605, 720
AcoI YGGCCR 1 cut(s) 560
AcsI RAATTY 3 cut(s) 337, 812, 937
AfaI GTAC 3 cut(s) 329, 573, 752
AfiI CCNNNNNNNGG 2 cut(s) 581, 739
AflII CTTAAG 1 cut(s) 205
AgsI TTSAA 5 cut(s) 44, 155, 421, 457, 629
AjnI CCWGG 2 cut(s) 732, 931
AjuI GAANNNNNNNTTGG 6 cut(s) 236, 268, 692, 724, 890, 922
AluBI AGCT 5 cut(s) 76, 151, 526, 926, 974
AluI AGCT 5 cut(s) 76, 151, 526, 926, 974
Alw21I GWGCWC 3 cut(s) 730, 863, 965
AlwI GGATC 5 cut(s) 85, 207, 279, 605, 720
AoxI GGCC 2 cut(s) 52, 560
ApeKI GCWGC 2 cut(s) 73, 473
ApoI RAATTY 3 cut(s) 337, 812, 937
AseI ATTAAT 1 cut(s) 854
Asp700I GAANNNNTTC 3 cut(s) 341, 492, 940
AspS9I GGNCC 2 cut(s) 4, 671
AsuC2I CCSGG 2 cut(s) 60, 650
AsuHPI GGTGA 2 cut(s) 188, 722
AvaII GGWCC 2 cut(s) 4, 671
BaeI ACNNNNGTAYC 2 cut(s) 555, 588
BanI GGYRCC 1 cut(s) 827
BbsI GAAGAC 3 cut(s) 29, 296, 443
Bbv12I GWGCWC 3 cut(s) 730, 863, 965
BbvI GCAGC 2 cut(s) 85, 485
BccI CCATC 2 cut(s) 170, 740
BceAI ACGGC 1 cut(s) 18
BcgI CGANNNNNNTGC 4 cut(s) 84, 118, 743, 777
BciT130I CCWGG 2 cut(s) 734, 933
BcnI CCSGG 2 cut(s) 60, 650
BfaI CTAG 1 cut(s) 981
BfmI CTRYAG 3 cut(s) 882, 921, 969
BfrI CTTAAG 1 cut(s) 205
BfuAI ACCTGC 2 cut(s) 58, 889
BglII AGATCT 1 cut(s) 548
BisI GCNGC 2 cut(s) 74, 474
BlpI GCTNAGC 2 cut(s) 927, 975
BlsI GCNGC 2 cut(s) 75, 475
Bme1390I CCNGG 4 cut(s) 60, 650, 734, 933
Bme18I GGWCC 2 cut(s) 4, 671
BmgT120I GGNCC 2 cut(s) 4, 671
BmiI GGNNCC 1 cut(s) 829
BmrFI CCNGG 4 cut(s) 60, 650, 734, 933
BmrI ACTGGG 1 cut(s) 609
BmsI GCATC 1 cut(s) 1002
BmuI ACTGGG 1 cut(s) 609
BpiI GAAGAC 3 cut(s) 29, 296, 443
BpmI CTGGAG 1 cut(s) 975
Bpu10I CCTNAGC 1 cut(s) 522
Bpu1102I GCTNAGC 2 cut(s) 927, 975
BpuEI CTTGAG 2 cut(s) 370, 716
BpuMI CCSGG 2 cut(s) 60, 650
BsaBI GATNNNNATC 1 cut(s) 711
BsaJI CCNNGG 2 cut(s) 49, 649
BsaXI ACNNNNNCTCC 4 cut(s) 252, 282, 734, 764
Bsc4I CCNNNNNNNGG 2 cut(s) 581, 739
Bse1I ACTGG 3 cut(s) 467, 615, 952
Bse8I GATNNNNATC 1 cut(s) 711
BseBI CCWGG 2 cut(s) 734, 933
BseDI CCNNGG 2 cut(s) 49, 649
BseGI GGATG 2 cut(s) 751, 850
BseJI GATNNNNATC 1 cut(s) 711
BseLI CCNNNNNNNGG 2 cut(s) 581, 739
BseMII CTCAG 2 cut(s) 324, 513
BseNI ACTGG 3 cut(s) 467, 615, 952
BseXI GCAGC 2 cut(s) 85, 485
BsgI GTGCAG 1 cut(s) 92
Bsh1285I CGRYCG 1 cut(s) 649
BshFI GGCC 2 cut(s) 54, 562
BshNI GGYRCC 1 cut(s) 827
BsiEI CGRYCG 1 cut(s) 649
BsiHKAI GWGCWC 3 cut(s) 730, 863, 965
BsiSI CCGG 3 cut(s) 60, 559, 649
BslI CCNNNNNNNGG 2 cut(s) 581, 739
BsnI GGCC 2 cut(s) 54, 562
Bsp1286I GDGCHC 3 cut(s) 730, 863, 965
Bsp143I GATC 8 cut(s) 90, 199, 271, 538, 548, 595, 610, 712
Bsp1720I GCTNAGC 2 cut(s) 927, 975
BspACI CCGC 2 cut(s) 225, 769
BspANI GGCC 2 cut(s) 54, 562
BspCNI CTCAG 2 cut(s) 325, 514
BspLI GGNNCC 1 cut(s) 829
BspMAI CTGCAG 1 cut(s) 886
BspMI ACCTGC 2 cut(s) 58, 889
BspPI GGATC 5 cut(s) 85, 207, 279, 605, 720
BspT107I GGYRCC 1 cut(s) 827
BspTI CTTAAG 1 cut(s) 205
BsrI ACTGG 3 cut(s) 467, 615, 952
BssECI CCNNGG 2 cut(s) 49, 649
BssMI GATC 8 cut(s) 90, 199, 271, 538, 548, 595, 610, 712
Bst2UI CCWGG 2 cut(s) 734, 933
Bst4CI ACNGT 2 cut(s) 383, 682
BstAFI CTTAAG 1 cut(s) 205
BstC8I GCNNGC 2 cut(s) 281, 503
BstDEI CTNAG 4 cut(s) 333, 522, 927, 975
BstF5I GGATG 2 cut(s) 751, 850
BstKTI GATC 8 cut(s) 93, 202, 274, 541, 551, 598, 613, 715
BstMBI GATC 8 cut(s) 90, 199, 271, 538, 548, 595, 610, 712
BstMCI CGRYCG 1 cut(s) 649
BstMWI GCNNNNNNNGC 1 cut(s) 73
BstNI CCWGG 2 cut(s) 734, 933
BstNSI RCATGY 1 cut(s) 505
BstSCI CCNGG 4 cut(s) 58, 648, 732, 931
BstSFI CTRYAG 3 cut(s) 882, 921, 969
BstV1I GCAGC 2 cut(s) 85, 485
BstV2I GAAGAC 3 cut(s) 29, 296, 443
BstX2I RGATCY 4 cut(s) 90, 199, 548, 712
BstYI RGATCY 4 cut(s) 90, 199, 548, 712
BsuRI GGCC 2 cut(s) 54, 562
BtsCI GGATG 2 cut(s) 751, 850
BtsIMutI CAGTG 1 cut(s) 687
BveI ACCTGC 2 cut(s) 58, 889
Cac8I GCNNGC 2 cut(s) 281, 503
Cfr13I GGNCC 2 cut(s) 4, 671
CsiI ACCWGGT 1 cut(s) 732
Csp6I GTAC 3 cut(s) 328, 572, 751
CspCI CAANNNNNGTGG 2 cut(s) 154, 189
CviAII CATG 6 cut(s) 185, 362, 502, 506, 704, 832
CviQI GTAC 3 cut(s) 328, 572, 751
DdeI CTNAG 4 cut(s) 333, 522, 927, 975
DpnI GATC 8 cut(s) 92, 201, 273, 540, 550, 597, 612, 714
DpnII GATC 8 cut(s) 90, 199, 271, 538, 548, 595, 610, 712
EaeI YGGCCR 1 cut(s) 560
EciI GGCGGA 1 cut(s) 240
Eco32I GATATC 1 cut(s) 121
Eco47I GGWCC 2 cut(s) 4, 671
EcoRI GAATTC 1 cut(s) 812
EcoRII CCWGG 2 cut(s) 732, 931
EcoRV GATATC 1 cut(s) 121
EcoT22I ATGCAT 1 cut(s) 507
FaeI CATG 6 cut(s) 188, 365, 505, 509, 707, 835
FalI AAGNNNNNCTT 2 cut(s) 890, 922
FatI CATG 6 cut(s) 184, 361, 501, 505, 703, 831
Fnu4HI GCNGC 2 cut(s) 74, 474
FokI GGATG 2 cut(s) 758, 857
Fsp4HI GCNGC 2 cut(s) 74, 474
FspBI CTAG 1 cut(s) 981
GluI GCNGC 2 cut(s) 74, 474
GsuI CTGGAG 1 cut(s) 975
HaeIII GGCC 2 cut(s) 54, 562
HapII CCGG 3 cut(s) 60, 559, 649
Hin1II CATG 6 cut(s) 188, 365, 505, 509, 707, 835
HinfI GANTC 4 cut(s) 83, 417, 493, 999
HpaII CCGG 3 cut(s) 60, 559, 649
HphI GGTGA 2 cut(s) 188, 722
Hpy166II GTNNAC 1 cut(s) 587
Hpy188I TCNGA 6 cut(s) 50, 82, 88, 95, 199, 610
Hpy188III TCNNGA 7 cut(s) 17, 41, 166, 349, 521, 674, 695
Hpy8I GTNNAC 1 cut(s) 587
HpyCH4III ACNGT 2 cut(s) 383, 682
HpyCH4V TGCA 8 cut(s) 73, 130, 314, 473, 501, 505, 884, 1015
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
HpyF3I CTNAG 4 cut(s) 333, 522, 927, 975
Hsp92II CATG 6 cut(s) 188, 365, 505, 509, 707, 835
Kzo9I GATC 8 cut(s) 90, 199, 271, 538, 548, 595, 610, 712
LmnI GCTCC 1 cut(s) 960
Lsp1109I GCAGC 2 cut(s) 85, 485
LweI GCATC 1 cut(s) 1002
MabI ACCWGGT 1 cut(s) 732
MaeI CTAG 1 cut(s) 981
MaeIII GTNAC 3 cut(s) 176, 682, 778
MalI GATC 8 cut(s) 92, 201, 273, 540, 550, 597, 612, 714
MboI GATC 8 cut(s) 90, 199, 271, 538, 548, 595, 610, 712
MboII GAAGA 7 cut(s) 29, 115, 296, 426, 448, 590, 933
MflI RGATCY 4 cut(s) 90, 199, 548, 712
MhlI GDGCHC 3 cut(s) 730, 863, 965
MluCI AATT 9 cut(s) 139, 238, 244, 337, 532, 543, 799, 812, 937
MlyI GAGTC 2 cut(s) 92, 1008
MmeI TCCRAC 1 cut(s) 118
Mph1103I ATGCAT 1 cut(s) 507
MroXI GAANNNNTTC 3 cut(s) 341, 492, 940
MseI TTAA 4 cut(s) 206, 854, 875, 903
MslI CAYNNNNRTG 3 cut(s) 366, 854, 856
MspCI CTTAAG 1 cut(s) 205
MspI CCGG 3 cut(s) 60, 559, 649
MspR9I CCNGG 4 cut(s) 60, 650, 734, 933
MvaI CCWGG 2 cut(s) 734, 933
MwoI GCNNNNNNNGC 1 cut(s) 73
NciI CCSGG 2 cut(s) 60, 650
NdeII GATC 8 cut(s) 90, 199, 271, 538, 548, 595, 610, 712
NlaIII CATG 6 cut(s) 188, 365, 505, 509, 707, 835
NlaIV GGNNCC 1 cut(s) 829
NmuCI GTSAC 3 cut(s) 176, 682, 778
NsiI ATGCAT 1 cut(s) 507
NspI RCATGY 1 cut(s) 505
PaeI GCATGC 1 cut(s) 505
PaqCI CACCTGC 1 cut(s) 58
PdmI GAANNNNTTC 3 cut(s) 341, 492, 940
PfeI GAWTC 2 cut(s) 417, 493
PflMI CCANNNNNTGG 1 cut(s) 739
PkrI GCNGC 2 cut(s) 75, 475
PleI GAGTC 2 cut(s) 91, 1007
PpsI GAGTC 2 cut(s) 91, 1007
PshBI ATTAAT 1 cut(s) 854
Psp6I CCWGG 2 cut(s) 732, 931
PspGI CCWGG 2 cut(s) 732, 931
PspN4I GGNNCC 1 cut(s) 829
PspPI GGNCC 2 cut(s) 4, 671
PstI CTGCAG 1 cut(s) 886
PsuI RGATCY 4 cut(s) 90, 199, 548, 712
RsaI GTAC 3 cut(s) 329, 573, 752
RsaNI GTAC 3 cut(s) 328, 572, 751
RseI CAYNNNNRTG 3 cut(s) 366, 854, 856
SaqAI TTAA 4 cut(s) 206, 854, 875, 903
SatI GCNGC 2 cut(s) 74, 474
Sau3AI GATC 8 cut(s) 90, 199, 271, 538, 548, 595, 610, 712
Sau96I GGNCC 2 cut(s) 4, 671
SchI GAGTC 2 cut(s) 92, 1008
ScrFI CCNGG 4 cut(s) 60, 650, 734, 933
SduI GDGCHC 3 cut(s) 730, 863, 965
SexAI ACCWGGT 1 cut(s) 732
SfaNI GCATC 1 cut(s) 1002
SfcI CTRYAG 3 cut(s) 882, 921, 969
SinI GGWCC 2 cut(s) 4, 671
SmiMI CAYNNNNRTG 3 cut(s) 366, 854, 856
SmlI CTYRAG 3 cut(s) 205, 349, 695
SmoI CTYRAG 3 cut(s) 205, 349, 695
SphI GCATGC 1 cut(s) 505
Sse9I AATT 9 cut(s) 139, 238, 244, 337, 532, 543, 799, 812, 937
SsiI CCGC 2 cut(s) 225, 769
SspI AATATT 2 cut(s) 786, 873
SspMI CTAG 1 cut(s) 981
StyD4I CCNGG 4 cut(s) 58, 648, 732, 931
TaaI ACNGT 2 cut(s) 383, 682
TaqI TCGA 2 cut(s) 274, 816
TasI AATT 9 cut(s) 139, 238, 244, 337, 532, 543, 799, 812, 937
TfiI GAWTC 2 cut(s) 417, 493
Tru1I TTAA 4 cut(s) 206, 854, 875, 903
Tru9I TTAA 4 cut(s) 206, 854, 875, 903
TscAI CASTG 1 cut(s) 687
TseFI GTSAC 3 cut(s) 176, 682, 778
TseI GCWGC 2 cut(s) 73, 473
Tsp45I GTSAC 3 cut(s) 176, 682, 778
TspDTI ATGAA 2 cut(s) 378, 501
TspGWI ACGGA 2 cut(s) 461, 701
TspRI CASTG 1 cut(s) 687
Van91I CCANNNNNTGG 1 cut(s) 739
Vha464I CTTAAG 1 cut(s) 205
VpaK11BI GGWCC 2 cut(s) 4, 671
VspI ATTAAT 1 cut(s) 854
XapI RAATTY 3 cut(s) 337, 812, 937
XceI RCATGY 1 cut(s) 505
XcmI CCANNNNNNNNNTGG 1 cut(s) 838
XmnI GAANNNNTTC 3 cut(s) 341, 492, 940
XspI CTAG 1 cut(s) 981
Zsp2I ATGCAT 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.