Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013611

Physical Location & Seq

Genomic Coordinates Forward (+)

3557447 .. 3558986

Gene Structure 1540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1021100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGGGCCTTCACAAGTGACCTCTCTTGTGGTCACTATACTAGTGGCACTAGTCTCTCTCACATTGCCTTCAGAAACTTCAGCTAACTACCCTTACTCATCTCCACCACCACCGGCTTCTCCTCCCTACCACTACAAGTCACCACCACCTCCTTCTCCTTCTCCTCCAGTGTACTCACCACCTAAGCATCCCTACCACCCCAAGTCACCACCACCATCACCAAAGCCTTACCACTACAAGTCCCCACCACCACCTCCTCCTCCAGTGCACTCACCACCCCCACCAAAGGAGCCTTACCACTACAAGTCTCCACCACCACCACCCAAGAAACCTCACCATCACAAGTCTCCTCCACCACCACCCAGGAAGCCCTACCACCCGGTGCACTCACCCCCACCACCAAAGAAGCCTTACCATTACAAGTCTCCTCCACCACCACCCAAGAAGCCCTACCACCCGGTGCACTCACCCCCACCACCAAAGAAGCCTTACCATTACAAGTCTCCTCCACCACCACCCAAGAAGCCCTACCACCCGGTGCACTCCCCACCACCACCAAAGAAGCCTTACCATTACAAGTCTCCTCCACCACCACCCAAGAAGCCCTACCACCCGGTGCACTCACCCCCACCACCAAAGAAGCCTTACCATTACCAATCCCCACCACCACCACCACCACACAAGAAGCCTCACCACCCAGTTCACTCACCACCTCCACCTAAGAAGCCTTACCACTACACGTCTCCCCCACCACCCCCTCCAGTCCACAAGTCTCCTCCACCACCAGTTCACTCACCACCACCACCACCTATTAAACCTTACAAGCCACCAACACCTCCAACAGTTCACCCACCACCCGCTTACATCTATTCATCACCCCCACCTCCTCACCACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Extensin_2

Protein Analysis

300

Amino Acids

33.19

Weight (kDa)

10.04

Isoelectric Point (pI)

129.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14220 FvH4_2g14220
malus_domestica	MD05G1021100.v1.1
pyrus_communis	pycom05g01220 pycom10g01500
rosa_chinensis	RchiOBHm_Chr6g0249201
rosa_laevigata	RLG00000013398
rosa_multiflora	Rmu_sc0004126.1_g000021
rosa_roxburghii	Rroxscaffold_3G00218170 Rroxscaffold_7G00192280 Rroxscaffold_7G00192300
rosa_rugosa	Rorug05G0498700 Rorug06G0101100
rosa_samantha	Rh6AG000100 Rh6AG211800 Rh6BG216000 Rh6CG218300
rosa_wichuraiana	Rw6G018490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	858
AcuI	CTGAAG	2 cut(s)	54, 63
AdeI	CACNNNGTG	4 cut(s)	382, 460, 538, 616
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	286
AflIII	ACRYGT	1 cut(s)	738
AhlI	ACTAGT	2 cut(s)	40, 49
AjiI	CACGTC	1 cut(s)	741
AjnI	CCWGG	1 cut(s)	362
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
Alw21I	GWGCWC	5 cut(s)	270, 387, 465, 543, 621
Alw26I	GTCTC	8 cut(s)	58, 312, 351, 429, 507, 585, 747, 777
Alw44I	GTGCAC	5 cut(s)	266, 383, 461, 539, 617
AoxI	GGCC	1 cut(s)	5
ApaLI	GTGCAC	5 cut(s)	266, 383, 461, 539, 617
AspS9I	GGNCC	1 cut(s)	5
AsuC2I	CCSGG	4 cut(s)	380, 458, 536, 614
BaeGI	GKGCMC	5 cut(s)	270, 387, 465, 543, 621
Bbv12I	GWGCWC	5 cut(s)	270, 387, 465, 543, 621
BccI	CCATC	2 cut(s)	223, 345
BciT130I	CCWGG	1 cut(s)	364
BcnI	CCSGG	4 cut(s)	380, 458, 536, 614
BcoDI	GTCTC	8 cut(s)	58, 312, 351, 429, 507, 585, 747, 777
BcuI	ACTAGT	2 cut(s)	40, 49
BfaI	CTAG	3 cut(s)	41, 50, 898
Bme1390I	CCNGG	5 cut(s)	364, 380, 458, 536, 614
BmgBI	CACGTC	1 cut(s)	741
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	2 cut(s)	6, 291
BmrFI	CCNGG	5 cut(s)	364, 380, 458, 536, 614
BmrI	ACTGGG	1 cut(s)	692
BmsI	GCATC	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	692
BpmI	CTGGAG	3 cut(s)	150, 246, 744
Bpu10I	CCTNAGC	1 cut(s)	183
BpuMI	CCSGG	4 cut(s)	380, 458, 536, 614
BsaJI	CCNNGG	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	5 cut(s)	167, 263, 698, 761, 785
Bse3DI	GCAATG	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMI	GCAATG	1 cut(s)	62
BseNI	ACTGG	5 cut(s)	167, 263, 698, 761, 785
BseSI	GKGCMC	5 cut(s)	270, 387, 465, 543, 621
BshFI	GGCC	1 cut(s)	7
BsiHKAI	GWGCWC	5 cut(s)	270, 387, 465, 543, 621
BsiSI	CCGG	5 cut(s)	113, 380, 458, 536, 614
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	8 cut(s)	58, 312, 351, 429, 507, 585, 747, 777
BsmBI	CGTCTC	1 cut(s)	747
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	7
Bsp1286I	GDGCHC	5 cut(s)	270, 387, 465, 543, 621
BspACI	CCGC	1 cut(s)	858
BspANI	GGCC	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	6, 291
BsrDI	GCAATG	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	112
BsrI	ACTGG	5 cut(s)	167, 263, 698, 761, 785
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	362
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	1 cut(s)	844
BstDEI	CTNAG	2 cut(s)	183, 720
BstF5I	GGATG	1 cut(s)	187
BstMAI	GTCTC	8 cut(s)	58, 312, 351, 429, 507, 585, 747, 777
BstNI	CCWGG	1 cut(s)	364
BstSCI	CCNGG	5 cut(s)	362, 378, 456, 534, 612
BstSLI	GKGCMC	5 cut(s)	270, 387, 465, 543, 621
BsuRI	GGCC	1 cut(s)	7
BtrI	CACGTC	1 cut(s)	741
BtsCI	GGATG	1 cut(s)	187
BtsIMutI	CAGTG	2 cut(s)	174, 270
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	5
Csp6I	GTAC	1 cut(s)	172
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	2 cut(s)	183, 720
DraIII	CACNNNGTG	4 cut(s)	382, 460, 538, 616
Eco57I	CTGAAG	2 cut(s)	54, 63
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	362
Esp3I	CGTCTC	1 cut(s)	747
FaiI	YATR	1 cut(s)	38
FaqI	GGGAC	1 cut(s)	226
FauI	CCCGC	1 cut(s)	865
FokI	GGATG	1 cut(s)	174
FspBI	CTAG	3 cut(s)	41, 50, 898
GsuI	CTGGAG	3 cut(s)	150, 246, 744
HaeIII	GGCC	1 cut(s)	7
HapII	CCGG	5 cut(s)	113, 380, 458, 536, 614
HpaII	CCGG	5 cut(s)	113, 380, 458, 536, 614
Hpy188I	TCNGA	1 cut(s)	73
HpyAV	CCTTC	4 cut(s)	18, 78, 162, 168
HpyCH4III	ACNGT	1 cut(s)	844
HpyCH4IV	ACGT	1 cut(s)	740
HpyCH4V	TGCA	5 cut(s)	268, 385, 463, 541, 619
HpyF3I	CTNAG	2 cut(s)	183, 720
HpySE526I	ACGT	1 cut(s)	740
LmnI	GCTCC	1 cut(s)	289
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	3 cut(s)	41, 50, 898
MaeII	ACGT	1 cut(s)	740
MaeIII	GTNAC	4 cut(s)	16, 31, 138, 204
MhlI	GDGCHC	5 cut(s)	270, 387, 465, 543, 621
MmeI	TCCRAC	1 cut(s)	863
MseI	TTAA	1 cut(s)	813
MspI	CCGG	5 cut(s)	113, 380, 458, 536, 614
MspR9I	CCNGG	5 cut(s)	364, 380, 458, 536, 614
MvaI	CCWGG	1 cut(s)	364
NciI	CCSGG	4 cut(s)	380, 458, 536, 614
NlaIV	GGNNCC	2 cut(s)	6, 291
NmuCI	GTSAC	4 cut(s)	16, 31, 138, 204
Psp6I	CCWGG	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	2 cut(s)	6, 291
PspPI	GGNCC	1 cut(s)	5
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	813
Sau96I	GGNCC	1 cut(s)	5
ScrFI	CCNGG	5 cut(s)	364, 380, 458, 536, 614
SduI	GDGCHC	5 cut(s)	270, 387, 465, 543, 621
SfaNI	GCATC	1 cut(s)	196
SpeI	ACTAGT	2 cut(s)	40, 49
SsiI	CCGC	1 cut(s)	858
SspMI	CTAG	3 cut(s)	41, 50, 898
StyD4I	CCNGG	5 cut(s)	362, 378, 456, 534, 612
TaaI	ACNGT	1 cut(s)	844
TaiI	ACGT	1 cut(s)	743
TatI	WGTACW	1 cut(s)	171
Tru1I	TTAA	1 cut(s)	813
Tru9I	TTAA	1 cut(s)	813
TscAI	CASTG	2 cut(s)	174, 270
TseFI	GTSAC	4 cut(s)	16, 31, 138, 204
Tsp45I	GTSAC	4 cut(s)	16, 31, 138, 204
TspDTI	ATGAA	1 cut(s)	861
TspRI	CASTG	2 cut(s)	174, 270
VneI	GTGCAC	5 cut(s)	266, 383, 461, 539, 617
XspI	CTAG	3 cut(s)	41, 50, 898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.