Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013611

Physical Location & Seq

Genomic Coordinates Reverse (-)

13441833 .. 13444123

Gene Structure 2291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0101100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGAGAAGTTGACCCAGCTTTCATCCAACACCCTGAACACAGGCCCAAACTCTCCATAATCGAAGCCGAAGGCATACCATTAATTGACCTCTCTGCAATAAACTCTCCAAACTCCATCTCTGACCCAGAAGCTATGGAAAGAATTGTTAGAGAAGTGGGCAATGCATGCAAGGAATGGGGGTTCTTCCAAGTAATCAATCATGGGGTGTCATCAGATAAGCTCCAAAAGATTGAGGCTTCTGCTAAAAAGTTCTTTGCTCTGCCTTTGGAGGAGAAGAGGAAGATTAGGAGAGACCTGAACAATGTGTTGGGGTACTTTGACACTGAGAACACCAAGAATATTCGGGACTGGAAGGAGGTGTTTGATTTTGATGTGGAGGACCCTACTTTAGTCCCACCCTCACCTGATCCTGAGGACGACGAAGAGACTGAGTGGACTAATCAATGGCCTAAGTATCCCCCAGAAATGAGGGAGGCATGTCAAGAATATGCTCGAGAAGTTGAAAAGCTAGCTCTAAAGTTGATGGGACTTATTGCCTTAAGTCTGGGCTTGCCGGAAGACAGGTTCAAAGGCTACTTCAAAGACCAAACCACTCGTATCAGACTCAATCACTATCCACCTTGCCCTTCCCCGGAGTTAGCCCTTGGTGTTGGTCGCCACAAGGATGGTGGTGCTCTAACTGTGCTAGCTCAAGATGATGTTGGAGGATTGGAAGTGAAGAGAAAAACAGATGGAGAGTGGGTTAGTGTAAATCCCACCCCAAATGCTTATATCATCAATCTTGGCGACACTCTTCAGGTTTGGAGCAATGAGAGATATGAGAGTACAGAACACAGGGTGATGGTGAATTCAGAGAAGGAAAGGTTTTCTATCCCGTACTTCCTTGAGCCAGCACACTACACCATAATAAAGCCCTTGGAAGAGCTGATAAATGAACAAAATCCTGCAAAGTACAGGCCATACAGCTGGGGCAAGTTTACGACTCACAGAAAGCTGAGTAATTTCAAGAAACTCAATGTTGAAAACATCCAAATTCATGATTTCAGGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

351

Amino Acids

40.49

Weight (kDa)

5.31

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	26 - 152	2.8e-33	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	201 - 298	6.4e-34	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14220 FvH4_2g14220
malus_domestica	MD05G1021100.v1.1
pyrus_communis	pycom05g01220 pycom10g01500
rosa_chinensis	RchiOBHm_Chr6g0249201
rosa_laevigata	RLG00000013398
rosa_multiflora	Rmu_sc0004126.1_g000021
rosa_roxburghii	Rroxscaffold_3G00218170 Rroxscaffold_7G00192280 Rroxscaffold_7G00192300
rosa_rugosa	Rorug05G0498700 Rorug06G0101100
rosa_samantha	Rh6AG000100 Rh6AG211800 Rh6BG216000 Rh6CG218300
rosa_wichuraiana	Rw6G018490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	404
AcsI	RAATTY	2 cut(s)	850, 1035
AcuI	CTGAAG	1 cut(s)	782
AdeI	CACNNNGTG	1 cut(s)	841
AfaI	GTAC	4 cut(s)	317, 829, 881, 956
AfiI	CCNNNNNNNGG	1 cut(s)	634
AflII	CTTAAG	1 cut(s)	541
AgsI	TTSAA	5 cut(s)	506, 571, 583, 1009, 1025
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AloI	GAACNNNNNNTCC	4 cut(s)	167, 199, 551, 583
AluBI	AGCT	9 cut(s)	20, 134, 223, 511, 515, 692, 928, 969, 997
AluI	AGCT	9 cut(s)	20, 134, 223, 511, 515, 692, 928, 969, 997
Alw21I	GWGCWC	1 cut(s)	679
Alw26I	GTCTC	2 cut(s)	288, 422
AlwI	GGATC	1 cut(s)	404
Ama87I	CYCGRG	1 cut(s)	495
AoxI	GGCC	3 cut(s)	44, 449, 959
ApoI	RAATTY	2 cut(s)	850, 1035
AseI	ATTAAT	1 cut(s)	83
AspS9I	GGNCC	2 cut(s)	45, 382
AsuC2I	CCSGG	1 cut(s)	635
AsuHPI	GGTGA	3 cut(s)	396, 853, 859
AsuNHI	GCTAGC	2 cut(s)	511, 688
AvaI	CYCGRG	1 cut(s)	495
AvaII	GGWCC	1 cut(s)	382
AxyI	CCTNAGG	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	567
Bbv12I	GWGCWC	1 cut(s)	679
BccI	CCATC	5 cut(s)	125, 520, 662, 728, 838
BciVI	GTATCC	1 cut(s)	468
BcnI	CCSGG	1 cut(s)	635
BcoDI	GTCTC	2 cut(s)	288, 422
BfaI	CTAG	2 cut(s)	512, 689
BfrI	CTTAAG	1 cut(s)	541
BfuI	GTATCC	1 cut(s)	468
Bme1390I	CCNGG	1 cut(s)	635
Bme18I	GGWCC	1 cut(s)	382
BmeT110I	CYCGRG	1 cut(s)	495
BmgT120I	GGNCC	2 cut(s)	45, 382
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	1 cut(s)	635
BmtI	GCTAGC	2 cut(s)	515, 692
BpiI	GAAGAC	1 cut(s)	567
BpuEI	CTTGAG	2 cut(s)	678, 908
BpuMI	CCSGG	1 cut(s)	635
BsaI	GGTCTC	1 cut(s)	288
BsaJI	CCNNGG	3 cut(s)	633, 646, 918
BsaXI	ACNNNNNCTCC	2 cut(s)	729, 759
Bsc4I	CCNNNNNNNGG	1 cut(s)	634
Bse1I	ACTGG	1 cut(s)	356
Bse21I	CCTNAGG	1 cut(s)	414
Bse3DI	GCAATG	2 cut(s)	169, 817
BseDI	CCNNGG	3 cut(s)	633, 646, 918
BseGI	GGATG	3 cut(s)	24, 673, 1029
BseLI	CCNNNNNNNGG	1 cut(s)	634
BseMI	GCAATG	2 cut(s)	169, 817
BseMII	CTCAG	4 cut(s)	318, 405, 423, 989
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	1 cut(s)	287
BseYI	CCCAGC	2 cut(s)	16, 969
BshFI	GGCC	3 cut(s)	46, 451, 961
BsiHKAI	GWGCWC	1 cut(s)	679
BsiHKCI	CYCGRG	1 cut(s)	495
BsiSI	CCGG	2 cut(s)	557, 635
BslFI	GGGAC	3 cut(s)	362, 380, 543
BslI	CCNNNNNNNGG	1 cut(s)	634
BsmAI	GTCTC	2 cut(s)	288, 422
BsmFI	GGGAC	3 cut(s)	362, 380, 543
BsnI	GGCC	3 cut(s)	46, 451, 961
Bso31I	GGTCTC	1 cut(s)	288
BsoBI	CYCGRG	1 cut(s)	495
Bsp1286I	GDGCHC	1 cut(s)	679
Bsp143I	GATC	1 cut(s)	409
BspANI	GGCC	3 cut(s)	46, 451, 961
BspCNI	CTCAG	4 cut(s)	319, 406, 424, 990
BspHI	TCATGA	1 cut(s)	1039
BspLI	GGNNCC	1 cut(s)	384
BspOI	GCTAGC	2 cut(s)	515, 692
BspPI	GGATC	1 cut(s)	404
BspQI	GCTCTTC	1 cut(s)	918
BspTI	CTTAAG	1 cut(s)	541
BspTNI	GGTCTC	1 cut(s)	288
BsrDI	GCAATG	2 cut(s)	169, 817
BsrI	ACTGG	1 cut(s)	356
BssECI	CCNNGG	3 cut(s)	633, 646, 918
BssMI	GATC	1 cut(s)	409
BssT1I	CCWWGG	2 cut(s)	646, 918
Bst4CI	ACNGT	1 cut(s)	685
Bst6I	CTCTTC	5 cut(s)	272, 420, 716, 801, 918
BstAFI	CTTAAG	1 cut(s)	541
BstAPI	GCANNNNNTGC	1 cut(s)	168
BstC8I	GCNNGC	5 cut(s)	169, 513, 554, 690, 894
BstDEI	CTNAG	5 cut(s)	327, 414, 432, 453, 998
BstF5I	GGATG	3 cut(s)	24, 673, 1029
BstKTI	GATC	1 cut(s)	412
BstMAI	GTCTC	2 cut(s)	288, 422
BstMBI	GATC	1 cut(s)	409
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstNSI	RCATGY	2 cut(s)	171, 483
BstSCI	CCNGG	1 cut(s)	633
BstV2I	GAAGAC	1 cut(s)	567
BstXI	CCANNNNNNTGG	2 cut(s)	668, 969
Bsu36I	CCTNAGG	1 cut(s)	414
BsuI	GTATCC	1 cut(s)	468
BsuRI	GGCC	3 cut(s)	46, 451, 961
BtsCI	GGATG	3 cut(s)	24, 673, 1029
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	5 cut(s)	169, 513, 554, 690, 894
CciI	TCATGA	1 cut(s)	1039
Cfr13I	GGNCC	2 cut(s)	45, 382
Csp6I	GTAC	4 cut(s)	316, 828, 880, 955
CspCI	CAANNNNNGTGG	2 cut(s)	652, 687
CviAII	CATG	4 cut(s)	168, 203, 480, 1040
CviQI	GTAC	4 cut(s)	316, 828, 880, 955
DdeI	CTNAG	5 cut(s)	327, 414, 432, 453, 998
DpnI	GATC	1 cut(s)	411
DpnII	GATC	1 cut(s)	409
DraIII	CACNNNGTG	1 cut(s)	841
Eam1104I	CTCTTC	5 cut(s)	272, 420, 716, 801, 918
EarI	CTCTTC	5 cut(s)	272, 420, 716, 801, 918
Eco130I	CCWWGG	2 cut(s)	646, 918
Eco31I	GGTCTC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	382
Eco57I	CTGAAG	1 cut(s)	782
Eco81I	CCTNAGG	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	495
EcoO109I	RGGNCCY	1 cut(s)	382
EcoRI	GAATTC	1 cut(s)	850
EcoT14I	CCWWGG	2 cut(s)	646, 918
EcoT22I	ATGCAT	1 cut(s)	169
ErhI	CCWWGG	2 cut(s)	646, 918
FaeI	CATG	4 cut(s)	171, 206, 483, 1043
FaqI	GGGAC	3 cut(s)	362, 380, 543
FatI	CATG	4 cut(s)	167, 202, 479, 1039
FokI	GGATG	3 cut(s)	11, 680, 1016
FspBI	CTAG	2 cut(s)	512, 689
GsaI	CCCAGC	2 cut(s)	20, 973
HaeIII	GGCC	3 cut(s)	46, 451, 961
HapII	CCGG	2 cut(s)	557, 635
Hin1II	CATG	4 cut(s)	171, 206, 483, 1043
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	2 cut(s)	606, 985
HpaII	CCGG	2 cut(s)	557, 635
HphI	GGTGA	3 cut(s)	396, 853, 859
Hpy166II	GTNNAC	3 cut(s)	13, 438, 981
Hpy188I	TCNGA	4 cut(s)	124, 217, 605, 856
Hpy188III	TCNNGA	8 cut(s)	347, 413, 485, 497, 695, 1009, 1040, 1048
Hpy8I	GTNNAC	3 cut(s)	13, 438, 981
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	4 cut(s)	65, 349, 639, 853
HpyCH4III	ACNGT	1 cut(s)	685
HpyCH4V	TGCA	4 cut(s)	98, 167, 171, 950
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpyF3I	CTNAG	5 cut(s)	327, 414, 432, 453, 998
Hsp92II	CATG	4 cut(s)	171, 206, 483, 1043
Kzo9I	GATC	1 cut(s)	409
LguI	GCTCTTC	1 cut(s)	918
LmnI	GCTCC	2 cut(s)	228, 807
MaeI	CTAG	2 cut(s)	512, 689
MalI	GATC	1 cut(s)	411
MboI	GATC	1 cut(s)	409
MboII	GAAGA	8 cut(s)	178, 289, 295, 437, 572, 733, 788, 935
MhlI	GDGCHC	1 cut(s)	679
MluCI	AATT	5 cut(s)	84, 144, 850, 1003, 1035
MlyI	GAGTC	2 cut(s)	600, 979
MmeI	TCCRAC	2 cut(s)	52, 685
Mph1103I	ATGCAT	1 cut(s)	169
MseI	TTAA	2 cut(s)	83, 542
MslI	CAYNNNNRTG	1 cut(s)	666
MspA1I	CMGCKG	1 cut(s)	969
MspCI	CTTAAG	1 cut(s)	541
MspI	CCGG	2 cut(s)	557, 635
MspR9I	CCNGG	1 cut(s)	635
MwoI	GCNNNNNNNGC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	635
NdeII	GATC	1 cut(s)	409
NheI	GCTAGC	2 cut(s)	511, 688
NlaIII	CATG	4 cut(s)	171, 206, 483, 1043
NlaIV	GGNNCC	1 cut(s)	384
NsiI	ATGCAT	1 cut(s)	169
NspI	RCATGY	2 cut(s)	171, 483
PaeI	GCATGC	1 cut(s)	171
PaeR7I	CTCGAG	1 cut(s)	495
PagI	TCATGA	1 cut(s)	1039
PciSI	GCTCTTC	1 cut(s)	918
PleI	GAGTC	2 cut(s)	600, 979
PpsI	GAGTC	2 cut(s)	600, 979
PpuMI	RGGWCCY	1 cut(s)	382
PshBI	ATTAAT	1 cut(s)	83
Psp5II	RGGWCCY	1 cut(s)	382
PspFI	CCCAGC	2 cut(s)	16, 969
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	2 cut(s)	45, 382
PspPPI	RGGWCCY	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	969
RsaI	GTAC	4 cut(s)	317, 829, 881, 956
RsaNI	GTAC	4 cut(s)	316, 828, 880, 955
RseI	CAYNNNNRTG	1 cut(s)	666
SapI	GCTCTTC	1 cut(s)	918
SaqAI	TTAA	2 cut(s)	83, 542
Sau3AI	GATC	1 cut(s)	409
Sau96I	GGNCC	2 cut(s)	45, 382
SchI	GAGTC	2 cut(s)	600, 979
ScrFI	CCNGG	1 cut(s)	635
SduI	GDGCHC	1 cut(s)	679
Sfr274I	CTCGAG	1 cut(s)	495
SinI	GGWCC	1 cut(s)	382
SlaI	CTCGAG	1 cut(s)	495
SmiMI	CAYNNNNRTG	1 cut(s)	666
SmlI	CTYRAG	4 cut(s)	495, 541, 693, 887
SmoI	CTYRAG	4 cut(s)	495, 541, 693, 887
SphI	GCATGC	1 cut(s)	171
Sse9I	AATT	5 cut(s)	84, 144, 850, 1003, 1035
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	2 cut(s)	512, 689
StyD4I	CCNGG	1 cut(s)	633
StyI	CCWWGG	2 cut(s)	646, 918
TaaI	ACNGT	1 cut(s)	685
TaqI	TCGA	2 cut(s)	63, 496
TasI	AATT	5 cut(s)	84, 144, 850, 1003, 1035
TatI	WGTACW	2 cut(s)	827, 954
Tru1I	TTAA	2 cut(s)	83, 542
Tru9I	TTAA	2 cut(s)	83, 542
TscAI	CASTG	1 cut(s)	331
TspDTI	ATGAA	3 cut(s)	13, 951, 1028
TspRI	CASTG	1 cut(s)	331
Vha464I	CTTAAG	1 cut(s)	541
VpaK11BI	GGWCC	1 cut(s)	382
VspI	ATTAAT	1 cut(s)	83
XapI	RAATTY	2 cut(s)	850, 1035
XceI	RCATGY	2 cut(s)	171, 483
XcmI	CCANNNNNNNNNTGG	1 cut(s)	668
XhoI	CTCGAG	1 cut(s)	495
XspI	CTAG	2 cut(s)	512, 689
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.