RLG00000013398

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
30969253 .. 30970539
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013398

Sequence Viewer

Length: 1287 bp
ATGGGGACCTCTCTAGTTTTTAGTCTTCTAGTGGCAATAGTCGCCTTCGCCTCGCAAACCTCGGCAAACTACCCTTACTCCTCTCCTCCACCACCTGCTTCTCCTCCTTACCACTACAAGTCACCACCGCCGCCGCCAGTGCACTACGCACCACCCCATCATCCTTACTATCCTCCCAAGTCACCGCCTAAGCCTCCGGTGTACTCTCCACCAAAGCATCCTTATTACCCTCCCAAGTCACCGCCTAAGCCTCCGGTGTACTCGCCGCCTAAGCATCCCTATTATCCACCAAAATCACCACCAAAGCCTCCGGTGTACTCCCCTCCTAAGCACCCCCATTACCCTCCCCACTACCCTCCCAAGCCTCCGGTGTACTCCCCTCCTAAGCACCCCCATTACCCTCCCCACTACCCTCCCAAGTCACCGCCAAAGCCTCCGGTGTACTCCCCTCCTAAGCACCCCCATTACCCTCCCCACTACCCTCCCAAGCCTCCGGTGTACTCCCCTCCTAAGCACCCCCATTACCCTCCCCACTACCCTCCCAAGTCACCGCCAAAGCCTCCGGTGTACTCCCCTCCTAAGCACCCCCATTACCCTCCCCACTACCCTCCCAAGCCTCCGGTGTACTCCCCTCCTAAGCCCCATTACCCTCCCCACTACCCTCCCAAGTCACCGCCAAAGCCTCCGGTGTACTCCCCTCCTAAGCACCCCCATTACCCTCCCCACTACCCTCCCAAGCCTCCGGTGTACTCCCCTCCTAAGCCCCATTACCCTCCCCACTACCCTCCCAAGTCACCACCTAAGCCTCCGGTCTACCACTACAAATCTCCACCACCTCCAACACCACCACCACCAAAATACTACTACAAGTCTCCTCCACCACCACCACCACCACCAAAGAAGCCATACCACTACATGTCTCCACCACCACCACCACCACACAAGAAGCCCTACCACCCACACCACTCACCACCACCACCAAAGAAGCCATACCACTACAAGTCTCCTCCACCACCAACACCAGTCTACTCACCACCCAAGCACCCTCACTACCCTCCCAAGTCACCACCTTACCACTACAAGTCTCCTCCACCTCCTTCTCCTCCTCCTCCAGTCTACTCTCCACCCCACATTCCATACCACTACAAGTCACCACCACCACCACCACCTGTCTACAAGTCTCCTCCTCTACCACCACCACACAAGCCTTACAAGCCTCCTACTCCTCCCGTTCACACTCCACCGGCTTACATCTACTCCTCACCTCCTCCTCCTCACCACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

429

Amino Acids

48.45

Weight (kDa)

9.88

Isoelectric Point (pI)

134.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 103
Acc36I ACCTGC 1 cut(s) 103
AccI GTMKAC 4 cut(s) 813, 1026, 1116, 1173
AciI CCGC 9 cut(s) 128, 131, 134, 185, 242, 266, 425, 551, 674
AflIII ACRYGT 1 cut(s) 915
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 5 cut(s) 876, 924, 1008, 1089, 1185
Alw44I GTGCAC 1 cut(s) 140
ApaLI GTGCAC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 6
AvaII GGWCC 1 cut(s) 6
BaeGI GKGCMC 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 144
BccI CCATC 1 cut(s) 165
BcoDI GTCTC 5 cut(s) 876, 924, 1008, 1089, 1185
BfaI CTAG 3 cut(s) 14, 29, 1285
BfuAI ACCTGC 1 cut(s) 103
BisI GCNGC 3 cut(s) 131, 134, 266
BlsI GCNGC 3 cut(s) 132, 135, 267
Bme18I GGWCC 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 6
BmiI GGNNCC 1 cut(s) 7
BmsI GCATC 2 cut(s) 226, 283
BpiI GAAGAC 1 cut(s) 17
BpmI CTGGAG 1 cut(s) 1095
BsaJI CCNNGG 1 cut(s) 60
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 1241, 1271
Bse118I RCCGGY 1 cut(s) 1243
Bse1I ACTGG 3 cut(s) 137, 1022, 1112
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 3 cut(s) 160, 217, 274
BseNI ACTGG 3 cut(s) 137, 1022, 1112
BseSI GKGCMC 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 144
BslFI GGGAC 1 cut(s) 19
BsmAI GTCTC 5 cut(s) 876, 924, 1008, 1089, 1185
BsmFI GGGAC 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 144
BspACI CCGC 9 cut(s) 128, 131, 134, 185, 242, 266, 425, 551, 674
BspLI GGNNCC 1 cut(s) 7
BspMI ACCTGC 1 cut(s) 103
BsrFI RCCGGY 1 cut(s) 1243
BsrI ACTGG 3 cut(s) 137, 1022, 1112
BssAI RCCGGY 1 cut(s) 1243
BssECI CCNNGG 1 cut(s) 60
BstF5I GGATG 3 cut(s) 160, 217, 274
BstMAI GTCTC 5 cut(s) 876, 924, 1008, 1089, 1185
BstMWI GCNNNNNNNGC 4 cut(s) 41, 139, 271, 1213
BstNSI RCATGY 1 cut(s) 919
BstSLI GKGCMC 1 cut(s) 144
BstV2I GAAGAC 1 cut(s) 17
BtsCI GGATG 3 cut(s) 160, 217, 274
BtsIMutI CAGTG 1 cut(s) 144
BveI ACCTGC 1 cut(s) 103
Cfr10I RCCGGY 1 cut(s) 1243
Cfr13I GGNCC 1 cut(s) 6
CviAII CATG 1 cut(s) 916
Eco47I GGWCC 1 cut(s) 6
EcoO109I RGGNCCY 1 cut(s) 6
FaeI CATG 1 cut(s) 919
FaiI YATR 4 cut(s) 907, 917, 991, 1138
FaqI GGGAC 1 cut(s) 19
FatI CATG 1 cut(s) 915
FblI GTMKAC 4 cut(s) 813, 1026, 1116, 1173
Fnu4HI GCNGC 3 cut(s) 131, 134, 266
FokI GGATG 3 cut(s) 147, 204, 261
Fsp4HI GCNGC 3 cut(s) 131, 134, 266
FspBI CTAG 3 cut(s) 14, 29, 1285
GluI GCNGC 3 cut(s) 131, 134, 266
GsuI CTGGAG 1 cut(s) 1095
Hin1II CATG 1 cut(s) 919
HpyAV CCTTC 2 cut(s) 55, 1107
HpyCH4V TGCA 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 139, 271, 1213
Hsp92II CATG 1 cut(s) 919
LweI GCATC 2 cut(s) 226, 283
MaeI CTAG 3 cut(s) 14, 29, 1285
MaeIII GTNAC 9 cut(s) 120, 180, 237, 420, 546, 669, 792, 1062, 1149
MboII GAAGA 1 cut(s) 17
MhlI GDGCHC 1 cut(s) 144
MmeI TCCRAC 1 cut(s) 863
MwoI GCNNNNNNNGC 4 cut(s) 41, 139, 271, 1213
NlaIII CATG 1 cut(s) 919
NlaIV GGNNCC 1 cut(s) 7
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 9 cut(s) 120, 180, 237, 420, 546, 669, 792, 1062, 1149
NspI RCATGY 1 cut(s) 919
PaqCI CACCTGC 1 cut(s) 103
PciI ACATGT 1 cut(s) 915
PkrI GCNGC 3 cut(s) 132, 135, 267
PpuMI RGGWCCY 1 cut(s) 6
PscI ACATGT 1 cut(s) 915
Psp5II RGGWCCY 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 6
PspPPI RGGWCCY 1 cut(s) 6
SatI GCNGC 3 cut(s) 131, 134, 266
Sau96I GGNCC 1 cut(s) 6
SduI GDGCHC 1 cut(s) 144
SetI ASST 9 cut(s) 11, 62, 97, 802, 838, 1072, 1096, 1171, 1267
SfaNI GCATC 2 cut(s) 226, 283
SinI GGWCC 1 cut(s) 6
SsiI CCGC 9 cut(s) 128, 131, 134, 185, 242, 266, 425, 551, 674
SspMI CTAG 3 cut(s) 14, 29, 1285
TauI GCSGC 3 cut(s) 133, 136, 268
TscAI CASTG 1 cut(s) 144
TseFI GTSAC 9 cut(s) 120, 180, 237, 420, 546, 669, 792, 1062, 1149
Tsp45I GTSAC 9 cut(s) 120, 180, 237, 420, 546, 669, 792, 1062, 1149
TspRI CASTG 1 cut(s) 144
VneI GTGCAC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 6
XceI RCATGY 1 cut(s) 919
XmiI GTMKAC 4 cut(s) 813, 1026, 1116, 1173
XspI CTAG 3 cut(s) 14, 29, 1285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.