Rw6G018490

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
36727486 .. 36728806
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G018490.1

Sequence Viewer

Length: 873 bp
ATGGGGAAAATGGGGACCTCTCTAGTTTTTAGTCTTCTAGTGGCAATACTCGCCTTCGCCTCGCAAACCTCGGCAAACTACCCTTACTCCTCTCCTCCACCACCTGCTTCTCCTCCTTACCACTACAAGTCGCCGCCGCCGCCAGTGCACTACGCACCACCCCATCATCCTTACTATCCTCCCAAGTCACCGCCTAAGCCTCCGGTGTACTCTCCACCAAAGCATCCTTATTACCCTCCCAAGTCACCGCCTAAGCCTCCGGTGTACTCCCCTCCTAAGCACCCCCATTACCCTCCCCACTACCCTCCCAAGTCACCGCCTAAGCCTCCGGTGTACTCCCCTCCTAACACCCCCCATTACCCTCCTCATTACCCTCCCAAGTCGCCACCTAAGCCTCCGGTGTACTCCCCTCCTAAGCACCCCCATTACCCTCCCCACTACCCTCCCAAGTCGCCACCTAAGCCTCCGGTGTACTCCCCTCCTAAGCACCCCCATTACCCTCCCCACTACCCTCCCAAGTCACCACCTAAGCCTCCGGTGTACCACTACAAATCTCCACCACCTCCACCTCCATCACCACCACCTCCATCACCACCACCACCAAAGGTGCCTTTACTCCAACCACCACCAAAAGAAGCCATACCACTCACTCCCACCACCACCACCATCTCCACCACCAAAGAAGCCATACCACTACAAGTCTCCACCACCACCACCACCACACAAGAAGCCCTACCACCCACACCACTCACCACCACCACCACCAACCCCATCACCACCAAAGAAGCCATACCACTACAAGTCTCCTCCACCACCAACACCAGTCTACTCACCACCTCACCACCCCTACTACCCCCCCAAGTCTCCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

290

Amino Acids

31.56

Weight (kDa)

9.79

Isoelectric Point (pI)

105.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 112
AccB1I GGYRCC 1 cut(s) 607
AccI GTMKAC 1 cut(s) 826
AciI CCGC 6 cut(s) 134, 137, 140, 191, 248, 317
AfaI GTAC 6 cut(s) 209, 266, 335, 404, 473, 542
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 3 cut(s) 706, 808, 868
Alw44I GTGCAC 1 cut(s) 146
ApaLI GTGCAC 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 15
AvaII GGWCC 1 cut(s) 15
BaeGI GKGCMC 1 cut(s) 150
BanI GGYRCC 1 cut(s) 607
BbsI GAAGAC 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 150
BccI CCATC 5 cut(s) 171, 580, 595, 674, 779
BcoDI GTCTC 3 cut(s) 706, 808, 868
BfaI CTAG 2 cut(s) 23, 38
BfuAI ACCTGC 1 cut(s) 112
BisI GCNGC 3 cut(s) 134, 137, 140
BlsI GCNGC 3 cut(s) 135, 138, 141
Bme18I GGWCC 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 15
BmiI GGNNCC 2 cut(s) 16, 609
BmsI GCATC 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 26
Bpu10I CCTNAGC 9 cut(s) 195, 252, 276, 321, 390, 414, 459, 483, 528
BsaJI CCNNGG 1 cut(s) 69
BsaWI WCCGGW 6 cut(s) 202, 259, 328, 397, 466, 535
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bse1I ACTGG 2 cut(s) 143, 822
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 2 cut(s) 166, 223
BseNI ACTGG 2 cut(s) 143, 822
BseRI GAGGAG 5 cut(s) 79, 84, 102, 354, 796
BseSI GKGCMC 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 607
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 6 cut(s) 203, 260, 329, 398, 467, 536
BslFI GGGAC 1 cut(s) 28
BsmAI GTCTC 3 cut(s) 706, 808, 868
BsmFI GGGAC 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 150
BspACI CCGC 6 cut(s) 134, 137, 140, 191, 248, 317
BspLI GGNNCC 2 cut(s) 16, 609
BspMI ACCTGC 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 607
BsrI ACTGG 2 cut(s) 143, 822
BssECI CCNNGG 1 cut(s) 69
BstDEI CTNAG 9 cut(s) 195, 252, 276, 321, 390, 414, 459, 483, 528
BstF5I GGATG 2 cut(s) 166, 223
BstMAI GTCTC 3 cut(s) 706, 808, 868
BstMWI GCNNNNNNNGC 5 cut(s) 50, 139, 145, 391, 460
BstSLI GKGCMC 1 cut(s) 150
BstV2I GAAGAC 1 cut(s) 26
BtsCI GGATG 2 cut(s) 166, 223
BtsIMutI CAGTG 1 cut(s) 150
BveI ACCTGC 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 15
Csp6I GTAC 6 cut(s) 208, 265, 334, 403, 472, 541
CviQI GTAC 6 cut(s) 208, 265, 334, 403, 472, 541
DdeI CTNAG 9 cut(s) 195, 252, 276, 321, 390, 414, 459, 483, 528
Eco47I GGWCC 1 cut(s) 15
EcoO109I RGGNCCY 1 cut(s) 15
FaiI YATR 3 cut(s) 641, 689, 791
FaqI GGGAC 1 cut(s) 28
FblI GTMKAC 1 cut(s) 826
Fnu4HI GCNGC 3 cut(s) 134, 137, 140
FokI GGATG 2 cut(s) 153, 210
Fsp4HI GCNGC 3 cut(s) 134, 137, 140
FspBI CTAG 2 cut(s) 23, 38
GluI GCNGC 3 cut(s) 134, 137, 140
HapII CCGG 6 cut(s) 203, 260, 329, 398, 467, 536
HpaII CCGG 6 cut(s) 203, 260, 329, 398, 467, 536
Hpy166II GTNNAC 8 cut(s) 148, 208, 265, 334, 403, 472, 541, 827
Hpy8I GTNNAC 8 cut(s) 148, 208, 265, 334, 403, 472, 541, 827
HpyAV CCTTC 1 cut(s) 64
HpyCH4V TGCA 1 cut(s) 148
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 139, 145, 391, 460
HpyF3I CTNAG 9 cut(s) 195, 252, 276, 321, 390, 414, 459, 483, 528
LpnPI CCDG 9 cut(s) 117, 156, 216, 273, 342, 411, 480, 549, 835
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 23, 38
MaeIII GTNAC 4 cut(s) 186, 243, 312, 519
MboII GAAGA 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 150
MmeI TCCRAC 1 cut(s) 643
MspI CCGG 6 cut(s) 203, 260, 329, 398, 467, 536
MwoI GCNNNNNNNGC 5 cut(s) 50, 139, 145, 391, 460
NlaIV GGNNCC 2 cut(s) 16, 609
NmeAIII GCCGAG 1 cut(s) 50
NmuCI GTSAC 4 cut(s) 186, 243, 312, 519
PaqCI CACCTGC 1 cut(s) 112
PkrI GCNGC 3 cut(s) 135, 138, 141
PpuMI RGGWCCY 1 cut(s) 15
Psp5II RGGWCCY 1 cut(s) 15
PspN4I GGNNCC 2 cut(s) 16, 609
PspPI GGNCC 1 cut(s) 15
PspPPI RGGWCCY 1 cut(s) 15
RsaI GTAC 6 cut(s) 209, 266, 335, 404, 473, 542
RsaNI GTAC 6 cut(s) 208, 265, 334, 403, 472, 541
SatI GCNGC 3 cut(s) 134, 137, 140
Sau96I GGNCC 1 cut(s) 15
SduI GDGCHC 1 cut(s) 150
SfaNI GCATC 1 cut(s) 232
SinI GGWCC 1 cut(s) 15
SsiI CCGC 6 cut(s) 134, 137, 140, 191, 248, 317
SspMI CTAG 2 cut(s) 23, 38
TatI WGTACW 5 cut(s) 207, 264, 333, 402, 471
TauI GCSGC 3 cut(s) 136, 139, 142
TscAI CASTG 1 cut(s) 150
TseFI GTSAC 4 cut(s) 186, 243, 312, 519
Tsp45I GTSAC 4 cut(s) 186, 243, 312, 519
TspRI CASTG 1 cut(s) 150
VneI GTGCAC 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 15
XmiI GTMKAC 1 cut(s) 826
XspI CTAG 2 cut(s) 23, 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.