Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0013611

Physical Location & Seq

Genomic Coordinates Reverse (-)

62628 .. 63800

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG000100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGGGAAAATGGGGACCTCTCTAGTTTTGAGTCTTCTAGTGGCAATAGTCGCTTTCGCTTCGCAAACCTCGGCAAATTACCCTTACTCCTCTCCTCCACCACCTGCCTCTCCTCCTTACCACTACAAGTCTCCGCCACCACCATCGCCGCCAGTGCACTACGCACCACCCCATCATCCTCACTATCCTGCCAAGTCACCGCCTAAGCCTCCGGTGTACTCTCCACCAAAGCATCCTCATTACCCACCAAAGTCACCACCATCACCCACACCCCCGGTGAACTCGCCGCCTAAGCATCCTCATTATCCACCAAAGTCACCACCAAAGCCTCCTGTGTACTCCCCTCCTAAGCACCCCTATTACCCTCCCAAGTCACCACCTAAGCCTCCGGTCTACTCGCCGCCTAAGCATCCCCATTATCCACCAAAGTCACCACCAAAGCCTCCGGTGTACTCCCCTCCTAAGCACCCCCATTACCCTCCTAAGTCACCACCTAAGCCTCCGGTGTACTCGCCGCCTAAGCATCCCCATTATCCACCAAAATCTCCACCACCACCTTACAAGCTTCCTAGTGGTCATTTCATGGAGTACCCACCTCCTCCTCACCGCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

22.53

Weight (kDa)

9.96

Isoelectric Point (pI)

120.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14220 FvH4_2g14220
malus_domestica	MD05G1021100.v1.1
pyrus_communis	pycom05g01220 pycom10g01500
rosa_chinensis	RchiOBHm_Chr6g0249201
rosa_laevigata	RLG00000013398
rosa_multiflora	Rmu_sc0004126.1_g000021
rosa_roxburghii	Rroxscaffold_3G00218170 Rroxscaffold_7G00192280 Rroxscaffold_7G00192300
rosa_rugosa	Rorug05G0498700 Rorug06G0101100
rosa_samantha	Rh6AG000100 Rh6AG211800 Rh6BG216000 Rh6CG218300
rosa_wichuraiana	Rw6G018490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	112
Acc36I	ACCTGC	1 cut(s)	112
AccI	GTMKAC	1 cut(s)	393
AciI	CCGC	7 cut(s)	134, 149, 200, 287, 401, 515, 607
AfaI	GTAC	5 cut(s)	218, 338, 452, 509, 590
AluBI	AGCT	1 cut(s)	565
AluI	AGCT	1 cut(s)	565
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	135
Alw44I	GTGCAC	1 cut(s)	155
ApaLI	GTGCAC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	15
AsuC2I	CCSGG	1 cut(s)	275
AsuHPI	GGTGA	9 cut(s)	189, 246, 255, 289, 309, 366, 423, 480, 596
AvaII	GGWCC	1 cut(s)	15
BaeGI	GKGCMC	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	159
BccI	CCATC	3 cut(s)	151, 180, 268
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	4 cut(s)	23, 38, 570, 613
BfuAI	ACCTGC	1 cut(s)	112
BisI	GCNGC	4 cut(s)	149, 287, 401, 515
BlsI	GCNGC	4 cut(s)	150, 288, 402, 516
Bme1390I	CCNGG	1 cut(s)	275
Bme18I	GGWCC	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	15
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	275
BmsI	GCATC	4 cut(s)	241, 304, 418, 532
BpiI	GAAGAC	1 cut(s)	26
Bpu10I	CCTNAGC	8 cut(s)	204, 291, 348, 381, 405, 462, 495, 519
BpuMI	CCSGG	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	69, 273
BsaWI	WCCGGW	4 cut(s)	211, 388, 445, 502
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bse1I	ACTGG	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	69, 273
BseGI	GGATG	5 cut(s)	175, 232, 295, 409, 523
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	5 cut(s)	79, 84, 102, 588, 591
BseSI	GKGCMC	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	5 cut(s)	212, 275, 389, 446, 503
BslFI	GGGAC	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	159
BspACI	CCGC	7 cut(s)	134, 149, 200, 287, 401, 515, 607
BspLI	GGNNCC	1 cut(s)	16
BspMI	ACCTGC	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	2 cut(s)	69, 273
BstDEI	CTNAG	9 cut(s)	204, 291, 348, 381, 405, 462, 483, 495, 519
BstF5I	GGATG	5 cut(s)	175, 232, 295, 409, 523
BstMAI	GTCTC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 154, 292, 406, 520
BstSCI	CCNGG	1 cut(s)	273
BstSLI	GKGCMC	1 cut(s)	159
BstV2I	GAAGAC	1 cut(s)	26
BtgZI	GCGATG	1 cut(s)	129
BtsCI	GGATG	5 cut(s)	175, 232, 295, 409, 523
BtsIMutI	CAGTG	1 cut(s)	159
BveI	ACCTGC	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	15
Csp6I	GTAC	5 cut(s)	217, 337, 451, 508, 589
CviAII	CATG	1 cut(s)	583
CviJI	RGCY	6 cut(s)	208, 328, 385, 442, 499, 565
CviKI_1	RGCY	6 cut(s)	208, 328, 385, 442, 499, 565
CviQI	GTAC	5 cut(s)	217, 337, 451, 508, 589
DdeI	CTNAG	9 cut(s)	204, 291, 348, 381, 405, 462, 483, 495, 519
EciI	GGCGGA	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	15
EcoO109I	RGGNCCY	1 cut(s)	15
FaeI	CATG	1 cut(s)	586
FaiI	YATR	1 cut(s)	584
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	1 cut(s)	582
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	4 cut(s)	149, 287, 401, 515
FokI	GGATG	5 cut(s)	162, 219, 282, 396, 510
Fsp4HI	GCNGC	4 cut(s)	149, 287, 401, 515
FspBI	CTAG	4 cut(s)	23, 38, 570, 613
GluI	GCNGC	4 cut(s)	149, 287, 401, 515
HapII	CCGG	5 cut(s)	212, 275, 389, 446, 503
Hin1II	CATG	1 cut(s)	586
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	5 cut(s)	212, 275, 389, 446, 503
HphI	GGTGA	9 cut(s)	189, 246, 255, 289, 309, 366, 423, 480, 596
Hpy166II	GTNNAC	7 cut(s)	157, 217, 280, 337, 394, 451, 508
Hpy8I	GTNNAC	7 cut(s)	157, 217, 280, 337, 394, 451, 508
HpyCH4V	TGCA	1 cut(s)	157
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 154, 292, 406, 520
HpyF3I	CTNAG	9 cut(s)	204, 291, 348, 381, 405, 462, 483, 495, 519
Hsp92II	CATG	1 cut(s)	586
LpnPI	CCDG	9 cut(s)	117, 165, 201, 225, 288, 345, 402, 459, 516
LweI	GCATC	4 cut(s)	241, 304, 418, 532
MaeI	CTAG	4 cut(s)	23, 38, 570, 613
MaeIII	GTNAC	6 cut(s)	195, 252, 315, 372, 429, 486
MboII	GAAGA	1 cut(s)	26
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	1 cut(s)	76
MlyI	GAGTC	1 cut(s)	40
MspI	CCGG	5 cut(s)	212, 275, 389, 446, 503
MspR9I	CCNGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	5 cut(s)	50, 154, 292, 406, 520
NciI	CCSGG	1 cut(s)	275
NlaIII	CATG	1 cut(s)	586
NlaIV	GGNNCC	1 cut(s)	16
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	6 cut(s)	195, 252, 315, 372, 429, 486
PaqCI	CACCTGC	1 cut(s)	112
PkrI	GCNGC	4 cut(s)	150, 288, 402, 516
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
PpuMI	RGGWCCY	1 cut(s)	15
Psp5II	RGGWCCY	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	1 cut(s)	15
PspPPI	RGGWCCY	1 cut(s)	15
RsaI	GTAC	5 cut(s)	218, 338, 452, 509, 590
RsaNI	GTAC	5 cut(s)	217, 337, 451, 508, 589
SatI	GCNGC	4 cut(s)	149, 287, 401, 515
Sau96I	GGNCC	1 cut(s)	15
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	275
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	8 cut(s)	20, 71, 106, 382, 496, 559, 567, 598
SfaNI	GCATC	4 cut(s)	241, 304, 418, 532
SinI	GGWCC	1 cut(s)	15
Sse9I	AATT	1 cut(s)	76
SsiI	CCGC	7 cut(s)	134, 149, 200, 287, 401, 515, 607
SspMI	CTAG	4 cut(s)	23, 38, 570, 613
StyD4I	CCNGG	1 cut(s)	273
TasI	AATT	1 cut(s)	76
TatI	WGTACW	4 cut(s)	216, 336, 450, 507
TauI	GCSGC	4 cut(s)	151, 289, 403, 517
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	6 cut(s)	195, 252, 315, 372, 429, 486
Tsp45I	GTSAC	6 cut(s)	195, 252, 315, 372, 429, 486
TspDTI	ATGAA	1 cut(s)	571
TspRI	CASTG	1 cut(s)	159
VneI	GTGCAC	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	15
XmiI	GTMKAC	1 cut(s)	393
XspI	CTAG	4 cut(s)	23, 38, 570, 613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.