Rroxscaffold_7G00192280

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
33416817 .. 33424229
7413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00192280.1

Sequence Viewer

Length: 1182 bp
ATGGGGACCTCGCTAGTTTTTAGTATTCTAGTGGCAATAGTCGCCTTCGCCTCGCAAACCTCGGCAAACTACCATTACTCCTCTCCTCCACCACCTGCTTCTCCTCCTTACCACTACAAGTCACCACCGCCGCCAGTGCACTACGCACCACCCCATCATCCTTACTATCCTCCCAAGTCACCACCTAAGCCTCCGGTGTACCACTACAAATCTCCACCACCTCCATCACCACCACCACCAAAGGTGCCTTACCACTACAAAAGCCCTACCACTACAAGTCTCCTCCTCCTCCCAGTCTACTCTCCACCCCACATTCCATACCACTACAAGTCTCCACCACCACCACCACCACACAAGAAGCCCTACCACTACAAGTCTCCTCCTCCTCCAGTGTACTCTCCACCCCACATTCCATACCACTACAAGTCACCACCACCACCACCACCACACAAGAAGCCATACCACTACAAGTCTCCTCCTCCTCCAGTCTACTCTCCACCCCACATTCCATACCACTACAAGTCTCCACCACCACCACCACCACACAAGAAGCCCTACCACTACAAGTCTCCTCCTCCTCCAGTGTACTCTCCACCCCACATTCCATACCACTACAAGTCACCACCACCACCACCACCACACAAGAAGCCATACCACTACAAGTCTCCTCCTCCTCCAGTCTACTCTCCTCCACCCCACATTCCATACCACTACAAGTCTCCACCACCACCACCACCACACAAGAAGCCCTACCACTACAAGTCTCCTCCTCCTCCAGTCTACTCTCCACCCCACATTCCATACCACTACAAGTCTCCACCACCACCACCACCACACAAGAAGCCCCTACCACTACAAGTCTCCTCCTCCTCCAGTCTACTCTCCACCCCACATTCCATACCACTACAAGTCTCCACCACCACCACCACCACACAAGAAGCCCTACCACTACAAGTCTCCTCCTCCTCCAGTCTACTCTCCACCCCACATTCCATACCACTACAAGTCACCACCACCTGTTTACATCTACTCCTCACCTCCTCCTCCTCACCACTACTAGATAATGAGCTCACTTGCCTCCCTGGAATGCAGGTTGAGTATTGTTCTTCACTTTTTCACACTTTAATACCAACAGTAATCAAGTTAGAAGTGCTCTCTTCCCGTATATGTAAATCCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

393

Amino Acids

43.82

Weight (kDa)

9.67

Isoelectric Point (pI)

120.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 103
Acc36I ACCTGC 2 cut(s) 103, 1081
AccB1I GGYRCC 1 cut(s) 244
AccI GTMKAC 6 cut(s) 297, 489, 681, 780, 877, 973
AciI CCGC 2 cut(s) 128, 131
AfaI GTAC 3 cut(s) 200, 395, 587
AjnI CCWGG 1 cut(s) 1081
AluBI AGCT 1 cut(s) 1069
AluI AGCT 1 cut(s) 1069
Alw21I GWGCWC 3 cut(s) 141, 1071, 1155
Alw44I GTGCAC 1 cut(s) 137
ApaLI GTGCAC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 6
AsuHPI GGTGA 8 cut(s) 114, 171, 219, 420, 612, 1000, 1027, 1041
AvaII GGWCC 1 cut(s) 6
BaeGI GKGCMC 1 cut(s) 141
BanI GGYRCC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 1071
Bbv12I GWGCWC 3 cut(s) 141, 1071, 1155
BccI CCATC 2 cut(s) 162, 232
BciT130I CCWGG 1 cut(s) 1083
BfaI CTAG 3 cut(s) 14, 29, 1058
BfuAI ACCTGC 2 cut(s) 103, 1081
BisI GCNGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 132
Bme1390I CCNGG 1 cut(s) 1083
Bme18I GGWCC 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 6
BmiI GGNNCC 2 cut(s) 7, 246
BmrFI CCNGG 1 cut(s) 1083
BmrI ACTGGG 1 cut(s) 287
BmuI ACTGGG 1 cut(s) 287
BpmI CTGGAG 7 cut(s) 372, 468, 564, 660, 759, 856, 952
Bpu10I CCTNAGC 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 60, 1081
BsaWI WCCGGW 1 cut(s) 193
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 1014, 1044
Bse1I ACTGG 9 cut(s) 134, 293, 389, 485, 581, 677, 776, 873, 969
BseBI CCWGG 1 cut(s) 1083
BseDI CCNNGG 2 cut(s) 60, 1081
BseGI GGATG 1 cut(s) 157
BseNI ACTGG 9 cut(s) 134, 293, 389, 485, 581, 677, 776, 873, 969
BseSI GKGCMC 1 cut(s) 141
BshNI GGYRCC 1 cut(s) 244
BsiHKAI GWGCWC 3 cut(s) 141, 1071, 1155
BsiSI CCGG 1 cut(s) 194
BslFI GGGAC 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 19
BsmI GAATGC 1 cut(s) 1092
Bsp1286I GDGCHC 3 cut(s) 141, 1071, 1155
BspACI CCGC 2 cut(s) 128, 131
BspLI GGNNCC 2 cut(s) 7, 246
BspMI ACCTGC 2 cut(s) 103, 1081
BspT107I GGYRCC 1 cut(s) 244
BsrI ACTGG 9 cut(s) 134, 293, 389, 485, 581, 677, 776, 873, 969
BssECI CCNNGG 2 cut(s) 60, 1081
Bst2UI CCWGG 1 cut(s) 1083
Bst4CI ACNGT 1 cut(s) 1135
Bst6I CTCTTC 1 cut(s) 1162
BstDEI CTNAG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 41, 136
BstNI CCWGG 1 cut(s) 1083
BstSCI CCNGG 1 cut(s) 1081
BstSLI GKGCMC 1 cut(s) 141
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 3 cut(s) 141, 396, 588
BveI ACCTGC 2 cut(s) 103, 1081
Cfr13I GGNCC 1 cut(s) 6
Csp6I GTAC 3 cut(s) 199, 394, 586
CviQI GTAC 3 cut(s) 199, 394, 586
DdeI CTNAG 1 cut(s) 186
Eam1104I CTCTTC 1 cut(s) 1162
EarI CTCTTC 1 cut(s) 1162
Ecl136II GAGCTC 1 cut(s) 1069
Eco24I GRGCYC 1 cut(s) 1071
Eco47I GGWCC 1 cut(s) 6
Eco53kI GAGCTC 1 cut(s) 1069
EcoICRI GAGCTC 1 cut(s) 1069
EcoO109I RGGNCCY 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 1081
EcoT38I GRGCYC 1 cut(s) 1071
FaqI GGGAC 1 cut(s) 19
FblI GTMKAC 6 cut(s) 297, 489, 681, 780, 877, 973
Fnu4HI GCNGC 1 cut(s) 131
FokI GGATG 1 cut(s) 144
FriOI GRGCYC 1 cut(s) 1071
Fsp4HI GCNGC 1 cut(s) 131
FspBI CTAG 3 cut(s) 14, 29, 1058
GluI GCNGC 1 cut(s) 131
GsuI CTGGAG 7 cut(s) 372, 468, 564, 660, 759, 856, 952
HapII CCGG 1 cut(s) 194
HpaII CCGG 1 cut(s) 194
HphI GGTGA 8 cut(s) 114, 171, 219, 420, 612, 1000, 1027, 1041
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 1135
HpyCH4V TGCA 2 cut(s) 139, 1090
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 136
HpyF3I CTNAG 1 cut(s) 186
MaeI CTAG 3 cut(s) 14, 29, 1058
MaeIII GTNAC 5 cut(s) 120, 177, 426, 618, 1006
MboII GAAGA 2 cut(s) 1098, 1149
MhlI GDGCHC 3 cut(s) 141, 1071, 1155
MseI TTAA 2 cut(s) 1124, 1180
MspI CCGG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 1083
Mva1269I GAATGC 1 cut(s) 1092
MvaI CCWGG 1 cut(s) 1083
MwoI GCNNNNNNNGC 2 cut(s) 41, 136
NlaIV GGNNCC 2 cut(s) 7, 246
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 5 cut(s) 120, 177, 426, 618, 1006
PaqCI CACCTGC 1 cut(s) 103
PctI GAATGC 1 cut(s) 1092
PkrI GCNGC 1 cut(s) 132
PpuMI RGGWCCY 1 cut(s) 6
Psp124BI GAGCTC 1 cut(s) 1071
Psp5II RGGWCCY 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 1081
PspGI CCWGG 1 cut(s) 1081
PspN4I GGNNCC 2 cut(s) 7, 246
PspPI GGNCC 1 cut(s) 6
PspPPI RGGWCCY 1 cut(s) 6
RsaI GTAC 3 cut(s) 200, 395, 587
RsaNI GTAC 3 cut(s) 199, 394, 586
SacI GAGCTC 1 cut(s) 1071
SaqAI TTAA 2 cut(s) 1124, 1180
SatI GCNGC 1 cut(s) 131
Sau96I GGNCC 1 cut(s) 6
ScrFI CCNGG 1 cut(s) 1083
SduI GDGCHC 3 cut(s) 141, 1071, 1155
SinI GGWCC 1 cut(s) 6
SsiI CCGC 2 cut(s) 128, 131
SspMI CTAG 3 cut(s) 14, 29, 1058
SstI GAGCTC 1 cut(s) 1071
StyD4I CCNGG 1 cut(s) 1081
TaaI ACNGT 1 cut(s) 1135
TatI WGTACW 2 cut(s) 393, 585
TauI GCSGC 1 cut(s) 133
Tru1I TTAA 2 cut(s) 1124, 1180
Tru9I TTAA 2 cut(s) 1124, 1180
TscAI CASTG 3 cut(s) 141, 396, 588
TseFI GTSAC 5 cut(s) 120, 177, 426, 618, 1006
Tsp45I GTSAC 5 cut(s) 120, 177, 426, 618, 1006
TspRI CASTG 3 cut(s) 141, 396, 588
VneI GTGCAC 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 6
XmiI GTMKAC 6 cut(s) 297, 489, 681, 780, 877, 973
XspI CTAG 3 cut(s) 14, 29, 1058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.