pycom05g01220

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
1568976 .. 1569557
582 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g01220.1

Sequence Viewer

Length: 582 bp
ATGGGGAAAATGGGGCCTTTTCAAGTGACCTCTCTTGTGGTCACTCTCCTAGTGGCAATAGTCTCTCTCACATTGCCTTCAGAAACTTCAGCTAACCACCCTGACTCATCTCCACCACCACCGGCTTCTCCTCCCTACCACCCCAAGTCACCACCACCATCACCAAAGCCTTACCACTACAAATCTCCCCCACCACCTCCTCATCCAGTTCACTCACCACCACCTCATCCAGTTCACTCCCCACCACCACCCAAGGAGCCTTACCACTACAAATCTCCACCACCACCACCCAAGAAACATCACCATCACAAGTCTCCTCCACCATCACCCAAGAAACATCACCATCACAAGTCTCCCCCACCACCACCCAAGAAACCTCACCATCACAAGTCTCCACCACCACCCAAGAAGCCCTACCCCCCGGTGCACTCACCCCCACCACCACACAAGAAGCCTCACCACCCAGTTCACTCACCACCACCACCACCACCTATTAAACCTTACAAGCCACCAACTCCTCCAGCAGCTCACCCACCACCCGCTTACATCTATTCATCACCCCCACCTCCTCACCACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

194

Amino Acids

21.12

Weight (kDa)

10.08

Isoelectric Point (pI)

114.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 540
AcuI CTGAAG 2 cut(s) 63, 72
AgsI TTSAA 1 cut(s) 23
AluBI AGCT 2 cut(s) 92, 527
AluI AGCT 2 cut(s) 92, 527
Alw21I GWGCWC 1 cut(s) 429
Alw26I GTCTC 4 cut(s) 67, 318, 357, 396
Alw44I GTGCAC 1 cut(s) 425
AoxI GGCC 1 cut(s) 14
ApaLI GTGCAC 1 cut(s) 425
ApeKI GCWGC 1 cut(s) 524
AspS9I GGNCC 1 cut(s) 14
AsuC2I CCSGG 1 cut(s) 422
BaeGI GKGCMC 1 cut(s) 429
Bbv12I GWGCWC 1 cut(s) 429
BbvI GCAGC 1 cut(s) 536
BccI CCATC 5 cut(s) 166, 312, 331, 351, 390
BcnI CCSGG 1 cut(s) 422
BcoDI GTCTC 4 cut(s) 67, 318, 357, 396
BfaI CTAG 2 cut(s) 50, 580
BisI GCNGC 1 cut(s) 525
BlsI GCNGC 1 cut(s) 526
Bme1390I CCNGG 1 cut(s) 422
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 2 cut(s) 15, 258
BmrFI CCNGG 1 cut(s) 422
BmrI ACTGGG 1 cut(s) 458
BmuI ACTGGG 1 cut(s) 458
BpmI CTGGAG 1 cut(s) 504
BpuMI CCSGG 1 cut(s) 422
BsaJI CCNNGG 2 cut(s) 252, 420
Bse118I RCCGGY 1 cut(s) 121
Bse1I ACTGG 3 cut(s) 206, 230, 464
Bse3DI GCAATG 1 cut(s) 71
BseDI CCNNGG 2 cut(s) 252, 420
BseGI GGATG 2 cut(s) 202, 226
BseMI GCAATG 1 cut(s) 71
BseNI ACTGG 3 cut(s) 206, 230, 464
BseRI GAGGAG 5 cut(s) 120, 189, 306, 507, 558
BseSI GKGCMC 1 cut(s) 429
BseXI GCAGC 1 cut(s) 536
BshFI GGCC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 429
BsiSI CCGG 2 cut(s) 122, 422
BsmAI GTCTC 4 cut(s) 67, 318, 357, 396
BsnI GGCC 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 429
BspACI CCGC 1 cut(s) 540
BspANI GGCC 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 15, 258
BsrDI GCAATG 1 cut(s) 71
BsrFI RCCGGY 1 cut(s) 121
BsrI ACTGG 3 cut(s) 206, 230, 464
BssAI RCCGGY 1 cut(s) 121
BssECI CCNNGG 2 cut(s) 252, 420
BssT1I CCWWGG 1 cut(s) 252
BstF5I GGATG 2 cut(s) 202, 226
BstMAI GTCTC 4 cut(s) 67, 318, 357, 396
BstSCI CCNGG 1 cut(s) 420
BstSLI GKGCMC 1 cut(s) 429
BstV1I GCAGC 1 cut(s) 536
BsuRI GGCC 1 cut(s) 16
BtsCI GGATG 2 cut(s) 202, 226
Cfr10I RCCGGY 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 14
CviJI RGCY 9 cut(s) 16, 92, 125, 169, 259, 412, 454, 508, 527
CviKI_1 RGCY 9 cut(s) 16, 92, 125, 169, 259, 412, 454, 508, 527
Eco130I CCWWGG 1 cut(s) 252
Eco57I CTGAAG 2 cut(s) 63, 72
EcoO109I RGGNCCY 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FauI CCCGC 1 cut(s) 547
Fnu4HI GCNGC 1 cut(s) 525
FokI GGATG 2 cut(s) 189, 213
Fsp4HI GCNGC 1 cut(s) 525
FspBI CTAG 2 cut(s) 50, 580
GluI GCNGC 1 cut(s) 525
GsuI CTGGAG 1 cut(s) 504
HaeIII GGCC 1 cut(s) 16
HapII CCGG 2 cut(s) 122, 422
HinfI GANTC 1 cut(s) 104
HpaII CCGG 2 cut(s) 122, 422
Hpy166II GTNNAC 4 cut(s) 211, 235, 427, 469
Hpy188I TCNGA 1 cut(s) 82
Hpy8I GTNNAC 4 cut(s) 211, 235, 427, 469
HpyAV CCTTC 1 cut(s) 87
HpyCH4V TGCA 1 cut(s) 427
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 7 cut(s) 114, 135, 219, 243, 435, 477, 534
Lsp1109I GCAGC 1 cut(s) 536
MaeI CTAG 2 cut(s) 50, 580
MaeIII GTNAC 3 cut(s) 25, 40, 147
MhlI GDGCHC 1 cut(s) 429
MlyI GAGTC 1 cut(s) 98
MseI TTAA 1 cut(s) 495
MspI CCGG 2 cut(s) 122, 422
MspR9I CCNGG 1 cut(s) 422
NciI CCSGG 1 cut(s) 422
NlaIV GGNNCC 2 cut(s) 15, 258
NmuCI GTSAC 3 cut(s) 25, 40, 147
PkrI GCNGC 1 cut(s) 526
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PspN4I GGNNCC 2 cut(s) 15, 258
PspPI GGNCC 1 cut(s) 14
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 1 cut(s) 525
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 422
SduI GDGCHC 1 cut(s) 429
SetI ASST 9 cut(s) 32, 94, 199, 226, 379, 493, 502, 529, 568
SsiI CCGC 1 cut(s) 540
SspMI CTAG 2 cut(s) 50, 580
StyD4I CCNGG 1 cut(s) 420
StyI CCWWGG 1 cut(s) 252
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TseFI GTSAC 3 cut(s) 25, 40, 147
TseI GCWGC 1 cut(s) 524
Tsp45I GTSAC 3 cut(s) 25, 40, 147
TspDTI ATGAA 1 cut(s) 543
VneI GTGCAC 1 cut(s) 425
XspI CTAG 2 cut(s) 50, 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.