MD05G1100000.v1.1

Mitochondrial outer membrane protein porin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0014819
Physical Location & Seq
Forward (+)
20737649 .. 20738242
594 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1100000.v1.1.491

Sequence Viewer

Length: 402 bp
ATGGAGGCAGAATACAAAACCGCTTCCAGCACTTTCTCCAAATGTAATGCAGGCATTAGCATGAAGAGTCTCAATTCTGATGCTTCAATAATTCTGGGAAACAAGGGTGGCTTGGTAACAGCATCGTACGTTCATTATCTTGATCAAGAAAAGAAGAATGCAGCAGTGGTGGAGTTCACTCAGAACCTCTCAACAAAGAGAAGCACCTTGACAGTTGGAGGATCGTGCATGGTTGATCATCAAACAGTGGTGAAAGCTAGACTCGATGGTAGCGGAGATGTTAAGACTCTTCTGCAGTACAGTATTAGACCCAAGTCGCGCTTGTCTATCTCCGGCGAGTTCAACACCAAGGCACTTGACAGGATTCCTAAAATTGGACTGGCACTTTCTCTTGCCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166
Pfam Domains
Protein Families
Porin_3

Protein Analysis

134

Amino Acids

14.24

Weight (kDa)

9.45

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Porin_3 PF01459 2 - 126 1e-23 Eukaryotic porin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014819)

Species Orthologous Gene IDs
malus_domestica MD05G1100000.v1.1 MD05G1100300.v1.1
prunus_persica Prupe.8G144700_v2.0.a1
pyrus_communis pycom05g09890
rosa_chinensis RchiOBHm_Chr6g0253791
rosa_laevigata RLG00000014970
rosa_multiflora Rmu_sc0006323.1_g000019
rosa_roxburghii Rroxscaffold_7G00211520
rosa_rugosa Rorug05G0547200 Rorug05G0547200
rosa_samantha Rh6AG062800 Rh6BG056100 Rh6CG055600 Rh6CG056200 Rh6DG053200 Rh6DG054000
rosa_wichuraiana Rw6G005590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 319
AciI CCGC 2 cut(s) 21, 273
AclWI GGATC 1 cut(s) 229
AfaI GTAC 2 cut(s) 128, 299
AfiI CCNNNNNNNGG 1 cut(s) 374
AgsI TTSAA 2 cut(s) 87, 343
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 1 cut(s) 229
ApeKI GCWGC 1 cut(s) 161
AspLEI GCGC 1 cut(s) 321
AsuHPI GGTGA 1 cut(s) 262
BbvI GCAGC 1 cut(s) 173
BccI CCATC 1 cut(s) 260
BclI TGATCA 2 cut(s) 142, 235
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 293
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
BmsI GCATC 2 cut(s) 70, 131
BoxI GACNNNNGTC 1 cut(s) 313
BsaJI CCNNGG 1 cut(s) 348
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse1I ACTGG 1 cut(s) 384
BseDI CCNNGG 1 cut(s) 348
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMII CTCAG 1 cut(s) 194
BseNI ACTGG 1 cut(s) 384
BseXI GCAGC 1 cut(s) 173
Bsh1236I CGCG 1 cut(s) 319
BsiSI CCGG 1 cut(s) 333
BsiWI CGTACG 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 374
BsmAI GTCTC 1 cut(s) 74
BsmI GAATGC 1 cut(s) 163
Bsp143I GATC 3 cut(s) 142, 221, 235
BspACI CCGC 2 cut(s) 21, 273
BspCNI CTCAG 1 cut(s) 193
BspFNI CGCG 1 cut(s) 319
BspMAI CTGCAG 1 cut(s) 297
BspPI GGATC 1 cut(s) 229
BsrI ACTGG 1 cut(s) 384
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 3 cut(s) 142, 221, 235
BssT1I CCWWGG 1 cut(s) 348
Bst4CI ACNGT 3 cut(s) 214, 247, 302
Bst6I CTCTTC 2 cut(s) 59, 294
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 180
BstFNI CGCG 1 cut(s) 319
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 3 cut(s) 145, 224, 238
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 3 cut(s) 142, 221, 235
BstPAI GACNNNNGTC 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 293
BstUI CGCG 1 cut(s) 319
BstV1I GCAGC 1 cut(s) 173
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 171, 252
Cac8I GCNNGC 1 cut(s) 52
CfoI GCGC 1 cut(s) 321
Csp6I GTAC 2 cut(s) 127, 298
CviAII CATG 2 cut(s) 61, 229
CviJI RGCY 2 cut(s) 111, 257
CviKI_1 RGCY 2 cut(s) 111, 257
CviQI GTAC 2 cut(s) 127, 298
DdeI CTNAG 1 cut(s) 180
DpnI GATC 3 cut(s) 144, 223, 237
DpnII GATC 3 cut(s) 142, 221, 235
Eam1104I CTCTTC 2 cut(s) 59, 294
EarI CTCTTC 2 cut(s) 59, 294
Eco130I CCWWGG 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 2 cut(s) 64, 232
FaiI YATR 2 cut(s) 62, 230
FalI AAGNNNNNCTT 4 cut(s) 95, 127, 305, 337
FatI CATG 2 cut(s) 60, 228
FbaI TGATCA 2 cut(s) 142, 235
Fnu4HI GCNGC 1 cut(s) 162
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 1 cut(s) 258
GlaI GCGC 1 cut(s) 320
GluI GCNGC 1 cut(s) 162
HapII CCGG 1 cut(s) 333
HhaI GCGC 1 cut(s) 321
Hin1II CATG 2 cut(s) 64, 232
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HinfI GANTC 4 cut(s) 67, 261, 286, 364
HpaII CCGG 1 cut(s) 333
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 2 cut(s) 79, 183
Hpy188III TCNNGA 2 cut(s) 140, 146
Hpy8I GTNNAC 1 cut(s) 177
HpyCH4III ACNGT 3 cut(s) 214, 247, 302
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 4 cut(s) 50, 161, 228, 295
HpyF3I CTNAG 1 cut(s) 180
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 2 cut(s) 64, 232
HspAI GCGC 1 cut(s) 319
Ksp22I TGATCA 2 cut(s) 142, 235
Kzo9I GATC 3 cut(s) 142, 221, 235
LpnPI CCDG 6 cut(s) 36, 40, 80, 346, 346, 365
Lsp1109I GCAGC 1 cut(s) 173
LweI GCATC 2 cut(s) 70, 131
MaeI CTAG 1 cut(s) 258
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 115
MalI GATC 3 cut(s) 144, 223, 237
MboI GATC 3 cut(s) 142, 221, 235
MboII GAAGA 3 cut(s) 76, 166, 281
MluCI AATT 3 cut(s) 73, 90, 372
MlyI GAGTC 3 cut(s) 76, 255, 280
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 2 cut(s) 197, 212
MseI TTAA 2 cut(s) 282, 400
MslI CAYNNNNRTG 1 cut(s) 59
MspI CCGG 1 cut(s) 333
Mva1269I GAATGC 1 cut(s) 163
MvnI CGCG 1 cut(s) 319
NdeII GATC 3 cut(s) 142, 221, 235
NlaIII CATG 2 cut(s) 64, 232
PctI GAATGC 1 cut(s) 163
PfeI GAWTC 1 cut(s) 364
Pfl23II CGTACG 1 cut(s) 126
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 3 cut(s) 75, 255, 280
PpsI GAGTC 3 cut(s) 75, 255, 280
PshAI GACNNNNGTC 1 cut(s) 313
PspLI CGTACG 1 cut(s) 126
PstI CTGCAG 1 cut(s) 297
RsaI GTAC 2 cut(s) 128, 299
RsaNI GTAC 2 cut(s) 127, 298
RseI CAYNNNNRTG 1 cut(s) 59
SaqAI TTAA 2 cut(s) 282, 400
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 3 cut(s) 142, 221, 235
SchI GAGTC 3 cut(s) 76, 255, 280
SetI ASST 4 cut(s) 132, 189, 209, 259
SfaNI GCATC 2 cut(s) 70, 131
SfcI CTRYAG 1 cut(s) 293
SmiMI CAYNNNNRTG 1 cut(s) 59
Sse9I AATT 3 cut(s) 73, 90, 372
SsiI CCGC 2 cut(s) 21, 273
SspMI CTAG 1 cut(s) 258
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 3 cut(s) 214, 247, 302
TaiI ACGT 1 cut(s) 132
TaqI TCGA 1 cut(s) 264
TasI AATT 3 cut(s) 73, 90, 372
TatI WGTACW 1 cut(s) 297
TfiI GAWTC 1 cut(s) 364
Tru1I TTAA 2 cut(s) 282, 400
Tru9I TTAA 2 cut(s) 282, 400
TscAI CASTG 2 cut(s) 171, 252
TseI GCWGC 1 cut(s) 161
TspDTI ATGAA 2 cut(s) 77, 122
TspRI CASTG 2 cut(s) 171, 252
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.