Rh6DG053200

Mitochondrial outer membrane protein porin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0014819
Physical Location & Seq
Forward (+)
5566586 .. 5567231
646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG053200.1

Sequence Viewer

Length: 354 bp
ATGGGCAAGTCTAATCATAAAAAACACAAGCACAATCACAAGCAACCTCTATTTTTCTCCGAGTTTGCTCAGAAATCTACAGAGTTGCTTACAAAGGGCTACTCCAGAGGCCAGATATTTAGCTTCACAACCCACAAAAATGAACTGGACCTTACTTCAACCATTGCAAGTAATGGAAGACACACAACTGCAGGTGTAGTAGGAGCATACCCATATAAAAATGCAACCTTTAGAGTTGGAGTTGACAAGGATTCAAAAATTGCAGCGAACTTCACTATACGTGAGAAGTTTCTTTCCGGTACAAAGACTACAGCTTCATTGAGCTTCCCTGATTACAAATCTAGCAAGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166
Pfam Domains
Protein Families
Porin_3

Protein Analysis

117

Amino Acids

13.05

Weight (kDa)

10.04

Isoelectric Point (pI)

24.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Porin_3 PF01459 16 - 115 6.7e-07 Eukaryotic porin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014819)

Species Orthologous Gene IDs
malus_domestica MD05G1100000.v1.1 MD05G1100300.v1.1
prunus_persica Prupe.8G144700_v2.0.a1
pyrus_communis pycom05g09890
rosa_chinensis RchiOBHm_Chr6g0253791
rosa_laevigata RLG00000014970
rosa_multiflora Rmu_sc0006323.1_g000019
rosa_roxburghii Rroxscaffold_7G00211520
rosa_rugosa Rorug05G0547200 Rorug05G0547200
rosa_samantha Rh6AG062800 Rh6BG056100 Rh6CG055600 Rh6CG056200 Rh6DG053200 Rh6DG054000
rosa_wichuraiana Rw6G005590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 182
Acc36I ACCTGC 1 cut(s) 182
AfaI GTAC 1 cut(s) 301
AgsI TTSAA 2 cut(s) 159, 255
AluBI AGCT 3 cut(s) 123, 314, 324
AluI AGCT 3 cut(s) 123, 314, 324
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 148
AvaII GGWCC 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 275
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 3 cut(s) 78, 189, 309
BfuAI ACCTGC 1 cut(s) 182
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 88
BsaAI YACGTR 1 cut(s) 281
BsaWI WCCGGW 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 162
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 1 cut(s) 150
BseXI GCAGC 1 cut(s) 275
BshFI GGCC 1 cut(s) 111
BsiSI CCGG 1 cut(s) 297
BsnI GGCC 1 cut(s) 111
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 82
BspMAI CTGCAG 1 cut(s) 193
BspMI ACCTGC 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 162
BsrI ACTGG 1 cut(s) 150
BstBAI YACGTR 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 69
BstSFI CTRYAG 3 cut(s) 78, 189, 309
BstV1I GCAGC 1 cut(s) 275
BstV2I GAAGAC 1 cut(s) 184
BsuRI GGCC 1 cut(s) 111
BveI ACCTGC 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 300
CviJI RGCY 5 cut(s) 99, 111, 123, 314, 324
CviKI_1 RGCY 5 cut(s) 99, 111, 123, 314, 324
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 148
FaiI YATR 6 cut(s) 18, 208, 214, 216, 278, 352
Fnu4HI GCNGC 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 1 cut(s) 342
GluI GCNGC 1 cut(s) 264
GsuI CTGGAG 1 cut(s) 88
HaeIII GGCC 1 cut(s) 111
HapII CCGG 1 cut(s) 297
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 1 cut(s) 251
HpaII CCGG 1 cut(s) 297
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 2 cut(s) 61, 72
Hpy188III TCNNGA 1 cut(s) 105
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 4 cut(s) 167, 191, 224, 263
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 1 cut(s) 280
LmnI GCTCC 1 cut(s) 203
LpnPI CCDG 6 cut(s) 118, 125, 131, 177, 310, 342
Lsp1109I GCAGC 1 cut(s) 275
MaeI CTAG 1 cut(s) 342
MaeII ACGT 1 cut(s) 280
MboII GAAGA 1 cut(s) 189
MluCI AATT 1 cut(s) 258
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 2 cut(s) 57, 101
MslI CAYNNNNRTG 1 cut(s) 138
MspI CCGG 1 cut(s) 297
PaqCI CACCTGC 1 cut(s) 182
PfeI GAWTC 1 cut(s) 251
PkrI GCNGC 1 cut(s) 265
Ppu21I YACGTR 1 cut(s) 281
PspPI GGNCC 1 cut(s) 148
PstI CTGCAG 1 cut(s) 193
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
RseI CAYNNNNRTG 1 cut(s) 138
SatI GCNGC 1 cut(s) 264
Sau96I GGNCC 1 cut(s) 148
SetI ASST 9 cut(s) 49, 125, 153, 196, 230, 283, 316, 326, 351
SfcI CTRYAG 3 cut(s) 78, 189, 309
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 138
Sse9I AATT 1 cut(s) 258
SspMI CTAG 1 cut(s) 342
TaiI ACGT 1 cut(s) 283
TasI AATT 1 cut(s) 258
TfiI GAWTC 1 cut(s) 251
TseI GCWGC 1 cut(s) 263
TspDTI ATGAA 2 cut(s) 156, 306
VpaK11BI GGWCC 1 cut(s) 148
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.