pycom05g09890

Mitochondrial outer membrane protein porin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0014819
Physical Location & Seq
Forward (+)
13177115 .. 13178645
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g09890.5

Sequence Viewer

Length: 891 bp
ATGAGCAAGTCCTCCTCCAAGCCTAAGCATAAAAGCAAGAGCAAGAGCAAAAACACAACCAGCAGCAAGGGCCCTCCACTTTTCTCCGACTTTGGTCACAAAGCTAAAGACTTGCTTACAGCGGGATATTCCAAGGGCCAGAGGTTCACCTTCGCATCCCACATTGATGGCGGAGCGAACCTTACATGTTCAACCTCCGCGAAGATTGGAGGACGATCAACTGCAGCTGTTGCAGGATCGTACACATACAAGAATGCCACCTTCAACTGCCGAATTGATACGGATTCAAAAGTTGCTGGAACATTAAGTACGAAGTTTTTGTCAAGCACAAAGACTTCGGCTTCATTCAGCTTGCCCGAGTACAAGTCTAGCAAGCTCGGGTTTCAAACACGCCAAGAATATGGTGCCGCAGCTGTGTCTGTTTCTCTGTGCCAGTCTCCCACAATCAACCTTTCAGCAACCGTCGGTAGTGCAAGCATTGTCATCGGTATGGAGGCAGAATACAAAACTGCTTCCAGCACTTTCTCCAAATTTAATGCAGGCATTAGCATGAAGAGTCTCAATTCTGATGCTTCAATAATTCTGGGAAACAAGGGTGGCTTGATAACAGCATCGTACGTTCATTATCGTGGTCAAGAAAAGAAGAATGCAGCAGTGGTAGAGTTCACTCAGAACCTCTCAACAAAGAACACCACCTTGACAGTTGGAGGATCGTGCATGGTTGATCATCAAACAGTGGTGAAAGCTAGACTCGATGGTCGTGGAGATGTTAAGACTGTCCTGCGGTACAGTATTAGACCAAAGTCGTGCTTGTCTATCTCAGGCGAGTTCAACACCAAGGCACTTGACAAGATTCCTAAAATTGGACTGGCACTTTCTCTTGCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166
Pfam Domains
Protein Families
Porin_3

Protein Analysis

297

Amino Acids

31.2

Weight (kDa)

9.89

Isoelectric Point (pI)

28.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014819)

Species Orthologous Gene IDs
malus_domestica MD05G1100000.v1.1 MD05G1100300.v1.1
prunus_persica Prupe.8G144700_v2.0.a1
pyrus_communis pycom05g09890
rosa_chinensis RchiOBHm_Chr6g0253791
rosa_laevigata RLG00000014970
rosa_multiflora Rmu_sc0006323.1_g000019
rosa_roxburghii Rroxscaffold_7G00211520
rosa_rugosa Rorug05G0547200 Rorug05G0547200
rosa_samantha Rh6AG062800 Rh6BG056100 Rh6CG055600 Rh6CG056200 Rh6DG053200 Rh6DG054000
rosa_wichuraiana Rw6G005590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 756
AccB1I GGYRCC 1 cut(s) 404
AccII CGCG 1 cut(s) 200
AciI CCGC 5 cut(s) 122, 171, 198, 408, 784
AclWI GGATC 2 cut(s) 244, 718
AcsI RAATTY 1 cut(s) 530
AfaI GTAC 5 cut(s) 242, 310, 362, 617, 788
AfiI CCNNNNNNNGG 1 cut(s) 863
AflIII ACRYGT 1 cut(s) 185
AgsI TTSAA 6 cut(s) 192, 265, 288, 386, 576, 832
AluBI AGCT 6 cut(s) 104, 227, 351, 376, 413, 746
AluI AGCT 6 cut(s) 104, 227, 351, 376, 413, 746
Alw26I GTCTC 2 cut(s) 441, 563
AlwI GGATC 2 cut(s) 244, 718
Ama87I CYCGRG 2 cut(s) 356, 377
AoxI GGCC 2 cut(s) 70, 136
ApaI GGGCCC 1 cut(s) 74
ApeKI GCWGC 4 cut(s) 63, 224, 410, 650
ApoI RAATTY 1 cut(s) 530
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
AspS9I GGNCC 3 cut(s) 70, 71, 136
AsuHPI GGTGA 2 cut(s) 139, 751
AvaI CYCGRG 2 cut(s) 356, 377
BaeGI GKGCMC 1 cut(s) 74
BanI GGYRCC 1 cut(s) 404
BanII GRGCYC 1 cut(s) 74
BbvI GCAGC 4 cut(s) 75, 236, 422, 662
BccI CCATC 2 cut(s) 161, 749
BcgI CGANNNNNNTGC 2 cut(s) 466, 500
BclI TGATCA 1 cut(s) 724
BcoDI GTCTC 2 cut(s) 441, 563
BfaI CTAG 2 cut(s) 369, 747
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 5 cut(s) 64, 225, 408, 411, 651
BlsI GCNGC 5 cut(s) 65, 226, 409, 412, 652
BmeT110I CYCGRG 2 cut(s) 356, 377
BmgT120I GGNCC 3 cut(s) 70, 71, 136
BmiI GGNNCC 2 cut(s) 72, 406
BmsI GCATC 3 cut(s) 164, 559, 620
BoxI GACNNNNGTC 2 cut(s) 93, 802
Bpu10I CCTNAGC 1 cut(s) 24
BsaJI CCNNGG 2 cut(s) 132, 837
Bsc4I CCNNNNNNNGG 1 cut(s) 863
Bse1I ACTGG 2 cut(s) 433, 873
BseDI CCNNGG 2 cut(s) 132, 837
BseGI GGATG 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 863
BseMII CTCAG 2 cut(s) 683, 834
BseNI ACTGG 2 cut(s) 433, 873
BseRI GAGGAG 1 cut(s) 4
BseSI GKGCMC 1 cut(s) 74
BseXI GCAGC 4 cut(s) 75, 236, 422, 662
Bsh1236I CGCG 1 cut(s) 200
BshFI GGCC 2 cut(s) 72, 138
BshNI GGYRCC 1 cut(s) 404
BsiHKCI CYCGRG 2 cut(s) 356, 377
BsiWI CGTACG 1 cut(s) 615
BslI CCNNNNNNNGG 1 cut(s) 863
BsmAI GTCTC 2 cut(s) 441, 563
BsmI GAATGC 2 cut(s) 259, 652
BsnI GGCC 2 cut(s) 72, 138
BsoBI CYCGRG 2 cut(s) 356, 377
Bsp120I GGGCCC 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 4 cut(s) 215, 236, 710, 724
BspACI CCGC 5 cut(s) 122, 171, 198, 408, 784
BspANI GGCC 2 cut(s) 72, 138
BspCNI CTCAG 2 cut(s) 682, 833
BspFNI CGCG 1 cut(s) 200
BspLI GGNNCC 2 cut(s) 72, 406
BspMAI CTGCAG 1 cut(s) 226
BspPI GGATC 2 cut(s) 244, 718
BspT107I GGYRCC 1 cut(s) 404
BsrI ACTGG 2 cut(s) 433, 873
BssECI CCNNGG 2 cut(s) 132, 837
BssMI GATC 4 cut(s) 215, 236, 710, 724
BssT1I CCWWGG 2 cut(s) 132, 837
Bst4CI ACNGT 5 cut(s) 463, 703, 736, 778, 791
Bst6I CTCTTC 1 cut(s) 548
BstAPI GCANNNNNTGC 1 cut(s) 230
BstC8I GCNNGC 4 cut(s) 353, 374, 475, 541
BstDEI CTNAG 3 cut(s) 24, 669, 820
BstF5I GGATG 1 cut(s) 155
BstFNI CGCG 1 cut(s) 200
BstKTI GATC 4 cut(s) 218, 239, 713, 727
BstMAI GTCTC 2 cut(s) 441, 563
BstMBI GATC 4 cut(s) 215, 236, 710, 724
BstMWI GCNNNNNNNGC 2 cut(s) 69, 230
BstNSI RCATGY 1 cut(s) 189
BstPAI GACNNNNGTC 2 cut(s) 93, 802
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 74
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 4 cut(s) 75, 236, 422, 662
BstXI CCANNNNNNTGG 2 cut(s) 167, 401
BsuRI GGCC 2 cut(s) 72, 138
BtsCI GGATG 1 cut(s) 155
BtsI GCAGTG 1 cut(s) 660
BtsIMutI CAGTG 2 cut(s) 660, 741
Cac8I GCNNGC 4 cut(s) 353, 374, 475, 541
Cfr13I GGNCC 3 cut(s) 70, 71, 136
Csp6I GTAC 5 cut(s) 241, 309, 361, 616, 787
CviAII CATG 3 cut(s) 186, 550, 718
CviQI GTAC 5 cut(s) 241, 309, 361, 616, 787
DdeI CTNAG 3 cut(s) 24, 669, 820
DpnI GATC 4 cut(s) 217, 238, 712, 726
DpnII GATC 4 cut(s) 215, 236, 710, 724
DrdI GACNNNNNNGTC 1 cut(s) 756
DseDI GACNNNNNNGTC 1 cut(s) 756
Eam1104I CTCTTC 1 cut(s) 548
EarI CTCTTC 1 cut(s) 548
EciI GGCGGA 1 cut(s) 186
Eco130I CCWWGG 2 cut(s) 132, 837
Eco24I GRGCYC 1 cut(s) 74
Eco88I CYCGRG 2 cut(s) 356, 377
EcoO109I RGGNCCY 2 cut(s) 70, 71
EcoT14I CCWWGG 2 cut(s) 132, 837
EcoT38I GRGCYC 1 cut(s) 74
ErhI CCWWGG 2 cut(s) 132, 837
FaeI CATG 3 cut(s) 189, 553, 721
FaiI YATR 7 cut(s) 30, 187, 247, 402, 491, 551, 719
FalI AAGNNNNNCTT 6 cut(s) 99, 131, 584, 616, 794, 826
FatI CATG 3 cut(s) 185, 549, 717
FauI CCCGC 1 cut(s) 115
FbaI TGATCA 1 cut(s) 724
Fnu4HI GCNGC 5 cut(s) 64, 225, 408, 411, 651
FokI GGATG 1 cut(s) 142
FriOI GRGCYC 1 cut(s) 74
Fsp4HI GCNGC 5 cut(s) 64, 225, 408, 411, 651
FspBI CTAG 2 cut(s) 369, 747
GluI GCNGC 5 cut(s) 64, 225, 408, 411, 651
HaeIII GGCC 2 cut(s) 72, 138
Hin1II CATG 3 cut(s) 189, 553, 721
HinfI GANTC 4 cut(s) 284, 556, 750, 853
HphI GGTGA 2 cut(s) 139, 751
Hpy166II GTNNAC 3 cut(s) 147, 243, 666
Hpy188I TCNGA 3 cut(s) 88, 568, 672
Hpy188III TCNNGA 1 cut(s) 635
Hpy8I GTNNAC 3 cut(s) 147, 243, 666
Hpy99I CGWCG 1 cut(s) 467
HpyAV CCTTC 2 cut(s) 160, 271
HpyCH4III ACNGT 5 cut(s) 463, 703, 736, 778, 791
HpyCH4IV ACGT 1 cut(s) 618
HpyCH4V TGCA 6 cut(s) 224, 233, 473, 539, 650, 717
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 230
HpyF3I CTNAG 3 cut(s) 24, 669, 820
HpySE526I ACGT 1 cut(s) 618
Hsp92II CATG 3 cut(s) 189, 553, 721
Ksp22I TGATCA 1 cut(s) 724
Kzo9I GATC 4 cut(s) 215, 236, 710, 724
LmnI GCTCC 2 cut(s) 173, 889
Lsp1109I GCAGC 4 cut(s) 75, 236, 422, 662
LweI GCATC 3 cut(s) 164, 559, 620
MaeI CTAG 2 cut(s) 369, 747
MaeII ACGT 1 cut(s) 618
MaeIII GTNAC 1 cut(s) 95
MalI GATC 4 cut(s) 217, 238, 712, 726
MboI GATC 4 cut(s) 215, 236, 710, 724
MboII GAAGA 3 cut(s) 214, 565, 655
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 5 cut(s) 273, 530, 562, 579, 861
MlyI GAGTC 2 cut(s) 565, 744
MmeI TCCRAC 2 cut(s) 111, 685
MnlI CCTC 9 cut(s) 22, 25, 84, 135, 203, 205, 487, 686, 701
MseI TTAA 4 cut(s) 305, 534, 771, 889
MslI CAYNNNNRTG 4 cut(s) 165, 488, 548, 627
MspA1I CMGCKG 3 cut(s) 122, 227, 413
Mva1269I GAATGC 2 cut(s) 259, 652
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 69, 230
NdeII GATC 4 cut(s) 215, 236, 710, 724
NlaIII CATG 3 cut(s) 189, 553, 721
NlaIV GGNNCC 2 cut(s) 72, 406
NmuCI GTSAC 1 cut(s) 95
NspI RCATGY 1 cut(s) 189
PciI ACATGT 1 cut(s) 185
PctI GAATGC 2 cut(s) 259, 652
PfeI GAWTC 2 cut(s) 284, 853
Pfl23II CGTACG 1 cut(s) 615
PkrI GCNGC 5 cut(s) 65, 226, 409, 412, 652
PleI GAGTC 2 cut(s) 564, 744
PpsI GAGTC 2 cut(s) 564, 744
PscI ACATGT 1 cut(s) 185
PshAI GACNNNNGTC 2 cut(s) 93, 802
PspLI CGTACG 1 cut(s) 615
PspN4I GGNNCC 2 cut(s) 72, 406
PspOMI GGGCCC 1 cut(s) 70
PspPI GGNCC 3 cut(s) 70, 71, 136
PsrI GAACNNNNNNTAC 2 cut(s) 292, 324
PstI CTGCAG 1 cut(s) 226
PvuII CAGCTG 2 cut(s) 227, 413
RsaI GTAC 5 cut(s) 242, 310, 362, 617, 788
RsaNI GTAC 5 cut(s) 241, 309, 361, 616, 787
RseI CAYNNNNRTG 4 cut(s) 165, 488, 548, 627
SaqAI TTAA 4 cut(s) 305, 534, 771, 889
SatI GCNGC 5 cut(s) 64, 225, 408, 411, 651
Sau3AI GATC 4 cut(s) 215, 236, 710, 724
Sau96I GGNCC 3 cut(s) 70, 71, 136
SchI GAGTC 2 cut(s) 565, 744
SduI GDGCHC 1 cut(s) 74
SfaNI GCATC 3 cut(s) 164, 559, 620
SfcI CTRYAG 1 cut(s) 222
SmiMI CAYNNNNRTG 4 cut(s) 165, 488, 548, 627
Sse9I AATT 5 cut(s) 273, 530, 562, 579, 861
SsiI CCGC 5 cut(s) 122, 171, 198, 408, 784
SspMI CTAG 2 cut(s) 369, 747
StyI CCWWGG 2 cut(s) 132, 837
TaaI ACNGT 5 cut(s) 463, 703, 736, 778, 791
TaiI ACGT 1 cut(s) 621
TaqI TCGA 1 cut(s) 753
TasI AATT 5 cut(s) 273, 530, 562, 579, 861
TatI WGTACW 1 cut(s) 360
TauI GCSGC 1 cut(s) 410
TfiI GAWTC 2 cut(s) 284, 853
Tru1I TTAA 4 cut(s) 305, 534, 771, 889
Tru9I TTAA 4 cut(s) 305, 534, 771, 889
TscAI CASTG 2 cut(s) 660, 741
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 4 cut(s) 63, 224, 410, 650
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 3 cut(s) 333, 566, 611
TspGWI ACGGA 1 cut(s) 296
TspRI CASTG 2 cut(s) 660, 741
XapI RAATTY 1 cut(s) 530
XceI RCATGY 1 cut(s) 189
XspI CTAG 2 cut(s) 369, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.