Rh6CG055600

Mitochondrial outer membrane protein porin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0014819
Physical Location & Seq
Forward (+)
5646946 .. 5648651
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG055600.1

Sequence Viewer

Length: 390 bp
ATGGGCAAGTCTAATCATAAAAAACACAAGCACAATCACAAGCAACCTCTATTTTTCTCCGAGTTTGCTCAGAAATCTACAGAGTTGCTTACAAAGGGCTACTCCAGAGGCCAGATATTTAGCTTCACAACCCACAAAAATGAACTGGACCTTACTTCAACCATTGCAAGTAATGGAAGACACACAACTGCAGGTGTAGTAGGAGCATACCCATATAAAAATGCAACCTTTAGAGTTGGAGTTGACAAGGATTCAAAAATTGCAGCGAACTTCACTATACGTGAGAAGTTTCTTTCCGGTACAAAGACTACAGCTTCATTGAGCTTCCCTGATTACAAATCTAGCAAGTCCTCACGGCATCTCCGCAGCATTCTCGCGACATCCCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166
Pfam Domains
Protein Families
Porin_3

Protein Analysis

129

Amino Acids

14.37

Weight (kDa)

10.22

Isoelectric Point (pI)

34.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Porin_3 PF01459 16 - 117 4.3e-07 Eukaryotic porin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014819)

Species Orthologous Gene IDs
malus_domestica MD05G1100000.v1.1 MD05G1100300.v1.1
prunus_persica Prupe.8G144700_v2.0.a1
pyrus_communis pycom05g09890
rosa_chinensis RchiOBHm_Chr6g0253791
rosa_laevigata RLG00000014970
rosa_multiflora Rmu_sc0006323.1_g000019
rosa_roxburghii Rroxscaffold_7G00211520
rosa_rugosa Rorug05G0547200 Rorug05G0547200
rosa_samantha Rh6AG062800 Rh6BG056100 Rh6CG055600 Rh6CG056200 Rh6DG053200 Rh6DG054000
rosa_wichuraiana Rw6G005590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 182
Acc36I ACCTGC 1 cut(s) 182
AccII CGCG 1 cut(s) 377
AciI CCGC 1 cut(s) 364
AfaI GTAC 1 cut(s) 301
AgsI TTSAA 2 cut(s) 159, 255
AluBI AGCT 3 cut(s) 123, 314, 324
AluI AGCT 3 cut(s) 123, 314, 324
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 2 cut(s) 263, 366
AspS9I GGNCC 1 cut(s) 148
AvaII GGWCC 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 184
BbvI GCAGC 2 cut(s) 275, 378
BceAI ACGGC 1 cut(s) 371
BcgI CGANNNNNNTGC 2 cut(s) 355, 389
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 4 cut(s) 78, 189, 309, 386
BfuAI ACCTGC 1 cut(s) 182
BisI GCNGC 2 cut(s) 264, 367
BlsI GCNGC 2 cut(s) 265, 368
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 148
BmsI GCATC 1 cut(s) 367
BpiI GAAGAC 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 88
BsaAI YACGTR 1 cut(s) 281
BsaWI WCCGGW 1 cut(s) 296
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bse1I ACTGG 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 162
BseGI GGATG 1 cut(s) 380
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 1 cut(s) 150
BseXI GCAGC 2 cut(s) 275, 378
Bsh1236I CGCG 1 cut(s) 377
BshFI GGCC 1 cut(s) 111
BsiSI CCGG 1 cut(s) 297
BsmI GAATGC 1 cut(s) 369
BsnI GGCC 1 cut(s) 111
Bsp68I TCGCGA 1 cut(s) 377
BspACI CCGC 1 cut(s) 364
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 82
BspFNI CGCG 1 cut(s) 377
BspMAI CTGCAG 1 cut(s) 193
BspMI ACCTGC 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 162
BsrI ACTGG 1 cut(s) 150
BstBAI YACGTR 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 380
BstFNI CGCG 1 cut(s) 377
BstSFI CTRYAG 4 cut(s) 78, 189, 309, 386
BstUI CGCG 1 cut(s) 377
BstV1I GCAGC 2 cut(s) 275, 378
BstV2I GAAGAC 1 cut(s) 184
BsuRI GGCC 1 cut(s) 111
BtsCI GGATG 1 cut(s) 380
BtuMI TCGCGA 1 cut(s) 377
BveI ACCTGC 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 300
CviJI RGCY 5 cut(s) 99, 111, 123, 314, 324
CviKI_1 RGCY 5 cut(s) 99, 111, 123, 314, 324
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 148
FaiI YATR 5 cut(s) 18, 208, 214, 216, 278
Fnu4HI GCNGC 2 cut(s) 264, 367
FokI GGATG 1 cut(s) 367
Fsp4HI GCNGC 2 cut(s) 264, 367
FspBI CTAG 1 cut(s) 342
GluI GCNGC 2 cut(s) 264, 367
GsuI CTGGAG 1 cut(s) 88
HaeIII GGCC 1 cut(s) 111
HapII CCGG 1 cut(s) 297
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 1 cut(s) 251
HpaII CCGG 1 cut(s) 297
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 2 cut(s) 61, 72
Hpy188III TCNNGA 2 cut(s) 105, 376
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 4 cut(s) 167, 191, 224, 263
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 1 cut(s) 280
LmnI GCTCC 1 cut(s) 203
LpnPI CCDG 6 cut(s) 118, 125, 131, 177, 310, 342
Lsp1109I GCAGC 2 cut(s) 275, 378
LweI GCATC 1 cut(s) 367
MaeI CTAG 1 cut(s) 342
MaeII ACGT 1 cut(s) 280
MboII GAAGA 1 cut(s) 189
MluCI AATT 1 cut(s) 258
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 3 cut(s) 57, 101, 361
MslI CAYNNNNRTG 1 cut(s) 138
MspI CCGG 1 cut(s) 297
Mva1269I GAATGC 1 cut(s) 369
MvnI CGCG 1 cut(s) 377
NruI TCGCGA 1 cut(s) 377
PaqCI CACCTGC 1 cut(s) 182
PctI GAATGC 1 cut(s) 369
PfeI GAWTC 1 cut(s) 251
PkrI GCNGC 2 cut(s) 265, 368
Ppu21I YACGTR 1 cut(s) 281
PspPI GGNCC 1 cut(s) 148
PstI CTGCAG 1 cut(s) 193
RruI TCGCGA 1 cut(s) 377
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
RseI CAYNNNNRTG 1 cut(s) 138
SatI GCNGC 2 cut(s) 264, 367
Sau96I GGNCC 1 cut(s) 148
SetI ASST 8 cut(s) 49, 125, 153, 196, 230, 283, 316, 326
SfaNI GCATC 1 cut(s) 367
SfcI CTRYAG 4 cut(s) 78, 189, 309, 386
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 138
Sse9I AATT 1 cut(s) 258
SsiI CCGC 1 cut(s) 364
SspMI CTAG 1 cut(s) 342
TaiI ACGT 1 cut(s) 283
TasI AATT 1 cut(s) 258
TfiI GAWTC 1 cut(s) 251
TseI GCWGC 2 cut(s) 263, 366
TspDTI ATGAA 2 cut(s) 156, 306
VpaK11BI GGWCC 1 cut(s) 148
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.