Rh6AG062800

Mitochondrial outer membrane protein porin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0014819
Physical Location & Seq
Forward (+)
9341063 .. 9342821
1759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG062800.1

Sequence Viewer

Length: 864 bp
ATGGGCAAGTCTAATCATAAAAAACACAAGCACAATCACAAGCAACCTCTATTTTTCTCCGAGTTTGCTCAGAAATCTACAGAGTTGCTTACAAAGGGTTACTACAGAGGCCAGATATTTAGCTTCACAACCCACAAAGATGAACTGGACCTTAATTCAACCATTGCAAGTAATGGAAGACACACAACTGCAGGTGTGGTAGGAGCATACCCATATAAAAATGCAACATTTAGAGTTGGAGTTGACAAGGATTCAAAAATTGCAGCAAACTTTACTGTAAGTGAGAAGTTTCTTTCAGGCACAAAGACTACAGCTTCATTGAGCTTCCCTGATTACAAATCTAGCAAGCTCAAATTTCAATGTCTCCGAGAATATGCTGCTCTAGCCATGTCTGTTTCTCTGAACCAGTATCCTGCAATCAAATTTTCAGCTGCTGTTGGTTCTTCAAGTGTTGCCCTTGGCATGGAGGCAGAGTTCATGACTACTTCTAGATGTTTCTCCAAGTGCAGCGCAGGCATTAACATGAAGGGTCTCAATTGCAATGCTTCAATAATTCTGGAAAACAAAGGTGACTTGCTAAATGCATCATATGTTCATTATCTTGATCCAGAGAAGAGGAATGCAGCAGTGGTACAGTTCACTCAAGAACTCTCAACAAAGAGAAGCACCTTAACCGTTGGAGGATCATGTGCTGTTGATAGTCATACAGCAGTGAAGGCTAGACTCGATGATAGAGGGAGGTTAAGAACTAACCTAAGGTACAATTTCAGACCCAAGTCATGCTTGTCTATCTCTGGAGAGTTCAACACCAAGGCAGTTGACAGGAGTCCTAAAATTGGTCTGGAACTTGCTATTGATCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166
Pfam Domains
Protein Families
Porin_3

Protein Analysis

287

Amino Acids

31.57

Weight (kDa)

9.59

Isoelectric Point (pI)

32.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Porin_3 PF01459 16 - 280 5.7e-39 Eukaryotic porin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014819)

Species Orthologous Gene IDs
malus_domestica MD05G1100000.v1.1 MD05G1100300.v1.1
prunus_persica Prupe.8G144700_v2.0.a1
pyrus_communis pycom05g09890
rosa_chinensis RchiOBHm_Chr6g0253791
rosa_laevigata RLG00000014970
rosa_multiflora Rmu_sc0006323.1_g000019
rosa_roxburghii Rroxscaffold_7G00211520
rosa_rugosa Rorug05G0547200 Rorug05G0547200
rosa_samantha Rh6AG062800 Rh6BG056100 Rh6CG055600 Rh6CG056200 Rh6DG053200 Rh6DG054000
rosa_wichuraiana Rw6G005590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 182
Acc36I ACCTGC 1 cut(s) 182
AclWI GGATC 2 cut(s) 599, 691
AcsI RAATTY 2 cut(s) 353, 422
AfaI GTAC 2 cut(s) 633, 761
AfiI CCNNNNNNNGG 2 cut(s) 463, 836
AgsI TTSAA 6 cut(s) 159, 255, 359, 447, 549, 805
AloI GAACNNNNNNTCC 2 cut(s) 458, 490
AluBI AGCT 5 cut(s) 123, 314, 324, 349, 431
AluI AGCT 5 cut(s) 123, 314, 324, 349, 431
Alw26I GTCTC 2 cut(s) 368, 536
AlwI GGATC 2 cut(s) 599, 691
AlwNI CAGNNNCTG 1 cut(s) 434
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 5 cut(s) 263, 377, 431, 507, 623
ApoI RAATTY 2 cut(s) 353, 422
AspLEI GCGC 1 cut(s) 512
AspS9I GGNCC 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 581
AvaII GGWCC 1 cut(s) 148
AxyI CCTNAGG 1 cut(s) 755
BbsI GAAGAC 1 cut(s) 184
BbvI GCAGC 5 cut(s) 275, 364, 418, 519, 635
BciVI GTATCC 1 cut(s) 420
BcoDI GTCTC 2 cut(s) 368, 536
BfaI CTAG 4 cut(s) 342, 383, 489, 720
BfmI CTRYAG 4 cut(s) 78, 103, 189, 309
BfuAI ACCTGC 1 cut(s) 182
BfuI GTATCC 1 cut(s) 420
BisI GCNGC 5 cut(s) 264, 378, 432, 508, 624
BlsI GCNGC 5 cut(s) 265, 379, 433, 509, 625
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 148
BmsI GCATC 1 cut(s) 593
BoxI GACNNNNGTC 2 cut(s) 775, 825
BpiI GAAGAC 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 816
BpuEI CTTGAG 1 cut(s) 627
BsaI GGTCTC 1 cut(s) 536
BsaJI CCNNGG 2 cut(s) 457, 810
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 2 cut(s) 463, 836
Bse1I ACTGG 2 cut(s) 150, 406
Bse21I CCTNAGG 1 cut(s) 755
Bse3DI GCAATG 2 cut(s) 162, 547
BseDI CCNNGG 2 cut(s) 457, 810
BseLI CCNNNNNNNGG 2 cut(s) 463, 836
BseMI GCAATG 2 cut(s) 162, 547
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 2 cut(s) 150, 406
BseXI GCAGC 5 cut(s) 275, 364, 418, 519, 635
BsgI GTGCAG 1 cut(s) 526
BshFI GGCC 1 cut(s) 111
BslI CCNNNNNNNGG 2 cut(s) 463, 836
BsmAI GTCTC 2 cut(s) 368, 536
BsmI GAATGC 1 cut(s) 625
BsnI GGCC 1 cut(s) 111
Bso31I GGTCTC 1 cut(s) 536
Bsp143I GATC 3 cut(s) 604, 683, 856
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 82
BspHI TCATGA 1 cut(s) 477
BspMAI CTGCAG 1 cut(s) 193
BspMI ACCTGC 1 cut(s) 182
BspPI GGATC 2 cut(s) 599, 691
BspTNI GGTCTC 1 cut(s) 536
BsrDI GCAATG 2 cut(s) 162, 547
BsrI ACTGG 2 cut(s) 150, 406
BssECI CCNNGG 2 cut(s) 457, 810
BssMI GATC 3 cut(s) 604, 683, 856
BssT1I CCWWGG 2 cut(s) 457, 810
Bst4CI ACNGT 3 cut(s) 277, 636, 676
Bst6I CTCTTC 1 cut(s) 608
BstC8I GCNNGC 2 cut(s) 347, 514
BstDEI CTNAG 2 cut(s) 69, 755
BstHHI GCGC 1 cut(s) 512
BstKTI GATC 3 cut(s) 607, 686, 859
BstMAI GTCTC 2 cut(s) 368, 536
BstMBI GATC 3 cut(s) 604, 683, 856
BstMWI GCNNNNNNNGC 3 cut(s) 383, 513, 716
BstPAI GACNNNNGTC 2 cut(s) 775, 825
BstSFI CTRYAG 4 cut(s) 78, 103, 189, 309
BstV1I GCAGC 5 cut(s) 275, 364, 418, 519, 635
BstV2I GAAGAC 1 cut(s) 184
Bsu36I CCTNAGG 1 cut(s) 755
BsuI GTATCC 1 cut(s) 420
BsuRI GGCC 1 cut(s) 111
BtsI GCAGTG 2 cut(s) 633, 717
BtsIMutI CAGTG 2 cut(s) 633, 717
BveI ACCTGC 1 cut(s) 182
Cac8I GCNNGC 2 cut(s) 347, 514
CaiI CAGNNNCTG 1 cut(s) 434
CciI TCATGA 1 cut(s) 477
CfoI GCGC 1 cut(s) 512
Cfr13I GGNCC 1 cut(s) 148
Csp6I GTAC 2 cut(s) 632, 760
CviAII CATG 6 cut(s) 388, 463, 478, 523, 687, 780
CviJI RGCY 8 cut(s) 111, 123, 314, 324, 349, 386, 431, 719
CviKI_1 RGCY 8 cut(s) 111, 123, 314, 324, 349, 386, 431, 719
CviQI GTAC 2 cut(s) 632, 760
DdeI CTNAG 2 cut(s) 69, 755
DpnI GATC 3 cut(s) 606, 685, 858
DpnII GATC 3 cut(s) 604, 683, 856
Eam1104I CTCTTC 1 cut(s) 608
EarI CTCTTC 1 cut(s) 608
Eco130I CCWWGG 2 cut(s) 457, 810
Eco31I GGTCTC 1 cut(s) 536
Eco47I GGWCC 1 cut(s) 148
Eco81I CCTNAGG 1 cut(s) 755
EcoT14I CCWWGG 2 cut(s) 457, 810
EcoT22I ATGCAT 1 cut(s) 586
ErhI CCWWGG 2 cut(s) 457, 810
FaeI CATG 6 cut(s) 391, 466, 481, 526, 690, 783
FalI AAGNNNNNCTT 2 cut(s) 767, 799
FatI CATG 6 cut(s) 387, 462, 477, 522, 686, 779
FauNDI CATATG 1 cut(s) 589
Fnu4HI GCNGC 5 cut(s) 264, 378, 432, 508, 624
Fsp4HI GCNGC 5 cut(s) 264, 378, 432, 508, 624
FspBI CTAG 4 cut(s) 342, 383, 489, 720
GlaI GCGC 1 cut(s) 511
GluI GCNGC 5 cut(s) 264, 378, 432, 508, 624
GsuI CTGGAG 1 cut(s) 816
HaeIII GGCC 1 cut(s) 111
HhaI GCGC 1 cut(s) 512
Hin1II CATG 6 cut(s) 391, 466, 481, 526, 690, 783
Hin6I GCGC 1 cut(s) 510
HinP1I GCGC 1 cut(s) 510
HincII GTYRAC 2 cut(s) 244, 820
HindII GTYRAC 2 cut(s) 244, 820
HinfI GANTC 3 cut(s) 251, 723, 826
HphI GGTGA 1 cut(s) 581
Hpy166II GTNNAC 3 cut(s) 244, 639, 820
Hpy188I TCNGA 6 cut(s) 61, 72, 368, 402, 770, 863
Hpy188III TCNNGA 8 cut(s) 478, 489, 557, 602, 608, 644, 795, 842
Hpy8I GTNNAC 3 cut(s) 244, 639, 820
HpyAV CCTTC 2 cut(s) 520, 709
HpyCH4III ACNGT 3 cut(s) 277, 636, 676
HpyCH4V TGCA 9 cut(s) 167, 191, 224, 263, 416, 507, 540, 584, 623
HpyF10VI GCNNNNNNNGC 3 cut(s) 383, 513, 716
HpyF3I CTNAG 2 cut(s) 69, 755
Hsp92II CATG 6 cut(s) 391, 466, 481, 526, 690, 783
HspAI GCGC 1 cut(s) 510
Kzo9I GATC 3 cut(s) 604, 683, 856
LmnI GCTCC 1 cut(s) 203
Lsp1109I GCAGC 5 cut(s) 275, 364, 418, 519, 635
LweI GCATC 1 cut(s) 593
MaeI CTAG 4 cut(s) 342, 383, 489, 720
MaeIII GTNAC 2 cut(s) 98, 569
MalI GATC 3 cut(s) 606, 685, 858
MboI GATC 3 cut(s) 604, 683, 856
MboII GAAGA 3 cut(s) 189, 435, 625
MfeI CAATTG 1 cut(s) 535
MluCI AATT 8 cut(s) 154, 258, 353, 422, 535, 552, 763, 834
MlyI GAGTC 2 cut(s) 717, 835
MmeI TCCRAC 2 cut(s) 217, 658
MnlI CCTC 7 cut(s) 57, 101, 460, 609, 674, 728, 732
Mph1103I ATGCAT 1 cut(s) 586
MseI TTAA 4 cut(s) 153, 519, 671, 743
MslI CAYNNNNRTG 2 cut(s) 138, 521
MspA1I CMGCKG 1 cut(s) 431
MunI CAATTG 1 cut(s) 535
Mva1269I GAATGC 1 cut(s) 625
MwoI GCNNNNNNNGC 3 cut(s) 383, 513, 716
NdeI CATATG 1 cut(s) 589
NdeII GATC 3 cut(s) 604, 683, 856
NlaIII CATG 6 cut(s) 391, 466, 481, 526, 690, 783
NmuCI GTSAC 1 cut(s) 569
NsiI ATGCAT 1 cut(s) 586
PagI TCATGA 1 cut(s) 477
PaqCI CACCTGC 1 cut(s) 182
PctI GAATGC 1 cut(s) 625
PfeI GAWTC 1 cut(s) 251
PkrI GCNGC 5 cut(s) 265, 379, 433, 509, 625
PleI GAGTC 2 cut(s) 717, 834
PpsI GAGTC 2 cut(s) 717, 834
PshAI GACNNNNGTC 2 cut(s) 775, 825
PspPI GGNCC 1 cut(s) 148
PstI CTGCAG 1 cut(s) 193
PstNI CAGNNNCTG 1 cut(s) 434
PvuII CAGCTG 1 cut(s) 431
RsaI GTAC 2 cut(s) 633, 761
RsaNI GTAC 2 cut(s) 632, 760
RseI CAYNNNNRTG 2 cut(s) 138, 521
SaqAI TTAA 4 cut(s) 153, 519, 671, 743
SatI GCNGC 5 cut(s) 264, 378, 432, 508, 624
Sau3AI GATC 3 cut(s) 604, 683, 856
Sau96I GGNCC 1 cut(s) 148
SchI GAGTC 2 cut(s) 717, 835
SfaNI GCATC 1 cut(s) 593
SfcI CTRYAG 4 cut(s) 78, 103, 189, 309
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 2 cut(s) 138, 521
SmlI CTYRAG 1 cut(s) 642
SmoI CTYRAG 1 cut(s) 642
Sse9I AATT 8 cut(s) 154, 258, 353, 422, 535, 552, 763, 834
SspMI CTAG 4 cut(s) 342, 383, 489, 720
StyI CCWWGG 2 cut(s) 457, 810
TaaI ACNGT 3 cut(s) 277, 636, 676
TaqI TCGA 1 cut(s) 726
TasI AATT 8 cut(s) 154, 258, 353, 422, 535, 552, 763, 834
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 4 cut(s) 153, 519, 671, 743
Tru9I TTAA 4 cut(s) 153, 519, 671, 743
TscAI CASTG 2 cut(s) 633, 717
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 5 cut(s) 263, 377, 431, 507, 623
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 5 cut(s) 156, 306, 466, 539, 584
TspRI CASTG 2 cut(s) 633, 717
VpaK11BI GGWCC 1 cut(s) 148
XapI RAATTY 2 cut(s) 353, 422
XbaI TCTAGA 1 cut(s) 488
XspI CTAG 4 cut(s) 342, 383, 489, 720
Zsp2I ATGCAT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.