RchiOBHm_Chr6g0253791

Mitochondrial outer membrane protein porin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0014819
Physical Location & Seq
Forward (+)
8910164 .. 8912542
2379 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22760

Sequence Viewer

Length: 804 bp
ATGGGCAAGTCTAATCATAAAAAACACAAGCACAATCACAAGCAACCTCTATTTTTCTCCGAGTTTGCTCACAAATCTACAGAGTTGCTTACAAAGGGTTACTACAGAGGCCAGATATTTAGCTTCACAACCCACAAAGATCTACTGGACCTTACTTCAACCATTGCAAGTAATGGAAGACACACAACTGCAGGTGTGGTAGGAGCATACCCATATAAAAATGCAACCTTTAGAGTTGGAGTTGACAAGGATTTAAAAATTGCAGCAAACTTCACTGTAAGTGAGAAGTTTCTTTCAGGCACAAAGACTACAGCTTCATTGAGCTTCCCTGATTACAAATCTAGCAAGCTCAAATTTCAATGTCTCCGAGAATATGCTGCTCTAGCCATGTCTGTTTCTCTGAACCAGTATCCTGCAATCAAATTTTCAGCTGCTGTTGGTTCTTCAAGTGTTGCCCTTGGCATGGAGGCAGAGTTCATGACTACTTCTAGATGTTTCTCCAAGTGCAGCGCAGGCATTAACATGAAGGGTCTCAATTGCAATGCTTCAATAATTCTGAATGCAGCAGTGGTACAGTTCACTCAAGAACTCTCAACAAAGAGAAGCACCTTAACCGTTGGAGGATCATGTGCTGTTGATAGTCATACAGCAGTGAAGGCTAGACTCGATGATCGAGGGAGGTTAAGAACTAACCTAAGGTACAATTTCAGACCCAAGTCATGCTTGTCTATCTCTGGAGAGTTCAACACCAAGGCAGTTGACAGGAGTCCTAAAATTGGTCTGGAACTTGCTATTGATCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166
Pfam Domains
Protein Families
Porin_3

Protein Analysis

267

Amino Acids

29.24

Weight (kDa)

9.77

Isoelectric Point (pI)

28.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Porin_3 PF01459 16 - 260 1.5e-25 Eukaryotic porin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014819)

Species Orthologous Gene IDs
malus_domestica MD05G1100000.v1.1 MD05G1100300.v1.1
prunus_persica Prupe.8G144700_v2.0.a1
pyrus_communis pycom05g09890
rosa_chinensis RchiOBHm_Chr6g0253791
rosa_laevigata RLG00000014970
rosa_multiflora Rmu_sc0006323.1_g000019
rosa_roxburghii Rroxscaffold_7G00211520
rosa_rugosa Rorug05G0547200 Rorug05G0547200
rosa_samantha Rh6AG062800 Rh6BG056100 Rh6CG055600 Rh6CG056200 Rh6DG053200 Rh6DG054000
rosa_wichuraiana Rw6G005590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 182
Acc36I ACCTGC 1 cut(s) 182
AclWI GGATC 1 cut(s) 631
AcsI RAATTY 2 cut(s) 353, 422
AfaI GTAC 2 cut(s) 573, 701
AfiI CCNNNNNNNGG 2 cut(s) 463, 776
AgsI TTSAA 5 cut(s) 159, 359, 447, 549, 745
AloI GAACNNNNNNTCC 2 cut(s) 458, 490
AluBI AGCT 5 cut(s) 123, 314, 324, 349, 431
AluI AGCT 5 cut(s) 123, 314, 324, 349, 431
Alw26I GTCTC 2 cut(s) 368, 536
AlwI GGATC 1 cut(s) 631
AlwNI CAGNNNCTG 1 cut(s) 434
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 5 cut(s) 263, 377, 431, 507, 563
ApoI RAATTY 2 cut(s) 353, 422
AspLEI GCGC 1 cut(s) 512
AspS9I GGNCC 1 cut(s) 148
AvaII GGWCC 1 cut(s) 148
AxyI CCTNAGG 1 cut(s) 695
BbsI GAAGAC 1 cut(s) 184
BbvI GCAGC 5 cut(s) 275, 364, 418, 519, 575
BciVI GTATCC 1 cut(s) 420
BcoDI GTCTC 2 cut(s) 368, 536
BfaI CTAG 4 cut(s) 342, 383, 489, 660
BfmI CTRYAG 4 cut(s) 78, 103, 189, 309
BfuAI ACCTGC 1 cut(s) 182
BfuI GTATCC 1 cut(s) 420
BglII AGATCT 1 cut(s) 139
BisI GCNGC 5 cut(s) 264, 378, 432, 508, 564
BlsI GCNGC 5 cut(s) 265, 379, 433, 509, 565
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 148
BoxI GACNNNNGTC 2 cut(s) 715, 765
BpiI GAAGAC 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 756
BpuEI CTTGAG 1 cut(s) 567
BsaI GGTCTC 1 cut(s) 536
BsaJI CCNNGG 2 cut(s) 457, 750
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 2 cut(s) 463, 776
Bse1I ACTGG 2 cut(s) 150, 406
Bse21I CCTNAGG 1 cut(s) 695
Bse3DI GCAATG 2 cut(s) 162, 547
BseDI CCNNGG 2 cut(s) 457, 750
BseLI CCNNNNNNNGG 2 cut(s) 463, 776
BseMI GCAATG 2 cut(s) 162, 547
BseNI ACTGG 2 cut(s) 150, 406
BseXI GCAGC 5 cut(s) 275, 364, 418, 519, 575
BsgI GTGCAG 1 cut(s) 526
BshFI GGCC 1 cut(s) 111
BslI CCNNNNNNNGG 2 cut(s) 463, 776
BsmAI GTCTC 2 cut(s) 368, 536
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 1 cut(s) 111
Bso31I GGTCTC 1 cut(s) 536
Bsp143I GATC 4 cut(s) 139, 623, 670, 796
BspANI GGCC 1 cut(s) 111
BspHI TCATGA 1 cut(s) 477
BspMAI CTGCAG 1 cut(s) 193
BspMI ACCTGC 1 cut(s) 182
BspPI GGATC 1 cut(s) 631
BspTNI GGTCTC 1 cut(s) 536
BsrDI GCAATG 2 cut(s) 162, 547
BsrI ACTGG 2 cut(s) 150, 406
BssECI CCNNGG 2 cut(s) 457, 750
BssMI GATC 4 cut(s) 139, 623, 670, 796
BssT1I CCWWGG 2 cut(s) 457, 750
Bst4CI ACNGT 3 cut(s) 277, 576, 616
BstC8I GCNNGC 2 cut(s) 347, 514
BstDEI CTNAG 1 cut(s) 695
BstHHI GCGC 1 cut(s) 512
BstKTI GATC 4 cut(s) 142, 626, 673, 799
BstMAI GTCTC 2 cut(s) 368, 536
BstMBI GATC 4 cut(s) 139, 623, 670, 796
BstMWI GCNNNNNNNGC 3 cut(s) 383, 513, 656
BstPAI GACNNNNGTC 2 cut(s) 715, 765
BstSFI CTRYAG 4 cut(s) 78, 103, 189, 309
BstV1I GCAGC 5 cut(s) 275, 364, 418, 519, 575
BstV2I GAAGAC 1 cut(s) 184
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
Bsu36I CCTNAGG 1 cut(s) 695
BsuI GTATCC 1 cut(s) 420
BsuRI GGCC 1 cut(s) 111
BtsI GCAGTG 2 cut(s) 573, 657
BtsIMutI CAGTG 3 cut(s) 273, 573, 657
BveI ACCTGC 1 cut(s) 182
Cac8I GCNNGC 2 cut(s) 347, 514
CaiI CAGNNNCTG 1 cut(s) 434
CciI TCATGA 1 cut(s) 477
CfoI GCGC 1 cut(s) 512
Cfr13I GGNCC 1 cut(s) 148
Csp6I GTAC 2 cut(s) 572, 700
CviAII CATG 6 cut(s) 388, 463, 478, 523, 627, 720
CviJI RGCY 8 cut(s) 111, 123, 314, 324, 349, 386, 431, 659
CviKI_1 RGCY 8 cut(s) 111, 123, 314, 324, 349, 386, 431, 659
CviQI GTAC 2 cut(s) 572, 700
DdeI CTNAG 1 cut(s) 695
DpnI GATC 4 cut(s) 141, 625, 672, 798
DpnII GATC 4 cut(s) 139, 623, 670, 796
DraI TTTAAA 1 cut(s) 255
Eco130I CCWWGG 2 cut(s) 457, 750
Eco31I GGTCTC 1 cut(s) 536
Eco47I GGWCC 1 cut(s) 148
Eco81I CCTNAGG 1 cut(s) 695
EcoT14I CCWWGG 2 cut(s) 457, 750
ErhI CCWWGG 2 cut(s) 457, 750
FaeI CATG 6 cut(s) 391, 466, 481, 526, 630, 723
FalI AAGNNNNNCTT 2 cut(s) 707, 739
FatI CATG 6 cut(s) 387, 462, 477, 522, 626, 719
Fnu4HI GCNGC 5 cut(s) 264, 378, 432, 508, 564
Fsp4HI GCNGC 5 cut(s) 264, 378, 432, 508, 564
FspBI CTAG 4 cut(s) 342, 383, 489, 660
GlaI GCGC 1 cut(s) 511
GluI GCNGC 5 cut(s) 264, 378, 432, 508, 564
GsuI CTGGAG 1 cut(s) 756
HaeIII GGCC 1 cut(s) 111
HhaI GCGC 1 cut(s) 512
Hin1II CATG 6 cut(s) 391, 466, 481, 526, 630, 723
Hin6I GCGC 1 cut(s) 510
HinP1I GCGC 1 cut(s) 510
HincII GTYRAC 2 cut(s) 244, 760
HindII GTYRAC 2 cut(s) 244, 760
HinfI GANTC 2 cut(s) 663, 766
Hpy166II GTNNAC 3 cut(s) 244, 579, 760
Hpy188I TCNGA 6 cut(s) 61, 368, 402, 558, 710, 803
Hpy188III TCNNGA 5 cut(s) 478, 489, 584, 735, 782
Hpy8I GTNNAC 3 cut(s) 244, 579, 760
HpyAV CCTTC 2 cut(s) 520, 649
HpyCH4III ACNGT 3 cut(s) 277, 576, 616
HpyCH4V TGCA 8 cut(s) 167, 191, 224, 263, 416, 507, 540, 563
HpyF10VI GCNNNNNNNGC 3 cut(s) 383, 513, 656
HpyF3I CTNAG 1 cut(s) 695
Hsp92II CATG 6 cut(s) 391, 466, 481, 526, 630, 723
HspAI GCGC 1 cut(s) 510
Kzo9I GATC 4 cut(s) 139, 623, 670, 796
LmnI GCTCC 1 cut(s) 203
Lsp1109I GCAGC 5 cut(s) 275, 364, 418, 519, 575
MaeI CTAG 4 cut(s) 342, 383, 489, 660
MaeIII GTNAC 1 cut(s) 98
MalI GATC 4 cut(s) 141, 625, 672, 798
MboI GATC 4 cut(s) 139, 623, 670, 796
MboII GAAGA 2 cut(s) 189, 435
MfeI CAATTG 1 cut(s) 535
MflI RGATCY 1 cut(s) 139
MluCI AATT 7 cut(s) 258, 353, 422, 535, 552, 703, 774
MlyI GAGTC 2 cut(s) 657, 775
MmeI TCCRAC 2 cut(s) 217, 598
MnlI CCTC 6 cut(s) 57, 101, 460, 614, 668, 672
MseI TTAA 4 cut(s) 254, 519, 611, 683
MslI CAYNNNNRTG 1 cut(s) 521
MspA1I CMGCKG 1 cut(s) 431
MunI CAATTG 1 cut(s) 535
Mva1269I GAATGC 1 cut(s) 565
MwoI GCNNNNNNNGC 3 cut(s) 383, 513, 656
NdeII GATC 4 cut(s) 139, 623, 670, 796
NlaIII CATG 6 cut(s) 391, 466, 481, 526, 630, 723
PagI TCATGA 1 cut(s) 477
PaqCI CACCTGC 1 cut(s) 182
PctI GAATGC 1 cut(s) 565
PkrI GCNGC 5 cut(s) 265, 379, 433, 509, 565
PleI GAGTC 2 cut(s) 657, 774
PpsI GAGTC 2 cut(s) 657, 774
PshAI GACNNNNGTC 2 cut(s) 715, 765
PspPI GGNCC 1 cut(s) 148
PstI CTGCAG 1 cut(s) 193
PstNI CAGNNNCTG 1 cut(s) 434
PsuI RGATCY 1 cut(s) 139
PvuII CAGCTG 1 cut(s) 431
RsaI GTAC 2 cut(s) 573, 701
RsaNI GTAC 2 cut(s) 572, 700
RseI CAYNNNNRTG 1 cut(s) 521
SaqAI TTAA 4 cut(s) 254, 519, 611, 683
SatI GCNGC 5 cut(s) 264, 378, 432, 508, 564
Sau3AI GATC 4 cut(s) 139, 623, 670, 796
Sau96I GGNCC 1 cut(s) 148
SchI GAGTC 2 cut(s) 657, 775
SfcI CTRYAG 4 cut(s) 78, 103, 189, 309
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 521
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
Sse9I AATT 7 cut(s) 258, 353, 422, 535, 552, 703, 774
SspMI CTAG 4 cut(s) 342, 383, 489, 660
StyI CCWWGG 2 cut(s) 457, 750
TaaI ACNGT 3 cut(s) 277, 576, 616
TaqI TCGA 2 cut(s) 666, 673
TasI AATT 7 cut(s) 258, 353, 422, 535, 552, 703, 774
Tru1I TTAA 4 cut(s) 254, 519, 611, 683
Tru9I TTAA 4 cut(s) 254, 519, 611, 683
TscAI CASTG 3 cut(s) 280, 573, 657
TseI GCWGC 5 cut(s) 263, 377, 431, 507, 563
TspDTI ATGAA 3 cut(s) 306, 466, 539
TspRI CASTG 3 cut(s) 280, 573, 657
VpaK11BI GGWCC 1 cut(s) 148
XapI RAATTY 2 cut(s) 353, 422
XbaI TCTAGA 1 cut(s) 488
XspI CTAG 4 cut(s) 342, 383, 489, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.