Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004218

Physical Location & Seq

Genomic Coordinates Reverse (-)

21620035 .. 21622175

Gene Structure 2141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1103800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGGTTTTCAGGGATACATAATTGGCAATCCAGCTACAAATGTTAAAGGGGATGTTAACTCGAGAATCGAGTATGCTCATCGTATGGCGCTTATATCAGATAGAATATACGAGTCAACTACAAGGAATTGCAGTGGCGAATACGTAGATGTAGATCCAAACAATCAACTATGCCTCAACAGTCTTCAAGCTTTCCAGGAGTGCACTGGAAGACTTGATTCCGAACACATATTGGCACCTTTCTGCCCCAAGGCAAACGACTATAACGAATTAACAGTGTTAGAAATGAACTGGAATTGGAAGGCGGGTATCTCACTCCCTGTTGAGGATACTTTGAAAGATTTCCCCTCTTCTCTGCAGTTGTGTCGGGAAGATAGGATCCGCTACGCTGTTCTTTGGGCGAATGATATAAACGTCCGTAAAGCTTTCAACATTCGAGAGTTACATGTATTTATCTACAGTGGTGATCATGATATGAGCATACCATATGTAAGCACACTGGCGTGGATAGAATCCTTGAACTTGACACTTGAAGATGATTGGAAACCATGGTTTTCTGATCATCAAGTTGCAGGGTTGGGAGGAGGGCATACAGCTCCAGAGTACAATCCTAAGGAGTGTTTTGATATGTTCAATAGGTGGCTAGGGCATTCTCCTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016740 GO:0016746 GO:0016747 GO:0019748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

221

Amino Acids

25.21

Weight (kDa)

4.91

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	3 - 146	2e-15	Serine carboxypeptidase
Peptidase_S10	PF00450	147 - 215	1.8e-13	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004218)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08900 FvH4_2g08900 FvH4_2g08900 FvH4_2g08900 FvH4_2g08900 FvH4_2g08900 FvH4_2g08900 FvH4_2g08900 FvH4_2g08900 FvH4_2g08900 FvH4_2g08900 FvH4_2g08900 FvH4_2g08900 FvH4_2g08900
malus_domestica	MD05G1103800.v1.1
prunus_persica	Prupe.8G148200_v2.0.a1 Prupe.8G148400_v2.0.a1 Prupe.8G148400_v2.0.a1 Prupe.8G148400_v2.0.a1 Prupe.8G148500_v2.0.a1 Prupe.8G148500_v2.0.a1 Prupe.8G148500_v2.0.a1
pyrus_communis	pycom05g10080
rosa_chinensis	RchiOBHm_Chr6g0264501
rosa_multiflora	Rmu_sc0006954.1_g000007
rosa_roxburghii	Rroxscaffold_176G00431840 Rroxscaffold_5G00349140
rosa_rugosa	Rorug06G0015900 Rorug06G0016000
rosa_samantha	Rh6AG132800 Rh6BG130200 Rh6CG128500
rosa_wichuraiana	Rw0G020840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	235
AciI	CCGC	2 cut(s)	305, 382
AclWI	GGATC	3 cut(s)	149, 373, 386
AfaI	GTAC	1 cut(s)	605
AfiI	CCNNNNNNNGG	1 cut(s)	325
AflIII	ACRYGT	1 cut(s)	445
AgsI	TTSAA	6 cut(s)	188, 337, 430, 520, 533, 634
AjnI	CCWGG	1 cut(s)	195
AleI	CACNNNNGTG	1 cut(s)	502
AluBI	AGCT	4 cut(s)	35, 191, 425, 596
AluI	AGCT	4 cut(s)	35, 191, 425, 596
Alw21I	GWGCWC	1 cut(s)	206
Alw44I	GTGCAC	1 cut(s)	202
AlwI	GGATC	3 cut(s)	149, 373, 386
Ama87I	CYCGRG	1 cut(s)	61
ApaLI	GTGCAC	1 cut(s)	202
Asp700I	GAANNNNTTC	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	476
AvaI	CYCGRG	1 cut(s)	61
AxyI	CCTNAGG	1 cut(s)	612
BaeGI	GKGCMC	1 cut(s)	206
BamHI	GGATCC	1 cut(s)	378
BanI	GGYRCC	1 cut(s)	235
BbsI	GAAGAC	2 cut(s)	176, 217
Bbv12I	GWGCWC	1 cut(s)	206
BcgI	CGANNNNNNTGC	2 cut(s)	347, 381
BciT130I	CCWGG	1 cut(s)	197
BciVI	GTATCC	2 cut(s)	8, 322
BclI	TGATCA	2 cut(s)	466, 559
BfaI	CTAG	1 cut(s)	644
BfmI	CTRYAG	2 cut(s)	356, 457
BfoI	RGCGCY	1 cut(s)	92
BfuI	GTATCC	2 cut(s)	8, 322
Bme1390I	CCNGG	1 cut(s)	197
BmeT110I	CYCGRG	1 cut(s)	61
BmiI	GGNNCC	2 cut(s)	237, 380
BmrFI	CCNGG	1 cut(s)	197
BpiI	GAAGAC	2 cut(s)	176, 217
BpmI	CTGGAG	1 cut(s)	582
BsaAI	YACGTR	1 cut(s)	145
BsaBI	GATNNNNATC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	249, 548
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse1I	ACTGG	3 cut(s)	211, 296, 504
Bse21I	CCTNAGG	1 cut(s)	612
Bse8I	GATNNNNATC	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	2 cut(s)	249, 548
BseGI	GGATG	1 cut(s)	58
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseNI	ACTGG	3 cut(s)	211, 296, 504
BseRI	GAGGAG	1 cut(s)	597
BseSI	GKGCMC	1 cut(s)	206
BshNI	GGYRCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	206
BsiHKCI	CYCGRG	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmI	GAATGC	1 cut(s)	649
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp143I	GATC	4 cut(s)	154, 378, 466, 559
Bsp19I	CCATGG	1 cut(s)	548
BspACI	CCGC	2 cut(s)	305, 382
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	2 cut(s)	237, 380
BspMAI	CTGCAG	1 cut(s)	360
BspPI	GGATC	3 cut(s)	149, 373, 386
BspT107I	GGYRCC	1 cut(s)	235
BsrI	ACTGG	3 cut(s)	211, 296, 504
BssECI	CCNNGG	2 cut(s)	249, 548
BssMI	GATC	4 cut(s)	154, 378, 466, 559
BssT1I	CCWWGG	2 cut(s)	249, 548
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	3 cut(s)	182, 277, 461
Bst6I	CTCTTC	1 cut(s)	355
BstBAI	YACGTR	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	612
BstDSI	CCRYGG	1 cut(s)	548
BstF5I	GGATG	1 cut(s)	58
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	4 cut(s)	157, 381, 469, 562
BstMBI	GATC	4 cut(s)	154, 378, 466, 559
BstNI	CCWGG	1 cut(s)	197
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	2 cut(s)	356, 457
BstSLI	GKGCMC	1 cut(s)	206
BstSNI	TACGTA	1 cut(s)	145
BstV2I	GAAGAC	2 cut(s)	176, 217
BstX2I	RGATCY	2 cut(s)	154, 378
BstYI	RGATCY	2 cut(s)	154, 378
Bsu36I	CCTNAGG	1 cut(s)	612
BsuI	GTATCC	2 cut(s)	8, 322
BtgI	CCRYGG	1 cut(s)	548
BtsCI	GGATG	1 cut(s)	58
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	5 cut(s)	139, 204, 282, 466, 497
CciI	TCATGA	1 cut(s)	469
CfoI	GCGC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	604
CviAII	CATG	3 cut(s)	446, 470, 549
CviJI	RGCY	5 cut(s)	35, 191, 425, 596, 643
CviKI_1	RGCY	5 cut(s)	35, 191, 425, 596, 643
CviQI	GTAC	1 cut(s)	604
DdeI	CTNAG	1 cut(s)	612
DpnI	GATC	4 cut(s)	156, 380, 468, 561
DpnII	GATC	4 cut(s)	154, 378, 466, 559
Eam1104I	CTCTTC	1 cut(s)	355
EarI	CTCTTC	1 cut(s)	355
Eco105I	TACGTA	1 cut(s)	145
Eco130I	CCWWGG	2 cut(s)	249, 548
Eco81I	CCTNAGG	1 cut(s)	612
Eco88I	CYCGRG	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	195
EcoT14I	CCWWGG	2 cut(s)	249, 548
ErhI	CCWWGG	2 cut(s)	249, 548
FaeI	CATG	3 cut(s)	449, 473, 552
FatI	CATG	3 cut(s)	445, 469, 548
FauI	CCCGC	1 cut(s)	298
FauNDI	CATATG	1 cut(s)	487
FbaI	TGATCA	2 cut(s)	466, 559
FokI	GGATG	1 cut(s)	65
FspBI	CTAG	1 cut(s)	644
GlaI	GCGC	1 cut(s)	90
GsuI	CTGGAG	1 cut(s)	582
HaeII	RGCGCY	1 cut(s)	92
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	3 cut(s)	449, 473, 552
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HincII	GTYRAC	2 cut(s)	58, 117
HindII	GTYRAC	2 cut(s)	58, 117
HindIII	AAGCTT	2 cut(s)	189, 423
HinfI	GANTC	4 cut(s)	66, 113, 218, 512
HpaI	GTTAAC	1 cut(s)	58
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	3 cut(s)	58, 117, 204
Hpy188I	TCNGA	3 cut(s)	100, 223, 559
Hpy188III	TCNNGA	5 cut(s)	63, 368, 437, 470, 599
Hpy8I	GTNNAC	3 cut(s)	58, 117, 204
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	3 cut(s)	182, 277, 461
HpyCH4IV	ACGT	2 cut(s)	144, 414
HpyCH4V	TGCA	4 cut(s)	132, 204, 358, 572
HpyF3I	CTNAG	1 cut(s)	612
HpySE526I	ACGT	2 cut(s)	144, 414
Hsp92II	CATG	3 cut(s)	449, 473, 552
HspAI	GCGC	1 cut(s)	89
Ksp22I	TGATCA	2 cut(s)	466, 559
KspAI	GTTAAC	1 cut(s)	58
Kzo9I	GATC	4 cut(s)	154, 378, 466, 559
LmnI	GCTCC	1 cut(s)	601
LpnPI	CCDG	9 cut(s)	45, 182, 192, 209, 277, 333, 485, 558, 612
MaeI	CTAG	1 cut(s)	644
MaeII	ACGT	2 cut(s)	144, 414
MaeIII	GTNAC	1 cut(s)	441
MalI	GATC	4 cut(s)	156, 380, 468, 561
MboI	GATC	4 cut(s)	154, 378, 466, 559
MboII	GAAGA	5 cut(s)	176, 222, 342, 383, 545
MflI	RGATCY	2 cut(s)	154, 378
MhlI	GDGCHC	1 cut(s)	206
MluCI	AATT	4 cut(s)	21, 127, 269, 295
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	5 cut(s)	185, 319, 358, 575, 578
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	4 cut(s)	45, 57, 272, 661
MslI	CAYNNNNRTG	1 cut(s)	502
MspR9I	CCNGG	1 cut(s)	197
Mva1269I	GAATGC	1 cut(s)	649
MvaI	CCWGG	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	548
NdeI	CATATG	1 cut(s)	487
NdeII	GATC	4 cut(s)	154, 378, 466, 559
NlaIII	CATG	3 cut(s)	449, 473, 552
NlaIV	GGNNCC	2 cut(s)	237, 380
NspI	RCATGY	1 cut(s)	449
OliI	CACNNNNGTG	1 cut(s)	502
PaeR7I	CTCGAG	1 cut(s)	61
PagI	TCATGA	1 cut(s)	469
PciI	ACATGT	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PctI	GAATGC	1 cut(s)	649
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	3 cut(s)	66, 218, 512
PfoI	TCCNGGA	1 cut(s)	195
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
Ppu21I	YACGTR	1 cut(s)	145
PscI	ACATGT	1 cut(s)	445
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	237, 380
PstI	CTGCAG	1 cut(s)	360
PsuI	RGATCY	2 cut(s)	154, 378
RsaI	GTAC	1 cut(s)	605
RsaNI	GTAC	1 cut(s)	604
RseI	CAYNNNNRTG	1 cut(s)	502
SaqAI	TTAA	4 cut(s)	45, 57, 272, 661
Sau3AI	GATC	4 cut(s)	154, 378, 466, 559
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	206
SetI	ASST	8 cut(s)	37, 147, 193, 241, 417, 427, 598, 641
SfcI	CTRYAG	2 cut(s)	356, 457
Sfr274I	CTCGAG	1 cut(s)	61
SlaI	CTCGAG	1 cut(s)	61
SmiMI	CAYNNNNRTG	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
SnaBI	TACGTA	1 cut(s)	145
Sse9I	AATT	4 cut(s)	21, 127, 269, 295
SsiI	CCGC	2 cut(s)	305, 382
SspMI	CTAG	1 cut(s)	644
StyD4I	CCNGG	1 cut(s)	195
StyI	CCWWGG	2 cut(s)	249, 548
TaaI	ACNGT	3 cut(s)	182, 277, 461
TaiI	ACGT	2 cut(s)	147, 417
TaqI	TCGA	3 cut(s)	62, 69, 436
TasI	AATT	4 cut(s)	21, 127, 269, 295
TatI	WGTACW	1 cut(s)	603
TfiI	GAWTC	3 cut(s)	66, 218, 512
Tru1I	TTAA	4 cut(s)	45, 57, 272, 661
Tru9I	TTAA	4 cut(s)	45, 57, 272, 661
TscAI	CASTG	5 cut(s)	139, 211, 282, 466, 504
TspDTI	ATGAA	1 cut(s)	302
TspGWI	ACGGA	1 cut(s)	407
TspRI	CASTG	5 cut(s)	139, 211, 282, 466, 504
VneI	GTGCAC	1 cut(s)	202
XceI	RCATGY	1 cut(s)	449
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XhoI	CTCGAG	1 cut(s)	61
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.