Rh6CG128500

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0004218
Physical Location & Seq
Forward (+)
15368384 .. 15375268
6885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG128500.1

Sequence Viewer

Length: 1017 bp
ATGCGATCCAACATGATCATTTACGTTAGATTCTGGCTGTGGCATGCTTTTATTCTACTGCTGCTTACTTCCAACTTTGCTCTTGCACAGTCGATCATCAAGAACTTACCAGCCTTCCAGGGTGACCTCCCTTTCAAGCTTGAAACTGGGTATGTGGGCGTGGGAGATTCAGAAGAGGTGCAACTGTTCTACTACTTTGTTGAGTCAGAAAGGAGTCCAGAAAATGATCCTCTGCTGATTTGGTTGACAGGAGGTCCTCGATGCTCTTCGTTTTATGGCCTCATCTACGAAATTGGTCCATTATCTTTCAAACTTACAAATTTGACTACAGATCCCTTAACACTTGTTCTGAATCCAAACTCGTGGAACAAGGTAGCAAACATCATATTCTTAGATGCTCCTGCTGGTACTGGTTACTCCTACTCCACCACTTCCCACGGGTTAATCTCTAGTGACACCTTACATTCAACCCGTATTTGTGAGTTTCTCCAGAAGTGGCTTACGACTCATCAAAAGTTCCTTGCAAATCCACTCTATGTTGCTGGTGACTCTTACTCTGGCAAAATCGTTCCCATCATTGCCCAGAAGATAGCTGATGGTATTGAAGCTGGAATCAAGCCACATTTGAATCTCAAAGGATACATAGTTGGCAATCCAGCTTCAAATGGACAACAGGACGTTAATTCCAGAATTGTATACGCTCATCATCTGGGACTTATATCAGATAGAATATATCAGTCAGCTAACAGGAATTGCAAGGGCGAATTTGTAGATTTTGATCCAAACAATCAACTGTGCCTGAACAGCCTTCAAGTAATCGATGAGTGCATTGGGAGAATTGATAAAGAACATATCTTGGCACCATTTTGCCTTGCATCAATTAACCATAACCAAAATTCCATACTGGAAATGAACTGGGAGTCTAATGATGACAGTTTCTTGGACTTTTCATTTCCTATGGTACAAATGTGTAGGGTAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

338

Amino Acids

37.88

Weight (kDa)

5.43

Isoelectric Point (pI)

34.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 37 - 300 1.8e-82 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 859
AccI GTMKAC 1 cut(s) 696
AclWI GGATC 3 cut(s) 221, 326, 773
AcsI RAATTY 3 cut(s) 319, 764, 895
AfaI GTAC 2 cut(s) 409, 963
AgsI TTSAA 8 cut(s) 136, 143, 310, 468, 605, 628, 663, 812
AhdI GACNNNNNGTC 1 cut(s) 252
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 5 cut(s) 139, 593, 608, 659, 743
AluI AGCT 5 cut(s) 139, 593, 608, 659, 743
AlwI GGATC 3 cut(s) 221, 326, 773
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 1 cut(s) 61
ApoI RAATTY 3 cut(s) 319, 764, 895
AspS9I GGNCC 2 cut(s) 254, 296
AsuHPI GGTGA 2 cut(s) 134, 557
AvaII GGWCC 2 cut(s) 254, 296
BaeI ACNNNNGTAYC 2 cut(s) 953, 986
BanI GGYRCC 1 cut(s) 859
BauI CACGAG 1 cut(s) 361
BbvI GCAGC 1 cut(s) 48
BccI CCATC 2 cut(s) 581, 590
BciT130I CCWGG 1 cut(s) 119
BciVI GTATCC 1 cut(s) 632
BclI TGATCA 1 cut(s) 15
BfaI CTAG 1 cut(s) 450
BfmI CTRYAG 2 cut(s) 327, 1013
BfuI GTATCC 1 cut(s) 632
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
Bme1390I CCNGG 1 cut(s) 119
Bme18I GGWCC 2 cut(s) 254, 296
BmeRI GACNNNNNGTC 1 cut(s) 252
BmgT120I GGNCC 2 cut(s) 254, 296
BmiI GGNNCC 1 cut(s) 861
BmrFI CCNGG 1 cut(s) 119
BmrI ACTGGG 2 cut(s) 156, 925
BmsI GCATC 3 cut(s) 251, 385, 884
BmuI ACTGGG 2 cut(s) 156, 925
BpmI CTGGAG 1 cut(s) 473
Bsa29I ATCGAT 1 cut(s) 819
BsaBI GATNNNNATC 1 cut(s) 777
BsaJI CCNNGG 2 cut(s) 118, 436
BsaXI ACNNNNNCTCC 2 cut(s) 407, 437
Bse1I ACTGG 4 cut(s) 151, 415, 909, 920
Bse3DI GCAATG 1 cut(s) 576
Bse8I GATNNNNATC 1 cut(s) 777
BseBI CCWGG 1 cut(s) 119
BseCI ATCGAT 1 cut(s) 819
BseDI CCNNGG 2 cut(s) 118, 436
BseJI GATNNNNATC 1 cut(s) 777
BseMI GCAATG 1 cut(s) 576
BseNI ACTGG 4 cut(s) 151, 415, 909, 920
BseXI GCAGC 1 cut(s) 48
BshFI GGCC 1 cut(s) 279
BshNI GGYRCC 1 cut(s) 859
BshVI ATCGAT 1 cut(s) 819
BslFI GGGAC 1 cut(s) 726
BsmFI GGGAC 1 cut(s) 726
BsnI GGCC 1 cut(s) 279
Bsp143I GATC 6 cut(s) 5, 15, 93, 226, 331, 778
BspANI GGCC 1 cut(s) 279
BspDI ATCGAT 1 cut(s) 819
BspLI GGNNCC 1 cut(s) 861
BspPI GGATC 3 cut(s) 221, 326, 773
BspQI GCTCTTC 1 cut(s) 271
BspT107I GGYRCC 1 cut(s) 859
BsrDI GCAATG 1 cut(s) 576
BsrI ACTGG 4 cut(s) 151, 415, 909, 920
BssECI CCNNGG 2 cut(s) 118, 436
BssMI GATC 6 cut(s) 5, 15, 93, 226, 331, 778
BssNAI GTATAC 1 cut(s) 697
BssSI CACGAG 1 cut(s) 361
Bst1107I GTATAC 1 cut(s) 697
Bst2BI CACGAG 1 cut(s) 361
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 4 cut(s) 90, 186, 795, 935
Bst6I CTCTTC 2 cut(s) 168, 271
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 391
BstDSI CCRYGG 1 cut(s) 436
BstEII GGTNACC 1 cut(s) 122
BstKTI GATC 6 cut(s) 8, 18, 96, 229, 334, 781
BstMBI GATC 6 cut(s) 5, 15, 93, 226, 331, 778
BstMWI GCNNNNNNNGC 1 cut(s) 804
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 47
BstPI GGTNACC 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 117
BstSFI CTRYAG 2 cut(s) 327, 1013
BstV1I GCAGC 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 331
BstXI CCANNNNNNTGG 1 cut(s) 363
BstYI RGATCY 1 cut(s) 331
BstZ17I GTATAC 1 cut(s) 697
Bsu15I ATCGAT 1 cut(s) 819
BsuI GTATCC 1 cut(s) 632
BsuRI GGCC 1 cut(s) 279
BsuTUI ATCGAT 1 cut(s) 819
BtgI CCRYGG 1 cut(s) 436
Cac8I GCNNGC 1 cut(s) 45
Cfr13I GGNCC 2 cut(s) 254, 296
ClaI ATCGAT 1 cut(s) 819
Csp6I GTAC 2 cut(s) 408, 962
CviAII CATG 2 cut(s) 13, 44
CviQI GTAC 2 cut(s) 408, 962
DdeI CTNAG 1 cut(s) 391
DpnI GATC 6 cut(s) 7, 17, 95, 228, 333, 780
DpnII GATC 6 cut(s) 5, 15, 93, 226, 331, 778
DriI GACNNNNNGTC 1 cut(s) 252
Eam1104I CTCTTC 2 cut(s) 168, 271
Eam1105I GACNNNNNGTC 1 cut(s) 252
EarI CTCTTC 2 cut(s) 168, 271
Eco47I GGWCC 2 cut(s) 254, 296
Eco91I GGTNACC 1 cut(s) 122
EcoO109I RGGNCCY 1 cut(s) 254
EcoO65I GGTNACC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 117
FaeI CATG 2 cut(s) 16, 47
FaqI GGGAC 1 cut(s) 726
FatI CATG 2 cut(s) 12, 43
FbaI TGATCA 1 cut(s) 15
FblI GTMKAC 1 cut(s) 696
Fnu4HI GCNGC 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 62
FspBI CTAG 1 cut(s) 450
GluI GCNGC 1 cut(s) 62
GsuI CTGGAG 1 cut(s) 473
HaeIII GGCC 1 cut(s) 279
Hin1II CATG 2 cut(s) 16, 47
HincII GTYRAC 1 cut(s) 246
HindII GTYRAC 1 cut(s) 246
HindIII AAGCTT 1 cut(s) 137
HphI GGTGA 2 cut(s) 134, 557
Hpy166II GTNNAC 2 cut(s) 246, 697
Hpy188I TCNGA 4 cut(s) 172, 208, 351, 724
Hpy188III TCNNGA 4 cut(s) 100, 218, 490, 687
Hpy8I GTNNAC 2 cut(s) 246, 697
HpyAV CCTTC 2 cut(s) 124, 818
HpyCH4III ACNGT 4 cut(s) 90, 186, 795, 935
HpyCH4IV ACGT 2 cut(s) 24, 678
HpyCH4V TGCA 6 cut(s) 86, 181, 524, 756, 828, 875
HpyF10VI GCNNNNNNNGC 1 cut(s) 804
HpyF3I CTNAG 1 cut(s) 391
HpySE526I ACGT 2 cut(s) 24, 678
Hsp92II CATG 2 cut(s) 16, 47
Ksp22I TGATCA 1 cut(s) 15
Kzo9I GATC 6 cut(s) 5, 15, 93, 226, 331, 778
LguI GCTCTTC 1 cut(s) 271
LmnI GCTCC 1 cut(s) 403
Lsp1109I GCAGC 1 cut(s) 48
LweI GCATC 3 cut(s) 251, 385, 884
MaeI CTAG 1 cut(s) 450
MaeII ACGT 2 cut(s) 24, 678
MaeIII GTNAC 4 cut(s) 122, 413, 452, 545
MalI GATC 6 cut(s) 7, 17, 95, 228, 333, 780
MboI GATC 6 cut(s) 5, 15, 93, 226, 331, 778
MboII GAAGA 3 cut(s) 185, 258, 598
MflI RGATCY 1 cut(s) 331
MluCI AATT 9 cut(s) 291, 319, 682, 690, 751, 764, 837, 879, 895
MlyI GAGTC 5 cut(s) 212, 223, 499, 542, 929
MmeI TCCRAC 2 cut(s) 33, 96
MnlI CCTC 6 cut(s) 137, 169, 240, 245, 267, 290
MseI TTAA 4 cut(s) 338, 443, 681, 882
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 804
NdeII GATC 6 cut(s) 5, 15, 93, 226, 331, 778
NlaIII CATG 2 cut(s) 16, 47
NlaIV GGNNCC 1 cut(s) 861
NmuCI GTSAC 3 cut(s) 122, 452, 545
NspI RCATGY 1 cut(s) 47
PaeI GCATGC 1 cut(s) 47
PciSI GCTCTTC 1 cut(s) 271
PfeI GAWTC 5 cut(s) 30, 167, 352, 612, 628
PkrI GCNGC 1 cut(s) 63
PleI GAGTC 5 cut(s) 211, 222, 499, 542, 928
PpsI GAGTC 5 cut(s) 211, 222, 499, 542, 928
PpuMI RGGWCCY 1 cut(s) 254
Psp5II RGGWCCY 1 cut(s) 254
Psp6I CCWGG 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 122
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 861
PspPI GGNCC 2 cut(s) 254, 296
PspPPI RGGWCCY 1 cut(s) 254
PsuI RGATCY 1 cut(s) 331
RsaI GTAC 2 cut(s) 409, 963
RsaNI GTAC 2 cut(s) 408, 962
SapI GCTCTTC 1 cut(s) 271
SaqAI TTAA 4 cut(s) 338, 443, 681, 882
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 6 cut(s) 5, 15, 93, 226, 331, 778
Sau96I GGNCC 2 cut(s) 254, 296
SchI GAGTC 5 cut(s) 212, 223, 499, 542, 929
ScrFI CCNGG 1 cut(s) 119
SfaNI GCATC 3 cut(s) 251, 385, 884
SfcI CTRYAG 2 cut(s) 327, 1013
SinI GGWCC 2 cut(s) 254, 296
SphI GCATGC 1 cut(s) 47
Sse9I AATT 9 cut(s) 291, 319, 682, 690, 751, 764, 837, 879, 895
SspMI CTAG 1 cut(s) 450
StyD4I CCNGG 1 cut(s) 117
TaaI ACNGT 4 cut(s) 90, 186, 795, 935
TaiI ACGT 2 cut(s) 27, 681
TaqI TCGA 3 cut(s) 92, 259, 819
TasI AATT 9 cut(s) 291, 319, 682, 690, 751, 764, 837, 879, 895
TfiI GAWTC 5 cut(s) 30, 167, 352, 612, 628
Tru1I TTAA 4 cut(s) 338, 443, 681, 882
Tru9I TTAA 4 cut(s) 338, 443, 681, 882
TseFI GTSAC 3 cut(s) 122, 452, 545
TseI GCWGC 1 cut(s) 61
Tsp45I GTSAC 3 cut(s) 122, 452, 545
TspDTI ATGAA 2 cut(s) 926, 939
VpaK11BI GGWCC 2 cut(s) 254, 296
XapI RAATTY 3 cut(s) 319, 764, 895
XceI RCATGY 1 cut(s) 47
XmiI GTMKAC 1 cut(s) 696
XspI CTAG 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.