Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004218

Physical Location & Seq

Genomic Coordinates Reverse (-)

16298649 .. 16303797

Gene Structure 5149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G148400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGAGCAGATCCAACAGAAGCCTCACGATCTGCATTAGATTATTGTCGCTGTGGAGAAAAGCACTTTTGCTGCTACTGCTGCTTCCCAACTTTTGTTCAACGCAGACAATCATCAAGAACTTACCAGGATTTTCTGGTGACCTCCCATTCAAGCTTGAAACTGGGTACTTTGGGGTAGGAAATAAGGATGAGCTGCAACTGTTCTACTATTTCATTGAGTCAGAAAGGAGCCCAGAAAATGATCCTCTGCTGCTTTGGATCACCGGAGGCCCTCGATGCTCTGCTTTTTCTGGCCTCGTTTATGAAATTGGTCCAATATCTTTCAGTTTTACAAGTATAACAAAGGATCCAGCAGAACTTGTTTTGAATCCATACTCATGGACAAAGTTAGCAAACATAATATTTCTAGACGCTCCTGCCGGTACTGGTTTCTCATACTCCACAACAACAGATGGCTACAACACTAGTGACTCCATTCATGCAAAACGAGCTTCTGATTTTCTTCAAAAGTGGCTTTCGACTCATCGCAAGTTTCTTGCAAATCCACTCTACATTTCTGGTGATTCGTACTCGGGCAAGATTGTTCCTATCATTGTTCAAGAGATAGTTAATGGTATTGAAGCTGGAACAGAGCCACCTTTGAATCTCAAAGGATACATAATCGGCGATCCAGTTACAAATGAAAAAGAGGATTTGAATTCGAGAATTGAATTTGCTCATCGCATGGCGCTTATATCAAATAGAATGTACGAGTCTACCAAAAGGAATTGCAAGGGGGAGTACGTAGACGTGGATCCGAACAATCAACTCTGCCTCAACAATCTTCAAGCTTTCAAGGAGTGCACTAGCAGACTTGACGATAGTCATATATTGGCACCTGCATGCGTTCCTCGTATCAATCACAACGAACAAACCACATTTGGGTGGGACTGGGACTCTGTTGATGATAATTTCTTAAGCTTTCCCTTTCCTGAAAGTTTGTGTCGAGTAGATAGGCTTCGGTATTCTGTGGTTTGGGCAAATGATATGAAAGTTCGTAAATCTCTTAACATTCGGGAGGGAACAAAAGGTGAATGGGCAAGATGCAATAGATCAACGCCTTACATAAAAGATGTTCAACGTGCTGTTGAATATCATCGAAATCTTAGCCAAAAATCTCTTCGGGCTTTTGTCTACAGTGGGGATCATGACTTGAGCGTTCCCTATGTAAGTACAGAAGCATGGATAGAATCCCTGAGCTTGCCAATTGATGATGATTGGAAACCATGGTTCTCTAACAATCAAGTTGCAGGATACACTGTCAGGTATTCGAATGGAGAGTATCATTTGACATATGCGACTATAAAGGGAGGAGGTCATACAGCTCCGGAGTTTAATCCAAAAGAATGCTTTGATATGATCAAACGGTGGCTAGAGCATTCTCCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

477

Amino Acids

54.21

Weight (kDa)

6.1

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004218)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08900 FvH4_2g08900 FvH4_2g08900 FvH4_2g08900 FvH4_2g08900 FvH4_2g08900 FvH4_2g08900 FvH4_2g08900 FvH4_2g08900 FvH4_2g08900 FvH4_2g08900 FvH4_2g08900 FvH4_2g08900 FvH4_2g08900
malus_domestica	MD05G1103800.v1.1
prunus_persica	Prupe.8G148200_v2.0.a1 Prupe.8G148400_v2.0.a1 Prupe.8G148400_v2.0.a1 Prupe.8G148400_v2.0.a1 Prupe.8G148500_v2.0.a1 Prupe.8G148500_v2.0.a1 Prupe.8G148500_v2.0.a1
pyrus_communis	pycom05g10080
rosa_chinensis	RchiOBHm_Chr6g0264501
rosa_multiflora	Rmu_sc0006954.1_g000007
rosa_roxburghii	Rroxscaffold_176G00431840 Rroxscaffold_5G00349140
rosa_rugosa	Rorug06G0015900 Rorug06G0016000
rosa_samantha	Rh6AG132800 Rh6BG130200 Rh6CG128500
rosa_wichuraiana	Rw0G020840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	886
Acc36I	ACCTGC	1 cut(s)	886
AccB1I	GGYRCC	1 cut(s)	874
AccI	GTMKAC	3 cut(s)	755, 786, 1173
AccIII	TCCGGA	1 cut(s)	1366
AclWI	GGATC	9 cut(s)	3, 236, 266, 341, 354, 662, 788, 801, 1191
AcsI	RAATTY	2 cut(s)	697, 710
AfaI	GTAC	6 cut(s)	167, 424, 569, 749, 782, 1213
AfiI	CCNNNNNNNGG	1 cut(s)	921
AflII	CTTAAG	1 cut(s)	955
AhlI	ACTAGT	1 cut(s)	464
AjiI	CACGTC	1 cut(s)	790
AjnI	CCWGG	1 cut(s)	124
AjuI	GAANNNNNNNTTGG	2 cut(s)	1143, 1175
AluBI	AGCT	8 cut(s)	154, 193, 491, 623, 830, 960, 1239, 1364
AluI	AGCT	8 cut(s)	154, 193, 491, 623, 830, 960, 1239, 1364
Alw21I	GWGCWC	1 cut(s)	845
Alw44I	GTGCAC	1 cut(s)	841
AlwI	GGATC	9 cut(s)	3, 236, 266, 341, 354, 662, 788, 801, 1191
Ama87I	CYCGRG	1 cut(s)	571
Aor13HI	TCCGGA	1 cut(s)	1366
AoxI	GGCC	2 cut(s)	268, 292
ApaLI	GTGCAC	1 cut(s)	841
ApeKI	GCWGC	4 cut(s)	70, 79, 193, 250
ApoI	RAATTY	2 cut(s)	697, 710
AspLEI	GCGC	1 cut(s)	730
AspS9I	GGNCC	2 cut(s)	269, 311
AsuHPI	GGTGA	4 cut(s)	149, 253, 572, 1082
AsuII	TTCGAA	1 cut(s)	1310
AvaI	CYCGRG	1 cut(s)	571
AvaII	GGWCC	1 cut(s)	311
BaeGI	GKGCMC	1 cut(s)	845
BamHI	GGATCC	2 cut(s)	346, 793
BanI	GGYRCC	1 cut(s)	874
BanII	GRGCYC	1 cut(s)	233
BarI	GAAGNNNNNNTAC	2 cut(s)	981, 1013
Bbv12I	GWGCWC	1 cut(s)	845
BbvI	GCAGC	4 cut(s)	57, 66, 180, 237
BccI	CCATC	1 cut(s)	446
BciT130I	CCWGG	1 cut(s)	126
BciVI	GTATCC	2 cut(s)	647, 1286
BclI	TGATCA	1 cut(s)	1398
BcuI	ACTAGT	1 cut(s)	464
BfaI	CTAG	4 cut(s)	407, 465, 846, 1412
BfmI	CTRYAG	1 cut(s)	1174
BfoI	RGCGCY	1 cut(s)	731
BfrI	CTTAAG	1 cut(s)	955
BfuAI	ACCTGC	1 cut(s)	886
BfuI	GTATCC	2 cut(s)	647, 1286
BisI	GCNGC	4 cut(s)	71, 80, 194, 251
BlsI	GCNGC	4 cut(s)	72, 81, 195, 252
Bme1390I	CCNGG	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	311
BmeT110I	CYCGRG	1 cut(s)	571
BmgBI	CACGTC	1 cut(s)	790
BmgT120I	GGNCC	2 cut(s)	269, 311
BmiI	GGNNCC	4 cut(s)	230, 348, 795, 876
BmrFI	CCNGG	1 cut(s)	126
BmrI	ACTGGG	2 cut(s)	171, 940
BmsI	GCATC	2 cut(s)	266, 1073
BmuI	ACTGGG	2 cut(s)	171, 940
BoxI	GACNNNNGTC	1 cut(s)	861
Bpu10I	CCTNAGC	1 cut(s)	1235
Bpu14I	TTCGAA	1 cut(s)	1310
BpuEI	CTTGAG	1 cut(s)	1213
BsaAI	YACGTR	1 cut(s)	784
BsaJI	CCNNGG	1 cut(s)	1265
BsaWI	WCCGGW	2 cut(s)	263, 1366
Bsc4I	CCNNNNNNNGG	1 cut(s)	921
Bse118I	RCCGGY	1 cut(s)	419
Bse1I	ACTGG	4 cut(s)	166, 430, 671, 935
BseAI	TCCGGA	1 cut(s)	1366
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	1265
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	1 cut(s)	921
BseMII	CTCAG	1 cut(s)	1226
BseNI	ACTGG	4 cut(s)	166, 430, 671, 935
BseRI	GAGGAG	2 cut(s)	1365, 1413
BseSI	GKGCMC	1 cut(s)	845
BseXI	GCAGC	4 cut(s)	57, 66, 180, 237
BshFI	GGCC	2 cut(s)	270, 294
BshNI	GGYRCC	1 cut(s)	874
BsiHKAI	GWGCWC	1 cut(s)	845
BsiHKCI	CYCGRG	1 cut(s)	571
BsiSI	CCGG	3 cut(s)	264, 420, 1367
BslFI	GGGAC	2 cut(s)	941, 947
BslI	CCNNNNNNNGG	1 cut(s)	921
BsmFI	GGGAC	2 cut(s)	941, 947
BsmI	GAATGC	2 cut(s)	1391, 1417
BsnI	GGCC	2 cut(s)	270, 294
BsoBI	CYCGRG	1 cut(s)	571
Bsp119I	TTCGAA	1 cut(s)	1310
Bsp1286I	GDGCHC	2 cut(s)	233, 845
Bsp13I	TCCGGA	1 cut(s)	1366
Bsp19I	CCATGG	1 cut(s)	1265
BspANI	GGCC	2 cut(s)	270, 294
BspCNI	CTCAG	1 cut(s)	1227
BspEI	TCCGGA	1 cut(s)	1366
BspHI	TCATGA	1 cut(s)	1186
BspLI	GGNNCC	4 cut(s)	230, 348, 795, 876
BspMI	ACCTGC	1 cut(s)	886
BspPI	GGATC	9 cut(s)	3, 236, 266, 341, 354, 662, 788, 801, 1191
BspT104I	TTCGAA	1 cut(s)	1310
BspT107I	GGYRCC	1 cut(s)	874
BspTI	CTTAAG	1 cut(s)	955
BsrFI	RCCGGY	1 cut(s)	419
BsrI	ACTGG	4 cut(s)	166, 430, 671, 935
BssAI	RCCGGY	1 cut(s)	419
BssECI	CCNNGG	1 cut(s)	1265
BssT1I	CCWWGG	1 cut(s)	1265
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	4 cut(s)	201, 1178, 1300, 1407
Bst6I	CTCTTC	1 cut(s)	1164
BstAFI	CTTAAG	1 cut(s)	955
BstBAI	YACGTR	1 cut(s)	784
BstBI	TTCGAA	1 cut(s)	1310
BstC8I	GCNNGC	2 cut(s)	883, 1241
BstDEI	CTNAG	2 cut(s)	1145, 1235
BstDSI	CCRYGG	1 cut(s)	1265
BstEII	GGTNACC	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	193
BstH2I	RGCGCY	1 cut(s)	731
BstHHI	GCGC	1 cut(s)	730
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 79, 276, 488
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	885
BstPAI	GACNNNNGTC	1 cut(s)	861
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	124
BstSFI	CTRYAG	1 cut(s)	1174
BstSLI	GKGCMC	1 cut(s)	845
BstSNI	TACGTA	1 cut(s)	784
BstV1I	GCAGC	4 cut(s)	57, 66, 180, 237
BstX2I	RGATCY	3 cut(s)	8, 346, 793
BstXI	CCANNNNNNTGG	1 cut(s)	378
BstYI	RGATCY	3 cut(s)	8, 346, 793
BsuI	GTATCC	2 cut(s)	647, 1286
BsuRI	GGCC	2 cut(s)	270, 294
BtgI	CCRYGG	1 cut(s)	1265
BtgZI	GCGATG	2 cut(s)	509, 704
BtrI	CACGTC	1 cut(s)	790
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	2 cut(s)	1183, 1296
BveI	ACCTGC	1 cut(s)	886
Cac8I	GCNNGC	2 cut(s)	883, 1241
CciI	TCATGA	1 cut(s)	1186
CfoI	GCGC	1 cut(s)	730
Cfr10I	RCCGGY	1 cut(s)	419
Cfr13I	GGNCC	2 cut(s)	269, 311
CseI	GACGC	1 cut(s)	419
Csp6I	GTAC	6 cut(s)	166, 423, 568, 748, 781, 1212
CviAII	CATG	7 cut(s)	378, 479, 724, 882, 1187, 1221, 1266
CviQI	GTAC	6 cut(s)	166, 423, 568, 748, 781, 1212
DdeI	CTNAG	2 cut(s)	1145, 1235
Eam1104I	CTCTTC	1 cut(s)	1164
EarI	CTCTTC	1 cut(s)	1164
Eco105I	TACGTA	1 cut(s)	784
Eco130I	CCWWGG	1 cut(s)	1265
Eco24I	GRGCYC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	311
Eco88I	CYCGRG	1 cut(s)	571
Eco91I	GGTNACC	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	269
EcoO65I	GGTNACC	1 cut(s)	137
EcoRI	GAATTC	1 cut(s)	697
EcoRII	CCWGG	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	1265
EcoT38I	GRGCYC	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	1265
FaeI	CATG	7 cut(s)	381, 482, 727, 885, 1190, 1224, 1269
FaqI	GGGAC	2 cut(s)	941, 947
FatI	CATG	7 cut(s)	377, 478, 723, 881, 1186, 1220, 1265
FauNDI	CATATG	1 cut(s)	1333
FbaI	TGATCA	1 cut(s)	1398
FblI	GTMKAC	3 cut(s)	755, 786, 1173
Fnu4HI	GCNGC	4 cut(s)	71, 80, 194, 251
FokI	GGATG	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	4 cut(s)	71, 80, 194, 251
FspBI	CTAG	4 cut(s)	407, 465, 846, 1412
GlaI	GCGC	1 cut(s)	729
GluI	GCNGC	4 cut(s)	71, 80, 194, 251
HaeII	RGCGCY	1 cut(s)	731
HaeIII	GGCC	2 cut(s)	270, 294
HapII	CCGG	3 cut(s)	264, 420, 1367
HgaI	GACGC	1 cut(s)	419
HhaI	GCGC	1 cut(s)	730
Hin1II	CATG	7 cut(s)	381, 482, 727, 885, 1190, 1224, 1269
Hin6I	GCGC	1 cut(s)	728
HinP1I	GCGC	1 cut(s)	728
HindIII	AAGCTT	3 cut(s)	152, 828, 958
HinfI	GANTC	9 cut(s)	218, 367, 470, 520, 563, 643, 752, 935, 1229
HpaII	CCGG	3 cut(s)	264, 420, 1367
HphI	GGTGA	4 cut(s)	149, 253, 572, 1082
Hpy166II	GTNNAC	4 cut(s)	756, 787, 843, 1174
Hpy188I	TCNGA	3 cut(s)	223, 496, 798
Hpy188III	TCNNGA	9 cut(s)	25, 115, 407, 599, 702, 971, 1055, 1187, 1367
Hpy8I	GTNNAC	4 cut(s)	756, 787, 843, 1174
HpyCH4III	ACNGT	4 cut(s)	201, 1178, 1300, 1407
HpyCH4IV	ACGT	3 cut(s)	783, 789, 1120
HpyCH4V	TGCA	9 cut(s)	33, 196, 482, 539, 771, 843, 881, 1086, 1289
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 79, 276, 488
HpyF3I	CTNAG	2 cut(s)	1145, 1235
HpySE526I	ACGT	3 cut(s)	783, 789, 1120
Hsp92II	CATG	7 cut(s)	381, 482, 727, 885, 1190, 1224, 1269
HspAI	GCGC	1 cut(s)	728
Kpn2I	TCCGGA	1 cut(s)	1366
Ksp22I	TGATCA	1 cut(s)	1398
LmnI	GCTCC	3 cut(s)	228, 418, 1369
Lsp1109I	GCAGC	4 cut(s)	57, 66, 180, 237
LweI	GCATC	2 cut(s)	266, 1073
MaeI	CTAG	4 cut(s)	407, 465, 846, 1412
MaeII	ACGT	3 cut(s)	783, 789, 1120
MaeIII	GTNAC	3 cut(s)	137, 467, 673
MboII	GAAGA	3 cut(s)	494, 815, 1151
MfeI	CAATTG	1 cut(s)	1245
MflI	RGATCY	3 cut(s)	8, 346, 793
MhlI	GDGCHC	2 cut(s)	233, 845
MluCI	AATT	7 cut(s)	306, 697, 705, 710, 766, 949, 1245
MlyI	GAGTC	5 cut(s)	227, 464, 514, 761, 929
MmeI	TCCRAC	1 cut(s)	36
MroI	TCCGGA	1 cut(s)	1366
MseI	TTAA	5 cut(s)	609, 956, 1047, 1374, 1429
MslI	CAYNNNNRTG	3 cut(s)	376, 880, 922
MspCI	CTTAAG	1 cut(s)	955
MspI	CCGG	3 cut(s)	264, 420, 1367
MspR9I	CCNGG	1 cut(s)	126
MunI	CAATTG	1 cut(s)	1245
Mva1269I	GAATGC	2 cut(s)	1391, 1417
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	4 cut(s)	76, 79, 276, 488
NcoI	CCATGG	1 cut(s)	1265
NdeI	CATATG	1 cut(s)	1333
NlaIII	CATG	7 cut(s)	381, 482, 727, 885, 1190, 1224, 1269
NlaIV	GGNNCC	4 cut(s)	230, 348, 795, 876
NmuCI	GTSAC	2 cut(s)	137, 467
NspI	RCATGY	1 cut(s)	885
NspV	TTCGAA	1 cut(s)	1310
PaeI	GCATGC	1 cut(s)	885
PagI	TCATGA	1 cut(s)	1186
PaqCI	CACCTGC	1 cut(s)	886
PctI	GAATGC	2 cut(s)	1391, 1417
PfeI	GAWTC	4 cut(s)	367, 563, 643, 1229
PkrI	GCNGC	4 cut(s)	72, 81, 195, 252
PleI	GAGTC	5 cut(s)	226, 464, 514, 760, 929
PpsI	GAGTC	5 cut(s)	226, 464, 514, 760, 929
Ppu21I	YACGTR	1 cut(s)	784
PshAI	GACNNNNGTC	1 cut(s)	861
Psp6I	CCWGG	1 cut(s)	124
PspEI	GGTNACC	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	4 cut(s)	230, 348, 795, 876
PspPI	GGNCC	2 cut(s)	269, 311
PsuI	RGATCY	3 cut(s)	8, 346, 793
RsaI	GTAC	6 cut(s)	167, 424, 569, 749, 782, 1213
RsaNI	GTAC	6 cut(s)	166, 423, 568, 748, 781, 1212
RseI	CAYNNNNRTG	3 cut(s)	376, 880, 922
SaqAI	TTAA	5 cut(s)	609, 956, 1047, 1374, 1429
SatI	GCNGC	4 cut(s)	71, 80, 194, 251
Sau96I	GGNCC	2 cut(s)	269, 311
SchI	GAGTC	5 cut(s)	227, 464, 514, 761, 929
ScrFI	CCNGG	1 cut(s)	126
SduI	GDGCHC	2 cut(s)	233, 845
SfaNI	GCATC	2 cut(s)	266, 1073
SfcI	CTRYAG	1 cut(s)	1174
SfuI	TTCGAA	1 cut(s)	1310
SinI	GGWCC	1 cut(s)	311
SmiMI	CAYNNNNRTG	3 cut(s)	376, 880, 922
SmlI	CTYRAG	2 cut(s)	955, 1192
SmoI	CTYRAG	2 cut(s)	955, 1192
SnaBI	TACGTA	1 cut(s)	784
SpeI	ACTAGT	1 cut(s)	464
SphI	GCATGC	1 cut(s)	885
Sse9I	AATT	7 cut(s)	306, 697, 705, 710, 766, 949, 1245
SspI	AATATT	1 cut(s)	402
SspMI	CTAG	4 cut(s)	407, 465, 846, 1412
StyD4I	CCNGG	1 cut(s)	124
StyI	CCWWGG	1 cut(s)	1265
TaaI	ACNGT	4 cut(s)	201, 1178, 1300, 1407
TaiI	ACGT	3 cut(s)	786, 792, 1123
TaqI	TCGA	6 cut(s)	274, 518, 701, 985, 1138, 1310
TasI	AATT	7 cut(s)	306, 697, 705, 710, 766, 949, 1245
TatI	WGTACW	1 cut(s)	1211
TfiI	GAWTC	4 cut(s)	367, 563, 643, 1229
Tru1I	TTAA	5 cut(s)	609, 956, 1047, 1374, 1429
Tru9I	TTAA	5 cut(s)	609, 956, 1047, 1374, 1429
TscAI	CASTG	2 cut(s)	1183, 1303
TseFI	GTSAC	2 cut(s)	137, 467
TseI	GCWGC	4 cut(s)	70, 79, 193, 250
Tsp45I	GTSAC	2 cut(s)	137, 467
TspDTI	ATGAA	5 cut(s)	202, 318, 467, 696, 1043
TspRI	CASTG	2 cut(s)	1183, 1303
Vha464I	CTTAAG	1 cut(s)	955
VneI	GTGCAC	1 cut(s)	841
VpaK11BI	GGWCC	1 cut(s)	311
XapI	RAATTY	2 cut(s)	697, 710
XbaI	TCTAGA	1 cut(s)	406
XceI	RCATGY	1 cut(s)	885
XmiI	GTMKAC	3 cut(s)	755, 786, 1173
XspI	CTAG	4 cut(s)	407, 465, 846, 1412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.