Rh6BG130200

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0004218
Physical Location & Seq
Forward (+)
20232476 .. 20239409
6934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG130200.1

Sequence Viewer

Length: 933 bp
ATGATTCCAAGGTATGTGGGCGTGGGAGATTCAGAAGAGGTGCAACTGTTCTACTACTTTGTTGAGTCAGAAAGGAGTCCAGAAAATGATCCTCTGCTGATTTGGTTGACAGGAGGTCCTCGATGCTCTTCGTTTTATGGCCTCATCTACGAAATTGGTCCATTATCTTTCAAACTTACAAATTTGACTACAGATCCCTTAACACTTGTTCTGAATCCAAACTCGTGGAACAAGGTAGCAAACATCATATTCTTAGATGCTCCTGCTGGTACTGGTTACTCCTACTCCACCACTTCCCACGGGTTAATCTCTAGTGACACCTTACATTCAACCCGTATTTGTGAGTTTCTCCAGAAGTGGCTTACGACTCATCAAAAGTTCCTTGCAAATCCACTCTATGTTGCTGGTGACTCTTACTCTGGCAAAATCGTTCCCATCATTGCCCAGAAGATAGCTGATGGTATTGAAGCTGGAATCAAGCCACATTTGAATCTCAAAGGATACATAGTTGGCAATCCAGCTTCAAATGGACAACAGGACGTTAATTCCAGAATTGTATACGCTCATCATCTGGGACTTATATCAGATAGAATATATCAGTCAGCTAACAGGAATTGCAAGGGCGAATTTGTAGATTTTGATCCAAACAATCAACTGTGCCTGAACAGCCTTCAAGTAATCGATGAGTGCATTGGGAGAATTGATAAAGAACATATCTTGGCACCATTTTGCCTTGCATCAATTAACCATAACCAAAATTCCATACTGGAAATGAACTGGGAGTCTAATGATGACAGTTTCTTGGACTTTTCATTTCCTATGGTACAAATGTGTAGGGAAGATAAGATTCGGTATTCCGTTCTATGGCAAAATGATATAAATGTTCGCAAAGCTCTTAGTATTCGGGAGGTAAGTTTGCTACCTTTATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

310

Amino Acids

34.93

Weight (kDa)

5.35

Isoelectric Point (pI)

32.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 5 - 302 7.4e-81 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 721
AccI GTMKAC 1 cut(s) 558
AclWI GGATC 3 cut(s) 83, 188, 635
AcsI RAATTY 3 cut(s) 181, 626, 757
AfaI GTAC 2 cut(s) 271, 825
AfiI CCNNNNNNNGG 1 cut(s) 864
AgsI TTSAA 6 cut(s) 172, 330, 467, 490, 525, 674
AhdI GACNNNNNGTC 1 cut(s) 114
AluBI AGCT 5 cut(s) 455, 470, 521, 605, 893
AluI AGCT 5 cut(s) 455, 470, 521, 605, 893
AlwI GGATC 3 cut(s) 83, 188, 635
AoxI GGCC 1 cut(s) 139
ApoI RAATTY 3 cut(s) 181, 626, 757
AspS9I GGNCC 2 cut(s) 116, 158
AsuHPI GGTGA 1 cut(s) 419
AvaII GGWCC 2 cut(s) 116, 158
BaeI ACNNNNGTAYC 2 cut(s) 815, 848
BanI GGYRCC 1 cut(s) 721
BauI CACGAG 1 cut(s) 223
BccI CCATC 2 cut(s) 443, 452
BciVI GTATCC 1 cut(s) 494
BfaI CTAG 1 cut(s) 312
BfmI CTRYAG 1 cut(s) 189
BfuI GTATCC 1 cut(s) 494
Bme18I GGWCC 2 cut(s) 116, 158
BmeRI GACNNNNNGTC 1 cut(s) 114
BmgT120I GGNCC 2 cut(s) 116, 158
BmiI GGNNCC 1 cut(s) 723
BmrI ACTGGG 1 cut(s) 787
BmsI GCATC 3 cut(s) 113, 247, 746
BmuI ACTGGG 1 cut(s) 787
BpmI CTGGAG 1 cut(s) 335
Bsa29I ATCGAT 1 cut(s) 681
BsaBI GATNNNNATC 1 cut(s) 639
BsaJI CCNNGG 2 cut(s) 8, 298
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 1 cut(s) 864
Bse1I ACTGG 3 cut(s) 277, 771, 782
Bse3DI GCAATG 1 cut(s) 438
Bse8I GATNNNNATC 1 cut(s) 639
BseCI ATCGAT 1 cut(s) 681
BseDI CCNNGG 2 cut(s) 8, 298
BseJI GATNNNNATC 1 cut(s) 639
BseLI CCNNNNNNNGG 1 cut(s) 864
BseMI GCAATG 1 cut(s) 438
BseNI ACTGG 3 cut(s) 277, 771, 782
BshFI GGCC 1 cut(s) 141
BshNI GGYRCC 1 cut(s) 721
BshVI ATCGAT 1 cut(s) 681
BslFI GGGAC 1 cut(s) 588
BslI CCNNNNNNNGG 1 cut(s) 864
BsmFI GGGAC 1 cut(s) 588
BsnI GGCC 1 cut(s) 141
Bsp143I GATC 3 cut(s) 88, 193, 640
BspANI GGCC 1 cut(s) 141
BspDI ATCGAT 1 cut(s) 681
BspLI GGNNCC 1 cut(s) 723
BspPI GGATC 3 cut(s) 83, 188, 635
BspQI GCTCTTC 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 721
BsrDI GCAATG 1 cut(s) 438
BsrI ACTGG 3 cut(s) 277, 771, 782
BssECI CCNNGG 2 cut(s) 8, 298
BssMI GATC 3 cut(s) 88, 193, 640
BssNAI GTATAC 1 cut(s) 559
BssSI CACGAG 1 cut(s) 223
BssT1I CCWWGG 1 cut(s) 8
Bst1107I GTATAC 1 cut(s) 559
Bst2BI CACGAG 1 cut(s) 223
Bst4CI ACNGT 3 cut(s) 48, 657, 797
Bst6I CTCTTC 2 cut(s) 30, 133
BstDEI CTNAG 2 cut(s) 253, 896
BstDSI CCRYGG 1 cut(s) 298
BstKTI GATC 3 cut(s) 91, 196, 643
BstMBI GATC 3 cut(s) 88, 193, 640
BstMWI GCNNNNNNNGC 1 cut(s) 666
BstSFI CTRYAG 1 cut(s) 189
BstX2I RGATCY 1 cut(s) 193
BstXI CCANNNNNNTGG 1 cut(s) 225
BstYI RGATCY 1 cut(s) 193
BstZ17I GTATAC 1 cut(s) 559
Bsu15I ATCGAT 1 cut(s) 681
BsuI GTATCC 1 cut(s) 494
BsuRI GGCC 1 cut(s) 141
BsuTUI ATCGAT 1 cut(s) 681
BtgI CCRYGG 1 cut(s) 298
Cfr13I GGNCC 2 cut(s) 116, 158
ClaI ATCGAT 1 cut(s) 681
Csp6I GTAC 2 cut(s) 270, 824
CspCI CAANNNNNGTGG 1 cut(s) 32
CviJI RGCY 9 cut(s) 141, 361, 455, 470, 481, 521, 605, 669, 893
CviKI_1 RGCY 9 cut(s) 141, 361, 455, 470, 481, 521, 605, 669, 893
CviQI GTAC 2 cut(s) 270, 824
DdeI CTNAG 2 cut(s) 253, 896
DpnI GATC 3 cut(s) 90, 195, 642
DpnII GATC 3 cut(s) 88, 193, 640
DriI GACNNNNNGTC 1 cut(s) 114
Eam1104I CTCTTC 2 cut(s) 30, 133
Eam1105I GACNNNNNGTC 1 cut(s) 114
EarI CTCTTC 2 cut(s) 30, 133
Eco130I CCWWGG 1 cut(s) 8
Eco47I GGWCC 2 cut(s) 116, 158
EcoO109I RGGNCCY 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 8
FaqI GGGAC 1 cut(s) 588
FblI GTMKAC 1 cut(s) 558
FspBI CTAG 1 cut(s) 312
GsuI CTGGAG 1 cut(s) 335
HaeIII GGCC 1 cut(s) 141
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HphI GGTGA 1 cut(s) 419
Hpy166II GTNNAC 2 cut(s) 108, 559
Hpy188I TCNGA 4 cut(s) 34, 70, 213, 586
Hpy188III TCNNGA 4 cut(s) 80, 352, 549, 905
Hpy8I GTNNAC 2 cut(s) 108, 559
HpyAV CCTTC 1 cut(s) 680
HpyCH4III ACNGT 3 cut(s) 48, 657, 797
HpyCH4IV ACGT 1 cut(s) 540
HpyCH4V TGCA 5 cut(s) 43, 386, 618, 690, 737
HpyF10VI GCNNNNNNNGC 1 cut(s) 666
HpyF3I CTNAG 2 cut(s) 253, 896
HpySE526I ACGT 1 cut(s) 540
Kzo9I GATC 3 cut(s) 88, 193, 640
LguI GCTCTTC 1 cut(s) 133
LmnI GCTCC 1 cut(s) 265
LweI GCATC 3 cut(s) 113, 247, 746
MaeI CTAG 1 cut(s) 312
MaeII ACGT 1 cut(s) 540
MaeIII GTNAC 3 cut(s) 275, 314, 407
MalI GATC 3 cut(s) 90, 195, 642
MboI GATC 3 cut(s) 88, 193, 640
MboII GAAGA 4 cut(s) 47, 120, 460, 851
MflI RGATCY 1 cut(s) 193
MluCI AATT 9 cut(s) 153, 181, 544, 552, 613, 626, 699, 741, 757
MlyI GAGTC 5 cut(s) 74, 85, 361, 404, 791
MnlI CCTC 6 cut(s) 31, 102, 107, 129, 152, 901
MseI TTAA 5 cut(s) 200, 305, 543, 744, 931
MwoI GCNNNNNNNGC 1 cut(s) 666
NdeII GATC 3 cut(s) 88, 193, 640
NlaIV GGNNCC 1 cut(s) 723
NmuCI GTSAC 2 cut(s) 314, 407
PciSI GCTCTTC 1 cut(s) 133
PfeI GAWTC 6 cut(s) 4, 29, 214, 474, 490, 847
PleI GAGTC 5 cut(s) 73, 84, 361, 404, 790
PpsI GAGTC 5 cut(s) 73, 84, 361, 404, 790
PpuMI RGGWCCY 1 cut(s) 116
Psp5II RGGWCCY 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 723
PspPI GGNCC 2 cut(s) 116, 158
PspPPI RGGWCCY 1 cut(s) 116
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 2 cut(s) 271, 825
RsaNI GTAC 2 cut(s) 270, 824
SapI GCTCTTC 1 cut(s) 133
SaqAI TTAA 5 cut(s) 200, 305, 543, 744, 931
Sau3AI GATC 3 cut(s) 88, 193, 640
Sau96I GGNCC 2 cut(s) 116, 158
SchI GAGTC 5 cut(s) 74, 85, 361, 404, 791
SfaNI GCATC 3 cut(s) 113, 247, 746
SfcI CTRYAG 1 cut(s) 189
SinI GGWCC 2 cut(s) 116, 158
Sse9I AATT 9 cut(s) 153, 181, 544, 552, 613, 626, 699, 741, 757
SspMI CTAG 1 cut(s) 312
StyI CCWWGG 1 cut(s) 8
TaaI ACNGT 3 cut(s) 48, 657, 797
TaiI ACGT 1 cut(s) 543
TaqI TCGA 2 cut(s) 121, 681
TasI AATT 9 cut(s) 153, 181, 544, 552, 613, 626, 699, 741, 757
TfiI GAWTC 6 cut(s) 4, 29, 214, 474, 490, 847
Tru1I TTAA 5 cut(s) 200, 305, 543, 744, 931
Tru9I TTAA 5 cut(s) 200, 305, 543, 744, 931
TseFI GTSAC 2 cut(s) 314, 407
Tsp45I GTSAC 2 cut(s) 314, 407
TspDTI ATGAA 2 cut(s) 788, 801
TspGWI ACGGA 1 cut(s) 847
VpaK11BI GGWCC 2 cut(s) 116, 158
XapI RAATTY 3 cut(s) 181, 626, 757
XmiI GTMKAC 1 cut(s) 558
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.