MD05G1169100.v1.1

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
29893188 .. 29899109
5922 bp
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UTR
Exon/CDS
Intron
MD05G1169100.v1.1.491

Sequence Viewer

Length: 1305 bp
ATGGAAAGATATAAAATTTTGGAAGAGCTTGGTGATGGCACTTGTGGTTGTGTATATAAGGCTCGTGATTTGAGAACAAAGGAGATTGTTGCTGTCAAGAAGATGAAGAGGAAGTTCTATTTCTGGGAGGAATACTGGAGGTTACGAGAGATTAAGGTACTTCGGAAACTAAATCATCCCAATATCATAAAGTTAAAGGAGGTTGTCAGGGAAAACAATGAGGTGTTCCTCATTTTTGAATATATGAACTATAATTTGTACCAAATAATGAAAGAACAAAGAAGACCCTTTTCAGAGGATGAGATTCGTAGCTTTATGTCTCAACTGCTGCATGGACTCAGTCACCTCCATAAAAGTGGGTATTTTCACCGAGATCTAAAGCCAGAGAATTTGCTGGTGACGAATGACGTTCTTAAAATTGCCGATTTTGGCTTGGCTCGAGAAGTATCATCGATGCCCCCTTACACTGAATATGTTTCCACACGCTGGTATCGAGCACCAGAAGTCTTGTTGCAGTCCAAACTATACACTCCTGCAGTTGACATGTGGGCAGCTGGCGCAATCCTAGCTGAGCTTTGCACTTCATCCCCTATTTTCCCTGGTGAAAGTGAGATAGATCAATTCTTCAAGATCTGCTGTGTGCTTGGTACTCCAGACTTGACTGTCTTTCCTGAAGGGACAAATGCCTCTCGATTATATAGCTTTATCAATTATGAAAAGATCTTGCCCGCTAACCTCTGCGATATCATTCCAAATGCAAGTCCAGAAGCTATTGATTTGATCATGCAACTATGTTCATGGGATTCCTCAAGGAGGCCAACCGCCGATGAATCATTGCAACATCCTTTTTTCCAGGTGGGCTGGATTCCTCGTTCACTTCCTGATTCACTTGACCTGAAGCTGAGTAACATGGGGGCAAAGCCAACACTCGAGTTGAAATTATCGGACTTTGGTGCTGAGCCTGAGGACTGCTTTCTTGGCTTGACGTTGGCTGTGAAACCCAGTGTTCCAGACTTCGATGTGGTCCATGATGTATCTCATCATATGAAAGAGGATGCATTATTTTGCTCTGGTTTGGAAGATCGTTCTGGACGATCTGTATTTTGGTCTCTGATGCCCCCCGACCAACGTGGAATTTGTGCCCCAGTAGAGCCTTCCTTTTCTTTATCATTCAGTTCAATTCAGCATCCATCCGTCAGAGTTCCACAATCGGCTGGTTTCTCCATCCCATCCTTGCAGCCGAACATCTTAGATGGTCGATTTTTGACCGTGTCTCCTCCCTTCCCACAAAGCCATTGCCTTTAA

Protein Analysis

435

Amino Acids

49.61

Weight (kDa)

5.83

Isoelectric Point (pI)

53.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 284 1e-73 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 5 - 223 9.3e-37 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 662
AccB7I CCANNNNNTGG 1 cut(s) 486
AciI CCGC 2 cut(s) 729, 822
AcsI RAATTY 3 cut(s) 15, 388, 1134
AcuI CTGAAG 2 cut(s) 693, 917
AfaI GTAC 3 cut(s) 159, 260, 649
AfiI CCNNNNNNNGG 2 cut(s) 486, 813
AflIII ACRYGT 1 cut(s) 543
AgsI TTSAA 4 cut(s) 239, 628, 937, 1179
AjnI CCWGG 2 cut(s) 598, 852
AloI GAACNNNNNNTCC 2 cut(s) 856, 888
AluBI AGCT 8 cut(s) 28, 312, 554, 569, 574, 702, 770, 901
AluI AGCT 8 cut(s) 28, 312, 554, 569, 574, 702, 770, 901
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 3 cut(s) 324, 1113, 1278
Ama87I CYCGRG 2 cut(s) 438, 929
AoxI GGCC 1 cut(s) 815
ApeKI GCWGC 3 cut(s) 328, 551, 1237
ApoI RAATTY 3 cut(s) 15, 388, 1134
AspLEI GCGC 1 cut(s) 560
AspS9I GGNCC 1 cut(s) 1024
AsuHPI GGTGA 5 cut(s) 44, 335, 359, 409, 614
AvaI CYCGRG 2 cut(s) 438, 929
AvaII GGWCC 1 cut(s) 1024
AxyI CCTNAGG 1 cut(s) 963
BaeGI GKGCMC 1 cut(s) 1144
BaeI ACNNNNGTAYC 2 cut(s) 473, 506
BauI CACGAG 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 289
Bbv12I GWGCWC 1 cut(s) 499
BbvI GCAGC 3 cut(s) 315, 563, 1249
BccI CCATC 5 cut(s) 29, 1198, 1232, 1237, 1247
BciT130I CCWGG 2 cut(s) 600, 854
BclI TGATCA 1 cut(s) 780
BcoDI GTCTC 3 cut(s) 324, 1113, 1278
BfaI CTAG 1 cut(s) 566
BfmI CTRYAG 1 cut(s) 534
BglII AGATCT 3 cut(s) 373, 630, 720
BisI GCNGC 3 cut(s) 329, 552, 1238
BlpI GCTNAGC 2 cut(s) 570, 957
BlsI GCNGC 3 cut(s) 330, 553, 1239
Bme1390I CCNGG 2 cut(s) 600, 854
Bme18I GGWCC 1 cut(s) 1024
BmeT110I CYCGRG 2 cut(s) 438, 929
BmgT120I GGNCC 1 cut(s) 1024
BmrFI CCNGG 2 cut(s) 600, 854
BmrI ACTGGG 2 cut(s) 996, 1139
BmsI GCATC 4 cut(s) 444, 1045, 1104, 1195
BmuI ACTGGG 2 cut(s) 996, 1139
BpiI GAAGAC 1 cut(s) 289
BpmI CTGGAG 2 cut(s) 157, 636
Bpu1102I GCTNAGC 2 cut(s) 570, 957
BpuEI CTTGAG 1 cut(s) 793
Bsa29I ATCGAT 1 cut(s) 452
BsaI GGTCTC 1 cut(s) 1113
BsaJI CCNNGG 1 cut(s) 598
BsaXI ACNNNNNCTCC 2 cut(s) 1258, 1288
Bsc4I CCNNNNNNNGG 2 cut(s) 486, 813
Bse1I ACTGG 3 cut(s) 140, 1002, 1145
Bse21I CCTNAGG 1 cut(s) 963
Bse3DI GCAATG 2 cut(s) 833, 1294
BseBI CCWGG 2 cut(s) 600, 854
BseCI ATCGAT 1 cut(s) 452
BseDI CCNNGG 1 cut(s) 598
BseGI GGATG 9 cut(s) 175, 304, 584, 841, 1060, 1186, 1190, 1224, 1229
BseLI CCNNNNNNNGG 2 cut(s) 486, 813
BseMI GCAATG 2 cut(s) 833, 1294
BseMII CTCAG 5 cut(s) 352, 561, 893, 948, 954
BseNI ACTGG 3 cut(s) 140, 1002, 1145
BseRI GAGGAG 1 cut(s) 1266
BseSI GKGCMC 1 cut(s) 1144
BseXI GCAGC 3 cut(s) 315, 563, 1249
BshFI GGCC 1 cut(s) 817
BshVI ATCGAT 1 cut(s) 452
BsiHKAI GWGCWC 1 cut(s) 499
BsiHKCI CYCGRG 2 cut(s) 438, 929
BslFI GGGAC 1 cut(s) 691
BslI CCNNNNNNNGG 2 cut(s) 486, 813
BsmAI GTCTC 3 cut(s) 324, 1113, 1278
BsmFI GGGAC 1 cut(s) 691
BsnI GGCC 1 cut(s) 817
Bso31I GGTCTC 1 cut(s) 1113
BsoBI CYCGRG 2 cut(s) 438, 929
Bsp1286I GDGCHC 2 cut(s) 499, 1144
Bsp143I GATC 7 cut(s) 373, 616, 630, 720, 780, 1081, 1094
Bsp1720I GCTNAGC 2 cut(s) 570, 957
BspACI CCGC 2 cut(s) 729, 822
BspANI GGCC 1 cut(s) 817
BspCNI CTCAG 5 cut(s) 351, 562, 894, 949, 955
BspDI ATCGAT 1 cut(s) 452
BspMAI CTGCAG 1 cut(s) 538
BspQI GCTCTTC 1 cut(s) 18
BspTNI GGTCTC 1 cut(s) 1113
BsrDI GCAATG 2 cut(s) 833, 1294
BsrI ACTGG 3 cut(s) 140, 1002, 1145
BssECI CCNNGG 1 cut(s) 598
BssMI GATC 7 cut(s) 373, 616, 630, 720, 780, 1081, 1094
BssSI CACGAG 1 cut(s) 63
Bst2BI CACGAG 1 cut(s) 63
Bst2UI CCWGG 2 cut(s) 600, 854
Bst4CI ACNGT 2 cut(s) 664, 1270
Bst6I CTCTTC 2 cut(s) 18, 101
BstC8I GCNNGC 2 cut(s) 556, 729
BstDEI CTNAG 6 cut(s) 338, 570, 902, 957, 963, 1249
BstENI CCTNNNNNAGG 1 cut(s) 811
BstF5I GGATG 9 cut(s) 175, 304, 584, 841, 1060, 1186, 1190, 1224, 1229
BstHHI GCGC 1 cut(s) 560
BstKTI GATC 7 cut(s) 376, 619, 633, 723, 783, 1084, 1097
BstMAI GTCTC 3 cut(s) 324, 1113, 1278
BstMBI GATC 7 cut(s) 373, 616, 630, 720, 780, 1081, 1094
BstMWI GCNNNNNNNGC 3 cut(s) 557, 566, 978
BstNI CCWGG 2 cut(s) 600, 854
BstNSI RCATGY 1 cut(s) 547
BstSCI CCNGG 2 cut(s) 598, 852
BstSFI CTRYAG 1 cut(s) 534
BstSLI GKGCMC 1 cut(s) 1144
BstV1I GCAGC 3 cut(s) 315, 563, 1249
BstV2I GAAGAC 1 cut(s) 289
BstX2I RGATCY 3 cut(s) 373, 630, 720
BstXI CCANNNNNNTGG 1 cut(s) 356
BstYI RGATCY 3 cut(s) 373, 630, 720
Bsu15I ATCGAT 1 cut(s) 452
Bsu36I CCTNAGG 1 cut(s) 963
BsuRI GGCC 1 cut(s) 817
BsuTUI ATCGAT 1 cut(s) 452
BtsCI GGATG 9 cut(s) 175, 304, 584, 841, 1060, 1186, 1190, 1224, 1229
BtsIMutI CAGTG 2 cut(s) 465, 1009
Cac8I GCNNGC 2 cut(s) 556, 729
CfoI GCGC 1 cut(s) 560
Cfr13I GGNCC 1 cut(s) 1024
ClaI ATCGAT 1 cut(s) 452
Csp6I GTAC 3 cut(s) 158, 259, 648
CviAII CATG 6 cut(s) 332, 544, 784, 798, 910, 1028
CviQI GTAC 3 cut(s) 158, 259, 648
DdeI CTNAG 6 cut(s) 338, 570, 902, 957, 963, 1249
DpnI GATC 7 cut(s) 375, 618, 632, 722, 782, 1083, 1096
DpnII GATC 7 cut(s) 373, 616, 630, 720, 780, 1081, 1094
DrdI GACNNNNNNGTC 1 cut(s) 662
DseDI GACNNNNNNGTC 1 cut(s) 662
Eam1104I CTCTTC 2 cut(s) 18, 101
EarI CTCTTC 2 cut(s) 18, 101
Eco31I GGTCTC 1 cut(s) 1113
Eco32I GATATC 1 cut(s) 745
Eco47I GGWCC 1 cut(s) 1024
Eco57I CTGAAG 2 cut(s) 693, 917
Eco81I CCTNAGG 1 cut(s) 963
Eco88I CYCGRG 2 cut(s) 438, 929
EcoNI CCTNNNNNAGG 1 cut(s) 811
EcoRII CCWGG 2 cut(s) 598, 852
EcoRV GATATC 1 cut(s) 745
EcoT22I ATGCAT 1 cut(s) 1060
FaeI CATG 6 cut(s) 335, 547, 787, 801, 913, 1031
FaqI GGGAC 1 cut(s) 691
FatI CATG 6 cut(s) 331, 543, 783, 797, 909, 1027
FauI CCCGC 1 cut(s) 736
FauNDI CATATG 1 cut(s) 1044
FbaI TGATCA 1 cut(s) 780
Fnu4HI GCNGC 3 cut(s) 329, 552, 1238
FokI GGATG 9 cut(s) 162, 311, 571, 828, 1067, 1173, 1177, 1211, 1216
Fsp4HI GCNGC 3 cut(s) 329, 552, 1238
FspBI CTAG 1 cut(s) 566
GlaI GCGC 1 cut(s) 559
GluI GCNGC 3 cut(s) 329, 552, 1238
GsuI CTGGAG 2 cut(s) 157, 636
HaeIII GGCC 1 cut(s) 817
HhaI GCGC 1 cut(s) 560
Hin1II CATG 6 cut(s) 335, 547, 787, 801, 913, 1031
Hin6I GCGC 1 cut(s) 558
HinP1I GCGC 1 cut(s) 558
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HinfI GANTC 6 cut(s) 304, 336, 803, 830, 865, 884
HphI GGTGA 5 cut(s) 44, 335, 359, 409, 614
Hpy166II GTNNAC 2 cut(s) 541, 875
Hpy188I TCNGA 5 cut(s) 165, 295, 946, 1113, 1199
Hpy8I GTNNAC 2 cut(s) 541, 875
HpyAV CCTTC 3 cut(s) 668, 1164, 1291
HpyCH4III ACNGT 2 cut(s) 664, 1270
HpyCH4IV ACGT 3 cut(s) 408, 986, 1129
HpyCH4V TGCA 9 cut(s) 331, 514, 536, 579, 758, 787, 838, 1058, 1237
HpyF10VI GCNNNNNNNGC 3 cut(s) 557, 566, 978
HpyF3I CTNAG 6 cut(s) 338, 570, 902, 957, 963, 1249
HpySE526I ACGT 3 cut(s) 408, 986, 1129
Hsp92II CATG 6 cut(s) 335, 547, 787, 801, 913, 1031
HspAI GCGC 1 cut(s) 558
Ksp22I TGATCA 1 cut(s) 780
Kzo9I GATC 7 cut(s) 373, 616, 630, 720, 780, 1081, 1094
LguI GCTCTTC 1 cut(s) 18
Lsp1109I GCAGC 3 cut(s) 315, 563, 1249
LweI GCATC 4 cut(s) 444, 1045, 1104, 1195
MaeI CTAG 1 cut(s) 566
MaeII ACGT 3 cut(s) 408, 986, 1129
MaeIII GTNAC 4 cut(s) 141, 341, 397, 905
MalI GATC 7 cut(s) 375, 618, 632, 722, 782, 1083, 1096
MboI GATC 7 cut(s) 373, 616, 630, 720, 780, 1081, 1094
MboII GAAGA 6 cut(s) 35, 112, 118, 294, 616, 1091
MflI RGATCY 3 cut(s) 373, 630, 720
MhlI GDGCHC 2 cut(s) 499, 1144
MluCI AATT 9 cut(s) 15, 253, 388, 417, 620, 709, 938, 1134, 1179
MlyI GAGTC 1 cut(s) 330
Mph1103I ATGCAT 1 cut(s) 1060
MseI TTAA 4 cut(s) 153, 194, 414, 1303
MslI CAYNNNNRTG 1 cut(s) 354
MspA1I CMGCKG 1 cut(s) 554
MspR9I CCNGG 2 cut(s) 600, 854
MvaI CCWGG 2 cut(s) 600, 854
MwoI GCNNNNNNNGC 3 cut(s) 557, 566, 978
NdeI CATATG 1 cut(s) 1044
NdeII GATC 7 cut(s) 373, 616, 630, 720, 780, 1081, 1094
NlaIII CATG 6 cut(s) 335, 547, 787, 801, 913, 1031
NmuCI GTSAC 2 cut(s) 341, 397
NsiI ATGCAT 1 cut(s) 1060
NspI RCATGY 1 cut(s) 547
PaeR7I CTCGAG 2 cut(s) 438, 929
PciI ACATGT 1 cut(s) 543
PciSI GCTCTTC 1 cut(s) 18
PcsI WCGNNNNNNNCGW 2 cut(s) 490, 1090
PfeI GAWTC 5 cut(s) 304, 803, 830, 865, 884
PflFI GACNNNGTC 2 cut(s) 339, 1270
PflMI CCANNNNNTGG 1 cut(s) 486
PkrI GCNGC 3 cut(s) 330, 553, 1239
PleI GAGTC 1 cut(s) 330
PpsI GAGTC 1 cut(s) 330
PscI ACATGT 1 cut(s) 543
Psp6I CCWGG 2 cut(s) 598, 852
PspGI CCWGG 2 cut(s) 598, 852
PspPI GGNCC 1 cut(s) 1024
PspXI VCTCGAGB 1 cut(s) 929
PstI CTGCAG 1 cut(s) 538
PsuI RGATCY 3 cut(s) 373, 630, 720
PsyI GACNNNGTC 2 cut(s) 339, 1270
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 3 cut(s) 159, 260, 649
RsaNI GTAC 3 cut(s) 158, 259, 648
RseI CAYNNNNRTG 1 cut(s) 354
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 4 cut(s) 153, 194, 414, 1303
SatI GCNGC 3 cut(s) 329, 552, 1238
Sau3AI GATC 7 cut(s) 373, 616, 630, 720, 780, 1081, 1094
Sau96I GGNCC 1 cut(s) 1024
SchI GAGTC 1 cut(s) 330
ScrFI CCNGG 2 cut(s) 600, 854
SduI GDGCHC 2 cut(s) 499, 1144
SfaNI GCATC 4 cut(s) 444, 1045, 1104, 1195
SfcI CTRYAG 1 cut(s) 534
Sfr274I CTCGAG 2 cut(s) 438, 929
SinI GGWCC 1 cut(s) 1024
SlaI CTCGAG 2 cut(s) 438, 929
SmiMI CAYNNNNRTG 1 cut(s) 354
SmlI CTYRAG 3 cut(s) 438, 808, 929
SmoI CTYRAG 3 cut(s) 438, 808, 929
Sse9I AATT 9 cut(s) 15, 253, 388, 417, 620, 709, 938, 1134, 1179
SsiI CCGC 2 cut(s) 729, 822
SspMI CTAG 1 cut(s) 566
StyD4I CCNGG 2 cut(s) 598, 852
TaaI ACNGT 2 cut(s) 664, 1270
TaiI ACGT 3 cut(s) 411, 989, 1132
TaqI TCGA 7 cut(s) 439, 452, 493, 691, 930, 1017, 1258
TasI AATT 9 cut(s) 15, 253, 388, 417, 620, 709, 938, 1134, 1179
TfiI GAWTC 5 cut(s) 304, 803, 830, 865, 884
Tru1I TTAA 4 cut(s) 153, 194, 414, 1303
Tru9I TTAA 4 cut(s) 153, 194, 414, 1303
TscAI CASTG 2 cut(s) 472, 1009
TseFI GTSAC 2 cut(s) 341, 397
TseI GCWGC 3 cut(s) 328, 551, 1237
Tsp45I GTSAC 2 cut(s) 341, 397
TspDTI ATGAA 8 cut(s) 119, 260, 284, 573, 729, 786, 843, 1061
TspGWI ACGGA 1 cut(s) 1183
TspRI CASTG 2 cut(s) 472, 1009
Tth111I GACNNNGTC 2 cut(s) 339, 1270
Van91I CCANNNNNTGG 1 cut(s) 486
VpaK11BI GGWCC 1 cut(s) 1024
XagI CCTNNNNNAGG 1 cut(s) 811
XapI RAATTY 3 cut(s) 15, 388, 1134
XceI RCATGY 1 cut(s) 547
XhoI CTCGAG 2 cut(s) 438, 929
XspI CTAG 1 cut(s) 566
Zsp2I ATGCAT 1 cut(s) 1060
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.