Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004560

Physical Location & Seq

Genomic Coordinates Forward (+)

22544513 .. 22546017

Gene Structure 1505 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0157300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGGTTTCCGGTTGCCTGGAATTTCTAATGCCAAGAGAAGTCTTACTAGATCTCTATCTGCTTCAAAGAGCTTTGATATCCCAAAAGGCTACTTTGCAGTATATGTTGGGTTAAGCCAGATGAAGCGATTTGTGATTCCAGTCTCATATTTGAACGAGCCTCTTTTTCTGGACTTGTTGAGTCAATCTGAAGAAGAATTTGGATATAATCATCCAATGGGTGGCATCACAATCCCATGCATTGACACACCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

85

Amino Acids

9.43

Weight (kDa)

7.88

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	17 - 80	4e-20	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020
fragaria_vesca	FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351
malus_domestica	MD05G1169100.v1.1 MD10G1157400.v1.1
prunus_persica	Prupe.8G196200_v2.0.a1 Prupe.8G196200_v2.0.a1 Prupe.8G196200_v2.0.a1
pyrus_communis	pycom10g13590
rosa_chinensis	RchiOBHm_Chr6g0283731
rosa_laevigata	RLG00000012803
rosa_roxburghii	Rroxscaffold_7G00185230
rosa_rugosa	Rorug06G0157100 Rorug06G0157200 Rorug06G0157300
rosa_samantha	Rh6AG269300 Rh6BG271600 Rh6CG271600 Rh6DG265400
rosa_wichuraiana	Rw6G023290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	221
AcsI	RAATTY	2 cut(s)	21, 197
AcuI	CTGAAG	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	2 cut(s)	66, 154
AjnI	CCWGG	1 cut(s)	16
AjuI	GAANNNNNNNTTGG	2 cut(s)	183, 215
AluBI	AGCT	1 cut(s)	72
AluI	AGCT	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	148
ApoI	RAATTY	2 cut(s)	21, 197
BciT130I	CCWGG	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	148
BfaI	CTAG	2 cut(s)	48, 256
BglII	AGATCT	1 cut(s)	50
Bme1390I	CCNGG	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	1 cut(s)	234
BsaBI	GATNNNNATC	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	140
Bse8I	GATNNNNATC	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	211
BseJI	GATNNNNATC	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	10
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	140
BssMI	GATC	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	1 cut(s)	53
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	211
CviAII	CATG	1 cut(s)	237
CviJI	RGCY	4 cut(s)	72, 90, 117, 160
CviKI_1	RGCY	4 cut(s)	72, 90, 117, 160
DpnI	GATC	1 cut(s)	52
DpnII	GATC	1 cut(s)	50
Eco32I	GATATC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	16
EcoRV	GATATC	1 cut(s)	79
EcoT22I	ATGCAT	1 cut(s)	242
FaeI	CATG	1 cut(s)	240
FaiI	YATR	5 cut(s)	103, 105, 148, 207, 238
FatI	CATG	1 cut(s)	236
FokI	GGATG	1 cut(s)	198
FspBI	CTAG	2 cut(s)	48, 256
HapII	CCGG	1 cut(s)	10
Hin1II	CATG	1 cut(s)	240
HinfI	GANTC	2 cut(s)	136, 181
HpaII	CCGG	1 cut(s)	10
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	1 cut(s)	170
HpyCH4V	TGCA	2 cut(s)	98, 240
Hsp92II	CATG	1 cut(s)	240
Kzo9I	GATC	1 cut(s)	50
LpnPI	CCDG	6 cut(s)	3, 23, 30, 131, 153, 155
LweI	GCATC	1 cut(s)	234
MaeI	CTAG	2 cut(s)	48, 256
MalI	GATC	1 cut(s)	52
MboI	GATC	1 cut(s)	50
MboII	GAAGA	2 cut(s)	203, 206
MflI	RGATCY	1 cut(s)	50
MluCI	AATT	2 cut(s)	21, 197
MlyI	GAGTC	1 cut(s)	190
MnlI	CCTC	1 cut(s)	171
Mph1103I	ATGCAT	1 cut(s)	242
MseI	TTAA	1 cut(s)	113
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	18
NdeII	GATC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	240
NsiI	ATGCAT	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	136
PflMI	CCANNNNNTGG	1 cut(s)	221
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	113
Sau3AI	GATC	1 cut(s)	50
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	18
SetI	ASST	2 cut(s)	74, 253
SfaNI	GCATC	1 cut(s)	234
Sse9I	AATT	2 cut(s)	21, 197
SspMI	CTAG	2 cut(s)	48, 256
StyD4I	CCNGG	1 cut(s)	16
TasI	AATT	2 cut(s)	21, 197
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TspDTI	ATGAA	1 cut(s)	137
Van91I	CCANNNNNTGG	1 cut(s)	221
XapI	RAATTY	2 cut(s)	21, 197
XspI	CTAG	2 cut(s)	48, 256
Zsp2I	ATGCAT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.