Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004560

Physical Location & Seq

Genomic Coordinates Forward (+)

45696749 .. 45701579

Gene Structure 4831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG265400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGAGAGATATAAAATTTTGGAGGAACTTGGTGATGGCACTTGTGGTAGTGTATATAAGGCTCGTGATTGGAGAACAAATGAGATTGTTGCTGTCAAGAAGATGAAGAGAAAGTTCTTTTTCTGGGAAGAATACTGGAGATTGCGAGAGATTAAGGTCCTTCGCAAACTAAATCATCCAAATATTATAAAGTTAAAGGAGGTGGTTAGGGAAAACAACGAGGTGTTCCTCATTTTTGAGTACATGAACTATAATTTGTATGAAATAATGAAAGAACGACAAAGACCCTTTTCAGAGGATGAAATTAGGAGCTTTATGTCTCAACTGCTGGATGGGCTTAATCATATGCATAGAAGGGGATATTTTCACCGAGATCTAAAACCAGAGAATTTGCTGGTGACAAACGATATTCTTAAAGTTGCTGATTTTGGATTGGCTAGAGAAGTGTCATCAATGCCTCCTTATACTGAATATGTTTCCACACGCTGGTATCGAGCACCGGAAGTCCTGTTGCAGGCCAAATCATATACTCCTGCAGTTGACATGTGGGCAGCGGGTGCAATCCTAGCTGAACTTTTCACTTTGTCCCCTATTTTCCCTGGTGAAAGTGAAATAGATCAGCTGTACAAGATTTGCTGTGTACTTGGTACACCAGACTTGACAATCTTCCCTGAAGGGACAAATATATCTCGATTATTTAGCATTGTCAATTTTGAAAAGATCTTGCCTGCAAATCTCTCTGATATCATTCCAAATGCAAGCGCAGAGGCTATTGATTTGATAATGAAACTATGCTCATGGGACCCATCAAAGAGGCCAACTGCAGATGAAACATTACAACATCCCTTTTTCCATGTGGTTTGGATTCCTCGTTCACTGCGTGATCCACTTGACCTGAAGCTAAGTAACATAGGGGCAAAGCCAACACTTGAGTTGAAACTGTCGGACTTTGGTGCTGAACCTGAGGACTGCTTTCTTGGCTTGACGTTGGCTGTGAAGCCCAGTGTTCCAGACTTCGATGTGGTTCATGATGTGTCTCAGAATATGGAAGAGGATACATTATTTTGCTCTGGTTTGGAAGATCATTCAGGACGGTCCGTTTTTTGGTCTCTAATGCCTCCTGATCAAGGTGGAATATGTGCCCCAGTTGAGCCTTCGTTTTCTTTGTCATTCAGTTCAATACAACATCCATCAGTCAGAGTTCCACAATCAGCTGGGTTCTCCATGCCTTCTTTGCAGTCTAACATTGTAGATGGTCCATTATTGGCCATGTCTTCTCCCTTCCCGCAAAGTCATTGCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

434

Amino Acids

49.6

Weight (kDa)

5.41

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 284	2.5e-74	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	5 - 197	3.5e-36	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020
fragaria_vesca	FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351
malus_domestica	MD05G1169100.v1.1 MD10G1157400.v1.1
prunus_persica	Prupe.8G196200_v2.0.a1 Prupe.8G196200_v2.0.a1 Prupe.8G196200_v2.0.a1
pyrus_communis	pycom10g13590
rosa_chinensis	RchiOBHm_Chr6g0283731
rosa_laevigata	RLG00000012803
rosa_roxburghii	Rroxscaffold_7G00185230
rosa_rugosa	Rorug06G0157100 Rorug06G0157200 Rorug06G0157300
rosa_samantha	Rh6AG269300 Rh6BG271600 Rh6CG271600 Rh6DG265400
rosa_wichuraiana	Rw6G023290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	188
AccB7I	CCANNNNNTGG	1 cut(s)	486
AciI	CCGC	2 cut(s)	554, 1286
AclWI	GGATC	1 cut(s)	878
AcoI	YGGCCR	1 cut(s)	1266
AcsI	RAATTY	2 cut(s)	15, 388
AcuI	CTGAAG	2 cut(s)	693, 917
AdeI	CACNNNGTG	1 cut(s)	881
AfaI	GTAC	4 cut(s)	242, 626, 642, 649
AfiI	CCNNNNNNNGG	4 cut(s)	486, 514, 1104, 1127
AflIII	ACRYGT	1 cut(s)	543
AgsI	TTSAA	3 cut(s)	716, 937, 1179
AjnI	CCWGG	1 cut(s)	598
AloI	GAACNNNNNNTCC	2 cut(s)	856, 888
AluBI	AGCT	5 cut(s)	312, 569, 622, 901, 1214
AluI	AGCT	5 cut(s)	312, 569, 622, 901, 1214
Alw21I	GWGCWC	1 cut(s)	499
Alw26I	GTCTC	3 cut(s)	324, 1041, 1113
AlwI	GGATC	1 cut(s)	878
AoxI	GGCC	3 cut(s)	516, 815, 1266
ApeKI	GCWGC	1 cut(s)	551
ApoI	RAATTY	2 cut(s)	15, 388
AspLEI	GCGC	1 cut(s)	764
AspS9I	GGNCC	4 cut(s)	157, 802, 1095, 1256
AsuHPI	GGTGA	4 cut(s)	44, 359, 409, 614
AvaII	GGWCC	4 cut(s)	157, 802, 1095, 1256
AxyI	CCTNAGG	1 cut(s)	963
BaeGI	GKGCMC	1 cut(s)	1144
BaeI	ACNNNNGTAYC	2 cut(s)	473, 506
BalI	TGGCCA	1 cut(s)	1268
BauI	CACGAG	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	1266
Bbv12I	GWGCWC	1 cut(s)	499
BbvI	GCAGC	1 cut(s)	563
BccI	CCATC	5 cut(s)	29, 326, 814, 1198, 1247
BciT130I	CCWGG	1 cut(s)	600
BciVI	GTATCC	1 cut(s)	1048
BclI	TGATCA	1 cut(s)	1123
BcoDI	GTCTC	3 cut(s)	324, 1041, 1113
BfaI	CTAG	2 cut(s)	438, 566
BfmI	CTRYAG	2 cut(s)	534, 822
BfuI	GTATCC	1 cut(s)	1048
BglII	AGATCT	2 cut(s)	373, 720
BisI	GCNGC	1 cut(s)	552
BlsI	GCNGC	1 cut(s)	553
Bme1390I	CCNGG	1 cut(s)	600
Bme18I	GGWCC	4 cut(s)	157, 802, 1095, 1256
BmgT120I	GGNCC	4 cut(s)	157, 802, 1095, 1256
BmiI	GGNNCC	2 cut(s)	803, 804
BmrFI	CCNGG	1 cut(s)	600
BmrI	ACTGGG	2 cut(s)	996, 1139
BmuI	ACTGGG	2 cut(s)	996, 1139
BpiI	GAAGAC	1 cut(s)	1266
BpmI	CTGGAG	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	950
BsaI	GGTCTC	1 cut(s)	1113
BsaJI	CCNNGG	1 cut(s)	598
BsaWI	WCCGGW	1 cut(s)	499
Bsc4I	CCNNNNNNNGG	4 cut(s)	486, 514, 1104, 1127
Bse1I	ACTGG	3 cut(s)	140, 1002, 1145
Bse21I	CCTNAGG	1 cut(s)	963
Bse3DI	GCAATG	1 cut(s)	1294
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	1 cut(s)	598
BseGI	GGATG	5 cut(s)	175, 304, 337, 841, 1186
BseLI	CCNNNNNNNGG	4 cut(s)	486, 514, 1104, 1127
BseMI	GCAATG	1 cut(s)	1294
BseMII	CTCAG	2 cut(s)	954, 1052
BseNI	ACTGG	3 cut(s)	140, 1002, 1145
BseSI	GKGCMC	1 cut(s)	1144
BseXI	GCAGC	1 cut(s)	563
BseYI	CCCAGC	1 cut(s)	1214
BshFI	GGCC	3 cut(s)	518, 817, 1268
BsiHKAI	GWGCWC	1 cut(s)	499
BsiSI	CCGG	1 cut(s)	500
BslFI	GGGAC	3 cut(s)	571, 691, 815
BslI	CCNNNNNNNGG	4 cut(s)	486, 514, 1104, 1127
BsmAI	GTCTC	3 cut(s)	324, 1041, 1113
BsmFI	GGGAC	3 cut(s)	571, 691, 815
BsnI	GGCC	3 cut(s)	518, 817, 1268
Bso31I	GGTCTC	1 cut(s)	1113
Bsp1286I	GDGCHC	2 cut(s)	499, 1144
Bsp1407I	TGTACA	1 cut(s)	624
Bsp143I	GATC	6 cut(s)	373, 616, 720, 883, 1081, 1123
BspACI	CCGC	2 cut(s)	554, 1286
BspANI	GGCC	3 cut(s)	518, 817, 1268
BspCNI	CTCAG	2 cut(s)	955, 1051
BspHI	TCATGA	1 cut(s)	1027
BspLI	GGNNCC	2 cut(s)	803, 804
BspMAI	CTGCAG	2 cut(s)	538, 826
BspPI	GGATC	1 cut(s)	878
BspTNI	GGTCTC	1 cut(s)	1113
BsrDI	GCAATG	1 cut(s)	1294
BsrGI	TGTACA	1 cut(s)	624
BsrI	ACTGG	3 cut(s)	140, 1002, 1145
BssECI	CCNNGG	1 cut(s)	598
BssMI	GATC	6 cut(s)	373, 616, 720, 883, 1081, 1123
BssSI	CACGAG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	2 cut(s)	942, 1095
Bst6I	CTCTTC	2 cut(s)	101, 1044
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstAUI	TGTACA	1 cut(s)	624
BstC8I	GCNNGC	3 cut(s)	516, 729, 760
BstDEI	CTNAG	3 cut(s)	902, 963, 1038
BstENI	CCTNNNNNAGG	2 cut(s)	512, 1125
BstF5I	GGATG	5 cut(s)	175, 304, 337, 841, 1186
BstHHI	GCGC	1 cut(s)	764
BstKTI	GATC	6 cut(s)	376, 619, 723, 886, 1084, 1126
BstMAI	GTCTC	3 cut(s)	324, 1041, 1113
BstMBI	GATC	6 cut(s)	373, 616, 720, 883, 1081, 1123
BstMWI	GCNNNNNNNGC	5 cut(s)	334, 557, 566, 978, 1234
BstNI	CCWGG	1 cut(s)	600
BstNSI	RCATGY	1 cut(s)	547
BstSCI	CCNGG	1 cut(s)	598
BstSFI	CTRYAG	2 cut(s)	534, 822
BstSLI	GKGCMC	1 cut(s)	1144
BstV1I	GCAGC	1 cut(s)	563
BstV2I	GAAGAC	1 cut(s)	1266
BstX2I	RGATCY	2 cut(s)	373, 720
BstYI	RGATCY	2 cut(s)	373, 720
Bsu36I	CCTNAGG	1 cut(s)	963
BsuI	GTATCC	1 cut(s)	1048
BsuRI	GGCC	3 cut(s)	518, 817, 1268
BtsCI	GGATG	5 cut(s)	175, 304, 337, 841, 1186
BtsI	GCAGTG	1 cut(s)	875
BtsIMutI	CAGTG	3 cut(s)	875, 1009, 1300
Cac8I	GCNNGC	3 cut(s)	516, 729, 760
CciI	TCATGA	1 cut(s)	1027
CfoI	GCGC	1 cut(s)	764
Cfr13I	GGNCC	4 cut(s)	157, 802, 1095, 1256
CpoI	CGGWCCG	1 cut(s)	1095
Csp6I	GTAC	4 cut(s)	241, 625, 641, 648
CspI	CGGWCCG	1 cut(s)	1095
CviAII	CATG	7 cut(s)	244, 544, 798, 854, 1028, 1225, 1270
CviQI	GTAC	4 cut(s)	241, 625, 641, 648
DdeI	CTNAG	3 cut(s)	902, 963, 1038
DpnI	GATC	6 cut(s)	375, 618, 722, 885, 1083, 1125
DpnII	GATC	6 cut(s)	373, 616, 720, 883, 1081, 1123
DraIII	CACNNNGTG	1 cut(s)	881
EaeI	YGGCCR	1 cut(s)	1266
Eam1104I	CTCTTC	2 cut(s)	101, 1044
EarI	CTCTTC	2 cut(s)	101, 1044
Eco31I	GGTCTC	1 cut(s)	1113
Eco32I	GATATC	1 cut(s)	745
Eco47I	GGWCC	4 cut(s)	157, 802, 1095, 1256
Eco57I	CTGAAG	2 cut(s)	693, 917
Eco81I	CCTNAGG	1 cut(s)	963
EcoNI	CCTNNNNNAGG	2 cut(s)	512, 1125
EcoO109I	RGGNCCY	2 cut(s)	157, 802
EcoRII	CCWGG	1 cut(s)	598
EcoRV	GATATC	1 cut(s)	745
EcoT22I	ATGCAT	1 cut(s)	351
FaeI	CATG	7 cut(s)	247, 547, 801, 857, 1031, 1228, 1273
FaqI	GGGAC	3 cut(s)	571, 691, 815
FatI	CATG	7 cut(s)	243, 543, 797, 853, 1027, 1224, 1269
FauI	CCCGC	2 cut(s)	547, 1293
FauNDI	CATATG	1 cut(s)	345
FbaI	TGATCA	1 cut(s)	1123
Fnu4HI	GCNGC	1 cut(s)	552
FokI	GGATG	5 cut(s)	162, 311, 344, 828, 1173
Fsp4HI	GCNGC	1 cut(s)	552
FspBI	CTAG	2 cut(s)	438, 566
GlaI	GCGC	1 cut(s)	763
GluI	GCNGC	1 cut(s)	552
GsaI	CCCAGC	1 cut(s)	1218
GsuI	CTGGAG	1 cut(s)	157
HaeIII	GGCC	3 cut(s)	518, 817, 1268
HapII	CCGG	1 cut(s)	500
HhaI	GCGC	1 cut(s)	764
Hin1II	CATG	7 cut(s)	247, 547, 801, 857, 1031, 1228, 1273
Hin6I	GCGC	1 cut(s)	762
HinP1I	GCGC	1 cut(s)	762
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HinfI	GANTC	1 cut(s)	865
HpaII	CCGG	1 cut(s)	500
HphI	GGTGA	4 cut(s)	44, 359, 409, 614
Hpy166II	GTNNAC	4 cut(s)	541, 641, 650, 875
Hpy188I	TCNGA	5 cut(s)	295, 742, 946, 1041, 1199
Hpy188III	TCNNGA	7 cut(s)	65, 97, 690, 1010, 1028, 1089, 1121
Hpy8I	GTNNAC	4 cut(s)	541, 641, 650, 875
HpyAV	CCTTC	6 cut(s)	170, 348, 668, 1164, 1239, 1291
HpyCH4III	ACNGT	2 cut(s)	942, 1095
HpyCH4IV	ACGT	1 cut(s)	986
HpyCH4V	TGCA	8 cut(s)	349, 514, 536, 560, 731, 758, 824, 1237
HpyF10VI	GCNNNNNNNGC	5 cut(s)	334, 557, 566, 978, 1234
HpyF3I	CTNAG	3 cut(s)	902, 963, 1038
HpySE526I	ACGT	1 cut(s)	986
Hsp92II	CATG	7 cut(s)	247, 547, 801, 857, 1031, 1228, 1273
HspAI	GCGC	1 cut(s)	762
KflI	GGGWCCC	1 cut(s)	802
Ksp22I	TGATCA	1 cut(s)	1123
Kzo9I	GATC	6 cut(s)	373, 616, 720, 883, 1081, 1123
LmnI	GCTCC	1 cut(s)	309
Lsp1109I	GCAGC	1 cut(s)	563
MaeI	CTAG	2 cut(s)	438, 566
MaeII	ACGT	1 cut(s)	986
MaeIII	GTNAC	2 cut(s)	397, 905
MalI	GATC	6 cut(s)	375, 618, 722, 885, 1083, 1125
MboI	GATC	6 cut(s)	373, 616, 720, 883, 1081, 1123
MboII	GAAGA	7 cut(s)	112, 118, 140, 658, 1061, 1091, 1266
MflI	RGATCY	2 cut(s)	373, 720
MhlI	GDGCHC	2 cut(s)	499, 1144
MlsI	TGGCCA	1 cut(s)	1268
MluCI	AATT	5 cut(s)	15, 253, 303, 388, 709
MluNI	TGGCCA	1 cut(s)	1268
MmeI	TCCRAC	1 cut(s)	924
Mox20I	TGGCCA	1 cut(s)	1268
Mph1103I	ATGCAT	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	1268
MseI	TTAA	4 cut(s)	153, 194, 339, 414
Msp20I	TGGCCA	1 cut(s)	1268
MspA1I	CMGCKG	3 cut(s)	554, 622, 1214
MspI	CCGG	1 cut(s)	500
MspR9I	CCNGG	1 cut(s)	600
MvaI	CCWGG	1 cut(s)	600
MwoI	GCNNNNNNNGC	5 cut(s)	334, 557, 566, 978, 1234
NdeI	CATATG	1 cut(s)	345
NdeII	GATC	6 cut(s)	373, 616, 720, 883, 1081, 1123
NlaIII	CATG	7 cut(s)	247, 547, 801, 857, 1031, 1228, 1273
NlaIV	GGNNCC	2 cut(s)	803, 804
NmuCI	GTSAC	1 cut(s)	397
NsiI	ATGCAT	1 cut(s)	351
NspI	RCATGY	1 cut(s)	547
PagI	TCATGA	1 cut(s)	1027
PciI	ACATGT	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	2 cut(s)	490, 877
PfeI	GAWTC	1 cut(s)	865
PflMI	CCANNNNNTGG	1 cut(s)	486
PkrI	GCNGC	1 cut(s)	553
PpuMI	RGGWCCY	2 cut(s)	157, 802
PscI	ACATGT	1 cut(s)	543
PsiI	TTATAA	1 cut(s)	188
Psp5II	RGGWCCY	2 cut(s)	157, 802
Psp6I	CCWGG	1 cut(s)	598
PspFI	CCCAGC	1 cut(s)	1214
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	2 cut(s)	803, 804
PspPI	GGNCC	4 cut(s)	157, 802, 1095, 1256
PspPPI	RGGWCCY	2 cut(s)	157, 802
PstI	CTGCAG	2 cut(s)	538, 826
PsuI	RGATCY	2 cut(s)	373, 720
PvuII	CAGCTG	2 cut(s)	622, 1214
RsaI	GTAC	4 cut(s)	242, 626, 642, 649
RsaNI	GTAC	4 cut(s)	241, 625, 641, 648
Rsr2I	CGGWCCG	1 cut(s)	1095
RsrII	CGGWCCG	1 cut(s)	1095
SaqAI	TTAA	4 cut(s)	153, 194, 339, 414
SatI	GCNGC	1 cut(s)	552
Sau3AI	GATC	6 cut(s)	373, 616, 720, 883, 1081, 1123
Sau96I	GGNCC	4 cut(s)	157, 802, 1095, 1256
ScrFI	CCNGG	1 cut(s)	600
SduI	GDGCHC	2 cut(s)	499, 1144
SfcI	CTRYAG	2 cut(s)	534, 822
SinI	GGWCC	4 cut(s)	157, 802, 1095, 1256
SmlI	CTYRAG	1 cut(s)	929
SmoI	CTYRAG	1 cut(s)	929
Sse9I	AATT	5 cut(s)	15, 253, 303, 388, 709
SsiI	CCGC	2 cut(s)	554, 1286
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	2 cut(s)	438, 566
StyD4I	CCNGG	1 cut(s)	598
TaaI	ACNGT	2 cut(s)	942, 1095
TaiI	ACGT	1 cut(s)	989
TaqI	TCGA	3 cut(s)	493, 691, 1017
TasI	AATT	5 cut(s)	15, 253, 303, 388, 709
TatI	WGTACW	3 cut(s)	240, 624, 640
TfiI	GAWTC	1 cut(s)	865
Tru1I	TTAA	4 cut(s)	153, 194, 339, 414
Tru9I	TTAA	4 cut(s)	153, 194, 339, 414
TscAI	CASTG	2 cut(s)	882, 1009
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	1 cut(s)	551
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	8 cut(s)	119, 260, 276, 284, 315, 800, 843, 1016
TspGWI	ACGGA	1 cut(s)	1087
TspRI	CASTG	2 cut(s)	882, 1009
Van91I	CCANNNNNTGG	1 cut(s)	486
VpaK11BI	GGWCC	4 cut(s)	157, 802, 1095, 1256
XagI	CCTNNNNNAGG	2 cut(s)	512, 1125
XapI	RAATTY	2 cut(s)	15, 388
XceI	RCATGY	1 cut(s)	547
XspI	CTAG	2 cut(s)	438, 566
Zsp2I	ATGCAT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.