Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004560

Physical Location & Seq

Genomic Coordinates Forward (+)

22535952 .. 22537559

Gene Structure 1608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0157100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGAAGGCTCTTTCTGCTGGGAAGAGCTTAGATGTTCCGAAAGGCTACTTTTCAGTTTATGTTGGGGTGAGCCAGAAGAAGCGATTTGTGATTCCAATTGCATACTTGAACGAGCCTTTGTTCCTGGATTTGTTGAGTCAAGCTGGAGAAGAATTTGGATACGATCATCCCATGGGTGGTATCACAATCCCCTGCAGTGAACACACATTCCTTGATCTCACTTCTCGCTTAAGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

79

Amino Acids

8.69

Weight (kDa)

6.02

Isoelectric Point (pI)

25.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	7 - 76	3.1e-21	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020
fragaria_vesca	FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351
malus_domestica	MD05G1169100.v1.1 MD10G1157400.v1.1
prunus_persica	Prupe.8G196200_v2.0.a1 Prupe.8G196200_v2.0.a1 Prupe.8G196200_v2.0.a1
pyrus_communis	pycom10g13590
rosa_chinensis	RchiOBHm_Chr6g0283731
rosa_laevigata	RLG00000012803
rosa_roxburghii	Rroxscaffold_7G00185230
rosa_rugosa	Rorug06G0157100 Rorug06G0157200 Rorug06G0157300
rosa_samantha	Rh6AG269300 Rh6BG271600 Rh6CG271600 Rh6DG265400
rosa_wichuraiana	Rw6G023290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	176
AflII	CTTAAG	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	123
AloI	GAACNNNNNNTCC	2 cut(s)	192, 224
AluBI	AGCT	2 cut(s)	27, 143
AluI	AGCT	2 cut(s)	27, 143
ApoI	RAATTY	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	125
BciVI	GTATCC	1 cut(s)	152
BfmI	CTRYAG	1 cut(s)	193
BfrI	CTTAAG	1 cut(s)	229
BfuI	GTATCC	1 cut(s)	152
Bme1390I	CCNGG	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	125
BpmI	CTGGAG	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseYI	CCCAGC	1 cut(s)	17
BslI	CCNNNNNNNGG	1 cut(s)	176
Bsp143I	GATC	2 cut(s)	163, 214
Bsp19I	CCATGG	1 cut(s)	171
BspMAI	CTGCAG	1 cut(s)	197
BspQI	GCTCTTC	1 cut(s)	17
BspTI	CTTAAG	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	2 cut(s)	163, 214
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	17
BstAFI	CTTAAG	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	28
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	2 cut(s)	166, 217
BstMBI	GATC	2 cut(s)	163, 214
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	123
BstSFI	CTRYAG	1 cut(s)	193
BsuI	GTATCC	1 cut(s)	152
BtgI	CCRYGG	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	202
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	6 cut(s)	8, 27, 45, 72, 115, 143
CviKI_1	RGCY	6 cut(s)	8, 27, 45, 72, 115, 143
DdeI	CTNAG	1 cut(s)	28
DpnI	GATC	2 cut(s)	165, 216
DpnII	GATC	2 cut(s)	163, 214
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	1 cut(s)	175
FaiI	YATR	4 cut(s)	60, 103, 173, 238
FatI	CATG	1 cut(s)	171
FokI	GGATG	1 cut(s)	153
GsaI	CCCAGC	1 cut(s)	21
GsuI	CTGGAG	1 cut(s)	165
Hin1II	CATG	1 cut(s)	175
HinfI	GANTC	2 cut(s)	91, 136
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	1 cut(s)	39
Hpy8I	GTNNAC	1 cut(s)	200
HpyCH4V	TGCA	2 cut(s)	101, 195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	1 cut(s)	28
Hsp92II	CATG	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	163, 214
LguI	GCTCTTC	1 cut(s)	17
LpnPI	CCDG	6 cut(s)	3, 86, 110, 129, 137, 205
MalI	GATC	2 cut(s)	165, 216
MboI	GATC	2 cut(s)	163, 214
MboII	GAAGA	3 cut(s)	34, 88, 161
MfeI	CAATTG	1 cut(s)	96
MluCI	AATT	2 cut(s)	96, 152
MlyI	GAGTC	1 cut(s)	145
MseI	TTAA	1 cut(s)	230
MspCI	CTTAAG	1 cut(s)	229
MspR9I	CCNGG	1 cut(s)	125
MunI	CAATTG	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	14
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	2 cut(s)	163, 214
NlaIII	CATG	1 cut(s)	175
PciSI	GCTCTTC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	91
PfoI	TCCNGGA	1 cut(s)	123
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	123
PspFI	CCCAGC	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	123
PstI	CTGCAG	1 cut(s)	197
SapI	GCTCTTC	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	230
Sau3AI	GATC	2 cut(s)	163, 214
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	1 cut(s)	125
SetI	ASST	2 cut(s)	29, 145
SfcI	CTRYAG	1 cut(s)	193
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
Sse9I	AATT	2 cut(s)	96, 152
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	171
TasI	AATT	2 cut(s)	96, 152
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	202
Vha464I	CTTAAG	1 cut(s)	229
XapI	RAATTY	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.