Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004560

Physical Location & Seq

Genomic Coordinates Forward (+)

18793270 .. 18799251

Gene Structure 5982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G196200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGGAAAGATATAAAATTTTGGAGGAGCTTGGTGATGGCACTTGTGGTAGTGTATATAAGGCTCGTGATTGGAGAACAAATGAGATTGTTGCAGTCAAAAAGATGAAGAGGAAGTTCTTTTTCTGGGAGGAATACTGGAGATTACGAGAGATTAAGGTACTCCGTAAATTAAATCACCCCAATATCATAAAGTTGAAGGAGGTTGTCAGGGAAAACAATGAGGTGTTCCTCATTTTTGAGTACATGAACTATAATCTATACCAAGTAATGAAAGAACAAAGAAGACCCTTTTCAGAGGATGAGATTCGTAGCTTTATGTCTCAATTGCTGCATGGACTTAATCACCTCCATAGAAGTGGATATTTTCACCGAGATCTAAAACCAGAGAATTTGCTGGTGACAAATGACGTTCTTAAAATTGCTGACTTCGGATTGGCTAGAGAAGTATCATCGGTTCCTCCTTATACCGAATATGTTTCCACACGCTGGTATCGAGCACCAGAAGTCCTGTTACAGTCCAAATTATACACTCCTGCAGTTGACATGTGGGCAGCTGGCGCAATCCTAGCTGAGCTTTTCAATTTGTCCCCAATTTTCCCTGGTGAAAGTGAGATAGACCAATTGTTCAAGATATGCTGTGTGCTTGGTACTCCAGACTTGACTATCTTCGATGAAGGGACAAATGCCTCTCGATTATATGGCATTATTAATTATGAAAAGATCTTGCCTGCAAACCTCTCTGATATCATTCCAAGCGCAAGCCCAGAAGCTATTGATTTAATCCAACAACTATGTTCATGGGATCCATCAAGGAGGCCAGCTGCGGATGAATCATTACAACATCCCTTTTTCCATGTTGGCTGGGTTCCTCGTTCACTCCGTGATCCACTTGACCTGAAGCTAAGTATCATGGGAGCAAAGCCAACGCTTGAGTTGAAATTATCAGACTTTGGTGCTGAACCTGAGGACTGCTTTCTTGGCTTGACGCTGGCTGTGAAGCCCAGTGTTCCAGAATTCGATGTGGTTCATGATGTATCGCAGCATATAAAAGAGGATTCTTTATTTTGCTCTGGTTTGGAAGATCATTCAGGACGATCTGGGAAAATTCAGGATCTCTTTACTTGGTTACTGATTATTTTTCCCTTTTTACTGCAAATGAATCTAACCATAGTTTTTTGGTCTCTAATGCCTCCTGATCAAGGTGGAATCTGTGCCCCAGTAGAGCCTTCCTTTTCTTTATCATTCAGTTCAATTCAACATCCATCAGTCAGAGTTCCACAATCAGCTGGTTTCTCCATCCCATCATTGCAGCCTAACATCTTAGATGGTCCATTGTTGGCCATGTCTTCTTCCTTCCCACAAAGCCGTTGCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

459

Amino Acids

52.32

Weight (kDa)

5.56

Isoelectric Point (pI)

52.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020
fragaria_vesca	FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351
malus_domestica	MD05G1169100.v1.1 MD10G1157400.v1.1
prunus_persica	Prupe.8G196200_v2.0.a1 Prupe.8G196200_v2.0.a1 Prupe.8G196200_v2.0.a1
pyrus_communis	pycom10g13590
rosa_chinensis	RchiOBHm_Chr6g0283731
rosa_laevigata	RLG00000012803
rosa_roxburghii	Rroxscaffold_7G00185230
rosa_rugosa	Rorug06G0157100 Rorug06G0157200 Rorug06G0157300
rosa_samantha	Rh6AG269300 Rh6BG271600 Rh6CG271600 Rh6DG265400
rosa_wichuraiana	Rw6G023290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	486
AciI	CCGC	1 cut(s)	824
AclWI	GGATC	4 cut(s)	797, 810, 878, 1119
AcoI	YGGCCR	1 cut(s)	1338
AcsI	RAATTY	4 cut(s)	15, 388, 1013, 1104
AcuI	CTGAAG	1 cut(s)	917
AdeI	CACNNNGTG	1 cut(s)	881
AfaI	GTAC	3 cut(s)	159, 242, 649
AfiI	CCNNNNNNNGG	2 cut(s)	486, 1199
AflIII	ACRYGT	1 cut(s)	543
AgsI	TTSAA	6 cut(s)	196, 580, 628, 937, 1251, 1256
AjnI	CCWGG	1 cut(s)	598
AluBI	AGCT	9 cut(s)	28, 312, 554, 569, 574, 770, 821, 901, 1286
AluI	AGCT	9 cut(s)	28, 312, 554, 569, 574, 770, 821, 901, 1286
Alw21I	GWGCWC	1 cut(s)	499
Alw26I	GTCTC	2 cut(s)	324, 1185
AlwI	GGATC	4 cut(s)	797, 810, 878, 1119
AoxI	GGCC	2 cut(s)	815, 1338
ApeKI	GCWGC	5 cut(s)	328, 551, 821, 1039, 1309
ApoI	RAATTY	4 cut(s)	15, 388, 1013, 1104
AseI	ATTAAT	1 cut(s)	708
AspLEI	GCGC	2 cut(s)	560, 758
AspS9I	GGNCC	1 cut(s)	1328
AsuHPI	GGTGA	6 cut(s)	44, 167, 335, 359, 409, 614
AvaII	GGWCC	1 cut(s)	1328
AxyI	CCTNAGG	1 cut(s)	963
BaeGI	GKGCMC	1 cut(s)	1216
BaeI	ACNNNNGTAYC	2 cut(s)	473, 506
BalI	TGGCCA	1 cut(s)	1340
BamHI	GGATCC	1 cut(s)	802
BarI	GAAGNNNNNNTAC	2 cut(s)	495, 527
BauI	CACGAG	1 cut(s)	63
BbsI	GAAGAC	2 cut(s)	289, 1338
Bbv12I	GWGCWC	1 cut(s)	499
BbvI	GCAGC	5 cut(s)	315, 563, 808, 1051, 1321
BccI	CCATC	6 cut(s)	29, 814, 1270, 1304, 1309, 1319
BceAI	ACGGC	1 cut(s)	1350
BciT130I	CCWGG	1 cut(s)	600
BclI	TGATCA	1 cut(s)	1195
BcoDI	GTCTC	2 cut(s)	324, 1185
BfaI	CTAG	2 cut(s)	438, 566
BfmI	CTRYAG	1 cut(s)	534
BglII	AGATCT	2 cut(s)	373, 720
BisI	GCNGC	5 cut(s)	329, 552, 822, 1040, 1310
BlpI	GCTNAGC	1 cut(s)	570
BlsI	GCNGC	5 cut(s)	330, 553, 823, 1041, 1311
Bme1390I	CCNGG	1 cut(s)	600
Bme18I	GGWCC	1 cut(s)	1328
BmgT120I	GGNCC	1 cut(s)	1328
BmiI	GGNNCC	3 cut(s)	456, 804, 867
BmrFI	CCNGG	1 cut(s)	600
BmrI	ACTGGG	2 cut(s)	996, 1211
BmuI	ACTGGG	2 cut(s)	996, 1211
BpiI	GAAGAC	2 cut(s)	289, 1338
BpmI	CTGGAG	2 cut(s)	157, 636
Bpu1102I	GCTNAGC	1 cut(s)	570
BpuEI	CTTGAG	1 cut(s)	950
BsaI	GGTCTC	1 cut(s)	1185
BsaJI	CCNNGG	1 cut(s)	598
Bsc4I	CCNNNNNNNGG	2 cut(s)	486, 1199
Bse1I	ACTGG	3 cut(s)	140, 1002, 1217
Bse21I	CCTNAGG	1 cut(s)	963
Bse3DI	GCAATG	1 cut(s)	1304
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	1 cut(s)	598
BseGI	GGATG	5 cut(s)	304, 832, 841, 1258, 1296
BseLI	CCNNNNNNNGG	2 cut(s)	486, 1199
BseMI	GCAATG	1 cut(s)	1304
BseMII	CTCAG	2 cut(s)	561, 954
BseNI	ACTGG	3 cut(s)	140, 1002, 1217
BseRI	GAGGAG	1 cut(s)	38
BseSI	GKGCMC	1 cut(s)	1216
BseXI	GCAGC	5 cut(s)	315, 563, 808, 1051, 1321
BseYI	CCCAGC	1 cut(s)	861
BshFI	GGCC	2 cut(s)	817, 1340
BsiHKAI	GWGCWC	1 cut(s)	499
BslFI	GGGAC	2 cut(s)	571, 691
BslI	CCNNNNNNNGG	2 cut(s)	486, 1199
BsmAI	GTCTC	2 cut(s)	324, 1185
BsmFI	GGGAC	2 cut(s)	571, 691
BsnI	GGCC	2 cut(s)	817, 1340
Bso31I	GGTCTC	1 cut(s)	1185
Bsp1286I	GDGCHC	2 cut(s)	499, 1216
Bsp143I	GATC	8 cut(s)	373, 720, 802, 883, 1081, 1094, 1111, 1195
Bsp1720I	GCTNAGC	1 cut(s)	570
BspACI	CCGC	1 cut(s)	824
BspANI	GGCC	2 cut(s)	817, 1340
BspCNI	CTCAG	2 cut(s)	562, 955
BspHI	TCATGA	1 cut(s)	1027
BspLI	GGNNCC	3 cut(s)	456, 804, 867
BspMAI	CTGCAG	1 cut(s)	538
BspPI	GGATC	4 cut(s)	797, 810, 878, 1119
BspTNI	GGTCTC	1 cut(s)	1185
BsrDI	GCAATG	1 cut(s)	1304
BsrI	ACTGG	3 cut(s)	140, 1002, 1217
BssECI	CCNNGG	1 cut(s)	598
BssMI	GATC	8 cut(s)	373, 720, 802, 883, 1081, 1094, 1111, 1195
BssSI	CACGAG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	1 cut(s)	516
Bst6I	CTCTTC	1 cut(s)	101
BstC8I	GCNNGC	5 cut(s)	556, 729, 760, 819, 990
BstDEI	CTNAG	4 cut(s)	570, 902, 963, 1321
BstENI	CCTNNNNNAGG	1 cut(s)	1197
BstF5I	GGATG	5 cut(s)	304, 832, 841, 1258, 1296
BstHHI	GCGC	2 cut(s)	560, 758
BstKTI	GATC	8 cut(s)	376, 723, 805, 886, 1084, 1097, 1114, 1198
BstMAI	GTCTC	2 cut(s)	324, 1185
BstMBI	GATC	8 cut(s)	373, 720, 802, 883, 1081, 1094, 1111, 1195
BstMWI	GCNNNNNNNGC	3 cut(s)	557, 566, 978
BstNI	CCWGG	1 cut(s)	600
BstNSI	RCATGY	1 cut(s)	547
BstSCI	CCNGG	1 cut(s)	598
BstSFI	CTRYAG	1 cut(s)	534
BstSLI	GKGCMC	1 cut(s)	1216
BstV1I	GCAGC	5 cut(s)	315, 563, 808, 1051, 1321
BstV2I	GAAGAC	2 cut(s)	289, 1338
BstX2I	RGATCY	4 cut(s)	373, 720, 802, 1111
BstXI	CCANNNNNNTGG	1 cut(s)	356
BstYI	RGATCY	4 cut(s)	373, 720, 802, 1111
Bsu36I	CCTNAGG	1 cut(s)	963
BsuRI	GGCC	2 cut(s)	817, 1340
BtsCI	GGATG	5 cut(s)	304, 832, 841, 1258, 1296
BtsIMutI	CAGTG	1 cut(s)	1009
Cac8I	GCNNGC	5 cut(s)	556, 729, 760, 819, 990
CciI	TCATGA	1 cut(s)	1027
CfoI	GCGC	2 cut(s)	560, 758
Cfr13I	GGNCC	1 cut(s)	1328
CseI	GACGC	1 cut(s)	994
Csp6I	GTAC	3 cut(s)	158, 241, 648
CviAII	CATG	8 cut(s)	244, 332, 544, 798, 854, 910, 1028, 1342
CviQI	GTAC	3 cut(s)	158, 241, 648
DdeI	CTNAG	4 cut(s)	570, 902, 963, 1321
DpnI	GATC	8 cut(s)	375, 722, 804, 885, 1083, 1096, 1113, 1197
DpnII	GATC	8 cut(s)	373, 720, 802, 883, 1081, 1094, 1111, 1195
DraIII	CACNNNGTG	1 cut(s)	881
EaeI	YGGCCR	1 cut(s)	1338
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Eco31I	GGTCTC	1 cut(s)	1185
Eco32I	GATATC	1 cut(s)	745
Eco47I	GGWCC	1 cut(s)	1328
Eco57I	CTGAAG	1 cut(s)	917
Eco81I	CCTNAGG	1 cut(s)	963
EcoNI	CCTNNNNNAGG	1 cut(s)	1197
EcoRI	GAATTC	1 cut(s)	1013
EcoRII	CCWGG	1 cut(s)	598
EcoRV	GATATC	1 cut(s)	745
FaeI	CATG	8 cut(s)	247, 335, 547, 801, 857, 913, 1031, 1345
FaqI	GGGAC	2 cut(s)	571, 691
FatI	CATG	8 cut(s)	243, 331, 543, 797, 853, 909, 1027, 1341
FbaI	TGATCA	1 cut(s)	1195
Fnu4HI	GCNGC	5 cut(s)	329, 552, 822, 1040, 1310
FokI	GGATG	5 cut(s)	311, 828, 839, 1245, 1283
Fsp4HI	GCNGC	5 cut(s)	329, 552, 822, 1040, 1310
FspBI	CTAG	2 cut(s)	438, 566
GlaI	GCGC	2 cut(s)	559, 757
GluI	GCNGC	5 cut(s)	329, 552, 822, 1040, 1310
GsaI	CCCAGC	1 cut(s)	865
GsuI	CTGGAG	2 cut(s)	157, 636
HaeIII	GGCC	2 cut(s)	817, 1340
HgaI	GACGC	1 cut(s)	994
HhaI	GCGC	2 cut(s)	560, 758
Hin1II	CATG	8 cut(s)	247, 335, 547, 801, 857, 913, 1031, 1345
Hin6I	GCGC	2 cut(s)	558, 756
HinP1I	GCGC	2 cut(s)	558, 756
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HinfI	GANTC	5 cut(s)	304, 830, 1055, 1159, 1206
HphI	GGTGA	6 cut(s)	44, 167, 335, 359, 409, 614
Hpy166II	GTNNAC	2 cut(s)	541, 875
Hpy188I	TCNGA	6 cut(s)	295, 431, 742, 946, 1271, 1376
Hpy188III	TCNNGA	9 cut(s)	65, 628, 653, 690, 1010, 1028, 1089, 1109, 1193
Hpy8I	GTNNAC	2 cut(s)	541, 875
HpyAV	CCTTC	4 cut(s)	190, 668, 1236, 1363
HpyCH4III	ACNGT	1 cut(s)	516
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	6 cut(s)	92, 331, 536, 731, 1153, 1309
HpyF10VI	GCNNNNNNNGC	3 cut(s)	557, 566, 978
HpyF3I	CTNAG	4 cut(s)	570, 902, 963, 1321
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	8 cut(s)	247, 335, 547, 801, 857, 913, 1031, 1345
HspAI	GCGC	2 cut(s)	558, 756
Ksp22I	TGATCA	1 cut(s)	1195
Kzo9I	GATC	8 cut(s)	373, 720, 802, 883, 1081, 1094, 1111, 1195
LmnI	GCTCC	2 cut(s)	25, 914
Lsp1109I	GCAGC	5 cut(s)	315, 563, 808, 1051, 1321
MaeI	CTAG	2 cut(s)	438, 566
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	3 cut(s)	397, 510, 1125
MalI	GATC	8 cut(s)	375, 722, 804, 885, 1083, 1096, 1113, 1197
MboI	GATC	8 cut(s)	373, 720, 802, 883, 1081, 1094, 1111, 1195
MboII	GAAGA	6 cut(s)	118, 294, 658, 1091, 1338, 1341
MfeI	CAATTG	2 cut(s)	323, 620
MflI	RGATCY	4 cut(s)	373, 720, 802, 1111
MhlI	GDGCHC	2 cut(s)	499, 1216
MlsI	TGGCCA	1 cut(s)	1340
MluNI	TGGCCA	1 cut(s)	1340
MmeI	TCCRAC	1 cut(s)	808
Mox20I	TGGCCA	1 cut(s)	1340
MscI	TGGCCA	1 cut(s)	1340
MseI	TTAA	6 cut(s)	153, 170, 339, 414, 708, 779
MslI	CAYNNNNRTG	1 cut(s)	354
Msp20I	TGGCCA	1 cut(s)	1340
MspA1I	CMGCKG	3 cut(s)	554, 821, 1286
MspR9I	CCNGG	1 cut(s)	600
MunI	CAATTG	2 cut(s)	323, 620
MvaI	CCWGG	1 cut(s)	600
MwoI	GCNNNNNNNGC	3 cut(s)	557, 566, 978
NdeII	GATC	8 cut(s)	373, 720, 802, 883, 1081, 1094, 1111, 1195
NlaIII	CATG	8 cut(s)	247, 335, 547, 801, 857, 913, 1031, 1345
NlaIV	GGNNCC	3 cut(s)	456, 804, 867
NmuCI	GTSAC	1 cut(s)	397
NspI	RCATGY	1 cut(s)	547
PagI	TCATGA	1 cut(s)	1027
PciI	ACATGT	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	2 cut(s)	490, 877
PfeI	GAWTC	5 cut(s)	304, 830, 1055, 1159, 1206
PflMI	CCANNNNNTGG	1 cut(s)	486
PkrI	GCNGC	5 cut(s)	330, 553, 823, 1041, 1311
PscI	ACATGT	1 cut(s)	543
PshBI	ATTAAT	1 cut(s)	708
Psp6I	CCWGG	1 cut(s)	598
PspFI	CCCAGC	1 cut(s)	861
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	3 cut(s)	456, 804, 867
PspPI	GGNCC	1 cut(s)	1328
PsrI	GAACNNNNNNTAC	2 cut(s)	438, 470
PstI	CTGCAG	1 cut(s)	538
PsuI	RGATCY	4 cut(s)	373, 720, 802, 1111
PvuII	CAGCTG	3 cut(s)	554, 821, 1286
RsaI	GTAC	3 cut(s)	159, 242, 649
RsaNI	GTAC	3 cut(s)	158, 241, 648
RseI	CAYNNNNRTG	1 cut(s)	354
SaqAI	TTAA	6 cut(s)	153, 170, 339, 414, 708, 779
SatI	GCNGC	5 cut(s)	329, 552, 822, 1040, 1310
Sau3AI	GATC	8 cut(s)	373, 720, 802, 883, 1081, 1094, 1111, 1195
Sau96I	GGNCC	1 cut(s)	1328
ScrFI	CCNGG	1 cut(s)	600
SduI	GDGCHC	2 cut(s)	499, 1216
SfcI	CTRYAG	1 cut(s)	534
SinI	GGWCC	1 cut(s)	1328
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	929
SmoI	CTYRAG	1 cut(s)	929
SsiI	CCGC	1 cut(s)	824
SspMI	CTAG	2 cut(s)	438, 566
StyD4I	CCNGG	1 cut(s)	598
TaaI	ACNGT	1 cut(s)	516
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	4 cut(s)	493, 669, 691, 1017
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	5 cut(s)	304, 830, 1055, 1159, 1206
Tru1I	TTAA	6 cut(s)	153, 170, 339, 414, 708, 779
Tru9I	TTAA	6 cut(s)	153, 170, 339, 414, 708, 779
TscAI	CASTG	1 cut(s)	1009
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	5 cut(s)	328, 551, 821, 1039, 1309
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	9 cut(s)	119, 260, 284, 687, 729, 786, 843, 1016, 1172
TspGWI	ACGGA	2 cut(s)	152, 869
TspRI	CASTG	1 cut(s)	1009
Van91I	CCANNNNNTGG	1 cut(s)	486
VpaK11BI	GGWCC	1 cut(s)	1328
VspI	ATTAAT	1 cut(s)	708
XagI	CCTNNNNNAGG	1 cut(s)	1197
XapI	RAATTY	4 cut(s)	15, 388, 1013, 1104
XceI	RCATGY	1 cut(s)	547
XspI	CTAG	2 cut(s)	438, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.