Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004560

Physical Location & Seq

Genomic Coordinates Reverse (-)

22543628 .. 22543909

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0157200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGCATGCTAAGCAGATTCTCCGGCGAGGAAGTTTGTTGGCTTGTAAAGCAGATTTAATACATGCTGGTGTTCCAAAAGGCTTCTTACCGGTGTATGTGGGAGAATGTAGTGAAAAGAAGAGATACATGGTTCCAGTTTCTGTCTTGAGTCAGCCATCATTTCAAGAGTTGCTGAGTAAGGCAGAGGAAGAATATGGATTCGACCATCCAATGGGTGGACTCACAATTCCTTGCCGAGAAGAAACCTTCATTGATCTCACTTCTCGCTTGAAGGGGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

93

Amino Acids

10.36

Weight (kDa)

7.74

Isoelectric Point (pI)

74.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	14 - 89	3e-21	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020
fragaria_vesca	FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351
malus_domestica	MD05G1169100.v1.1 MD10G1157400.v1.1
prunus_persica	Prupe.8G196200_v2.0.a1 Prupe.8G196200_v2.0.a1 Prupe.8G196200_v2.0.a1
pyrus_communis	pycom10g13590
rosa_chinensis	RchiOBHm_Chr6g0283731
rosa_laevigata	RLG00000012803
rosa_roxburghii	Rroxscaffold_7G00185230
rosa_rugosa	Rorug06G0157100 Rorug06G0157200 Rorug06G0157300
rosa_samantha	Rh6AG269300 Rh6BG271600 Rh6CG271600 Rh6DG265400
rosa_wichuraiana	Rw6G023290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	211, 215
AfiI	CCNNNNNNNGG	2 cut(s)	211, 215
AgeI	ACCGGT	1 cut(s)	88
AgsI	TTSAA	2 cut(s)	164, 271
AlwNI	CAGNNNCTG	1 cut(s)	140
AsiGI	ACCGGT	1 cut(s)	88
BccI	CCATC	2 cut(s)	163, 213
BlpI	GCTNAGC	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	132
Bpu1102I	GCTNAGC	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 215
Bse118I	RCCGGY	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	2 cut(s)	211, 215
BseMII	CTCAG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	134
BshTI	ACCGGT	1 cut(s)	88
BsiSI	CCGG	2 cut(s)	22, 89
BslI	CCNNNNNNNGG	2 cut(s)	211, 215
Bsp143I	GATC	1 cut(s)	253
Bsp1720I	GCTNAGC	1 cut(s)	9
BspCNI	CTCAG	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	88
BssMI	GATC	1 cut(s)	253
Bst6I	CTCTTC	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	9, 173
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 47
BstNSI	RCATGY	2 cut(s)	8, 65
BtsCI	GGATG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	88
CspAI	ACCGGT	1 cut(s)	88
CviAII	CATG	3 cut(s)	5, 62, 127
CviJI	RGCY	4 cut(s)	41, 81, 154, 277
CviKI_1	RGCY	4 cut(s)	41, 81, 154, 277
DdeI	CTNAG	2 cut(s)	9, 173
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	3 cut(s)	8, 65, 130
FaiI	YATR	5 cut(s)	6, 63, 96, 128, 195
FatI	CATG	3 cut(s)	4, 61, 126
FokI	GGATG	1 cut(s)	192
HapII	CCGG	2 cut(s)	22, 89
Hin1II	CATG	3 cut(s)	8, 65, 130
HinfI	GANTC	4 cut(s)	16, 148, 198, 219
HpaII	CCGG	2 cut(s)	22, 89
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188III	TCNNGA	2 cut(s)	145, 164
Hpy8I	GTNNAC	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	256, 265
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 47
HpyF3I	CTNAG	2 cut(s)	9, 173
Hsp92II	CATG	3 cut(s)	8, 65, 130
Kzo9I	GATC	1 cut(s)	253
LpnPI	CCDG	4 cut(s)	35, 51, 102, 147
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	3 cut(s)	130, 200, 251
MluCI	AATT	1 cut(s)	225
MlyI	GAGTC	2 cut(s)	157, 213
MnlI	CCTC	2 cut(s)	20, 178
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	56
MslI	CAYNNNNRTG	1 cut(s)	66
MspI	CCGG	2 cut(s)	22, 89
MwoI	GCNNNNNNNGC	2 cut(s)	10, 47
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	3 cut(s)	8, 65, 130
NlaIV	GGNNCC	1 cut(s)	132
NmeAIII	GCCGAG	1 cut(s)	260
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 65
PaeI	GCATGC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	16, 198
PflMI	CCANNNNNTGG	2 cut(s)	211, 215
PinAI	ACCGGT	1 cut(s)	88
PleI	GAGTC	2 cut(s)	156, 213
PpsI	GAGTC	2 cut(s)	156, 213
PspN4I	GGNNCC	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	56
Sau3AI	GATC	1 cut(s)	253
SchI	GAGTC	2 cut(s)	157, 213
SetI	ASST	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	201
TasI	AATT	1 cut(s)	225
TfiI	GAWTC	2 cut(s)	16, 198
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	238
Van91I	CCANNNNNTGG	2 cut(s)	211, 215
XceI	RCATGY	2 cut(s)	8, 65
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.