Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004560

Physical Location & Seq

Genomic Coordinates Forward (+)

45590999 .. 45595889

Gene Structure 4891 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G023290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGAGAGATATAAAATTTTGGAGGAACTTGGTGATGGCACTTGTGGTAGTGTATATAAGGCTCGTGATTGGAGATCAAATGAGATTGTTGCTGTCAAGAAGATGAAGAGAAAGTTCTTTTTCTGGGAAGAATACTGGAGATTGCGAGAGATTAAGGTCCTTCGCAAACTAAATCATCCAAATATTATAAAGTTAAAGGAGAACTATAATTTGTATGAAATAATGAAAGAACGACAAAGACCCTTTTCAGAGGATGAAATTAGGAGCTTTATGTCTCAACTGCTGGATGGGCTTAATCATATGCATAGAAGGGGATATTTTCACCGAGATCTAAAACCAGAGAATTTACTGGTGACAAACGATATTCTTAAAGTTGCTGATTTTGGATTGGCTAGAGAAGTGTCATCAATGCCTCCATATACTGAATATGTTTCCACACGCTGGTATCGAGCACCGGAAGTCCTGTTGCAGGCCAAATCATATTCTCCTGCAGTTGACATGTGGGCAGCGGGTGCAATCCTAGCTGAACTTTTCACTTTGTCCCCTATTTTCCCTGGTGAAAGTGAAATAGATCAGCTGTACAAGATTTGCTGTGTACTTGGTACACCAGACTTGACAATCTTCCCTGAAGGGACAAATATATCTCGATTATTTAGCATTGTCAATTTTGAAAAGATCTTGCCTGCAAATCTCTCTGATATCATTCCAAATGCAAGCGCAGAGGCTATTGATTTGATAATGAAACTATGCTCATGGGACCCATCAAAGAGACCAACTGCAGATGAAACATTACAACATCCCTTTTTCCATGTGGTTTGGATTCCTCGTTCACTGCGTGATCCACTTGACCTGAAGCTAAGTAACATAGGGGCAAAGCCAACACTTGAGTTGAAACTGTCGGACTTTGGTGCTGAACCTGAGGACTGCTTTCTTGGCTTGACGTTGGCTGTGAAGCCCAGTGTTCCAGACTTCGATGTGGTTCATGATGTGTCTCAGAATATGGAAGAGGATACATTATTTTGCTCTGGTTTGGAAGATCATTCAGGACGGTCCGTTTTTTGGTCTCTAATGCCTCCTGATCAAGGTGGAATATGTGGCCCAGTTGAGCCTTCGTTTTCTTTGTCATTCAGTTCAATACAACATCCATCAGTCAGAGTTCCACAATCAGCTGGGTTCTCCATGCCTTCTTTGCAGTCTAACATTGTAGATGGTCCATTATTGGCCATGTCTTCTCCCTTCCCGCAAAGTCATTGCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

419

Amino Acids

47.68

Weight (kDa)

5.55

Isoelectric Point (pI)

55.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 269	8.3e-63	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	5 - 182	6.3e-25	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020
fragaria_vesca	FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351
malus_domestica	MD05G1169100.v1.1 MD10G1157400.v1.1
prunus_persica	Prupe.8G196200_v2.0.a1 Prupe.8G196200_v2.0.a1 Prupe.8G196200_v2.0.a1
pyrus_communis	pycom10g13590
rosa_chinensis	RchiOBHm_Chr6g0283731
rosa_laevigata	RLG00000012803
rosa_roxburghii	Rroxscaffold_7G00185230
rosa_rugosa	Rorug06G0157100 Rorug06G0157200 Rorug06G0157300
rosa_samantha	Rh6AG269300 Rh6BG271600 Rh6CG271600 Rh6DG265400
rosa_wichuraiana	Rw6G023290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	188
AccB7I	CCANNNNNTGG	1 cut(s)	441
AciI	CCGC	2 cut(s)	509, 1241
AclWI	GGATC	1 cut(s)	833
AcoI	YGGCCR	1 cut(s)	1221
AcsI	RAATTY	2 cut(s)	15, 343
AcuI	CTGAAG	2 cut(s)	648, 872
AdeI	CACNNNGTG	1 cut(s)	836
AfaI	GTAC	3 cut(s)	581, 597, 604
AfiI	CCNNNNNNNGG	4 cut(s)	441, 469, 1059, 1082
AflIII	ACRYGT	1 cut(s)	498
AgsI	TTSAA	3 cut(s)	671, 892, 1134
AjnI	CCWGG	1 cut(s)	553
AloI	GAACNNNNNNTCC	2 cut(s)	811, 843
AluBI	AGCT	5 cut(s)	267, 524, 577, 856, 1169
AluI	AGCT	5 cut(s)	267, 524, 577, 856, 1169
Alw21I	GWGCWC	1 cut(s)	454
Alw26I	GTCTC	4 cut(s)	279, 763, 996, 1068
AlwI	GGATC	1 cut(s)	833
AoxI	GGCC	3 cut(s)	471, 1096, 1221
ApeKI	GCWGC	1 cut(s)	506
ApoI	RAATTY	2 cut(s)	15, 343
AspLEI	GCGC	1 cut(s)	719
AspS9I	GGNCC	5 cut(s)	157, 757, 1050, 1097, 1211
AsuHPI	GGTGA	4 cut(s)	44, 314, 364, 569
AvaII	GGWCC	4 cut(s)	157, 757, 1050, 1211
AxyI	CCTNAGG	1 cut(s)	918
BaeI	ACNNNNGTAYC	2 cut(s)	428, 461
BalI	TGGCCA	1 cut(s)	1223
BauI	CACGAG	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	1221
Bbv12I	GWGCWC	1 cut(s)	454
BbvI	GCAGC	1 cut(s)	518
BccI	CCATC	5 cut(s)	29, 281, 769, 1153, 1202
BciT130I	CCWGG	1 cut(s)	555
BciVI	GTATCC	1 cut(s)	1003
BclI	TGATCA	1 cut(s)	1078
BcoDI	GTCTC	4 cut(s)	279, 763, 996, 1068
BfaI	CTAG	2 cut(s)	393, 521
BfmI	CTRYAG	2 cut(s)	489, 777
BfuI	GTATCC	1 cut(s)	1003
BglII	AGATCT	2 cut(s)	328, 675
BisI	GCNGC	1 cut(s)	507
BlsI	GCNGC	1 cut(s)	508
Bme1390I	CCNGG	1 cut(s)	555
Bme18I	GGWCC	4 cut(s)	157, 757, 1050, 1211
BmgT120I	GGNCC	5 cut(s)	157, 757, 1050, 1097, 1211
BmiI	GGNNCC	2 cut(s)	758, 759
BmrFI	CCNGG	1 cut(s)	555
BmrI	ACTGGG	2 cut(s)	951, 1094
BmuI	ACTGGG	2 cut(s)	951, 1094
BpiI	GAAGAC	1 cut(s)	1221
BpmI	CTGGAG	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	905
BsaI	GGTCTC	2 cut(s)	763, 1068
BsaJI	CCNNGG	1 cut(s)	553
BsaWI	WCCGGW	1 cut(s)	454
Bsc4I	CCNNNNNNNGG	4 cut(s)	441, 469, 1059, 1082
Bse1I	ACTGG	4 cut(s)	140, 354, 957, 1100
Bse21I	CCTNAGG	1 cut(s)	918
Bse3DI	GCAATG	1 cut(s)	1249
BseBI	CCWGG	1 cut(s)	555
BseDI	CCNNGG	1 cut(s)	553
BseGI	GGATG	5 cut(s)	175, 259, 292, 796, 1141
BseLI	CCNNNNNNNGG	4 cut(s)	441, 469, 1059, 1082
BseMI	GCAATG	1 cut(s)	1249
BseMII	CTCAG	2 cut(s)	909, 1007
BseNI	ACTGG	4 cut(s)	140, 354, 957, 1100
BseXI	GCAGC	1 cut(s)	518
BseYI	CCCAGC	1 cut(s)	1169
BshFI	GGCC	3 cut(s)	473, 1098, 1223
BsiHKAI	GWGCWC	1 cut(s)	454
BsiSI	CCGG	1 cut(s)	455
BslFI	GGGAC	3 cut(s)	526, 646, 770
BslI	CCNNNNNNNGG	4 cut(s)	441, 469, 1059, 1082
BsmAI	GTCTC	4 cut(s)	279, 763, 996, 1068
BsmFI	GGGAC	3 cut(s)	526, 646, 770
BsnI	GGCC	3 cut(s)	473, 1098, 1223
Bso31I	GGTCTC	2 cut(s)	763, 1068
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	7 cut(s)	74, 328, 571, 675, 838, 1036, 1078
BspACI	CCGC	2 cut(s)	509, 1241
BspANI	GGCC	3 cut(s)	473, 1098, 1223
BspCNI	CTCAG	2 cut(s)	910, 1006
BspHI	TCATGA	1 cut(s)	982
BspLI	GGNNCC	2 cut(s)	758, 759
BspMAI	CTGCAG	2 cut(s)	493, 781
BspPI	GGATC	1 cut(s)	833
BspTNI	GGTCTC	2 cut(s)	763, 1068
BsrDI	GCAATG	1 cut(s)	1249
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	4 cut(s)	140, 354, 957, 1100
BssECI	CCNNGG	1 cut(s)	553
BssMI	GATC	7 cut(s)	74, 328, 571, 675, 838, 1036, 1078
BssSI	CACGAG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	555
Bst4CI	ACNGT	2 cut(s)	897, 1050
Bst6I	CTCTTC	2 cut(s)	101, 999
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstAUI	TGTACA	1 cut(s)	579
BstC8I	GCNNGC	3 cut(s)	471, 684, 715
BstDEI	CTNAG	3 cut(s)	857, 918, 993
BstENI	CCTNNNNNAGG	2 cut(s)	467, 1080
BstF5I	GGATG	5 cut(s)	175, 259, 292, 796, 1141
BstHHI	GCGC	1 cut(s)	719
BstKTI	GATC	7 cut(s)	77, 331, 574, 678, 841, 1039, 1081
BstMAI	GTCTC	4 cut(s)	279, 763, 996, 1068
BstMBI	GATC	7 cut(s)	74, 328, 571, 675, 838, 1036, 1078
BstMWI	GCNNNNNNNGC	5 cut(s)	289, 512, 521, 933, 1189
BstNI	CCWGG	1 cut(s)	555
BstNSI	RCATGY	1 cut(s)	502
BstSCI	CCNGG	1 cut(s)	553
BstSFI	CTRYAG	2 cut(s)	489, 777
BstV1I	GCAGC	1 cut(s)	518
BstV2I	GAAGAC	1 cut(s)	1221
BstX2I	RGATCY	2 cut(s)	328, 675
BstYI	RGATCY	2 cut(s)	328, 675
Bsu36I	CCTNAGG	1 cut(s)	918
BsuI	GTATCC	1 cut(s)	1003
BsuRI	GGCC	3 cut(s)	473, 1098, 1223
BtsCI	GGATG	5 cut(s)	175, 259, 292, 796, 1141
BtsI	GCAGTG	1 cut(s)	830
BtsIMutI	CAGTG	3 cut(s)	830, 964, 1255
Cac8I	GCNNGC	3 cut(s)	471, 684, 715
CciI	TCATGA	1 cut(s)	982
CfoI	GCGC	1 cut(s)	719
Cfr13I	GGNCC	5 cut(s)	157, 757, 1050, 1097, 1211
CpoI	CGGWCCG	1 cut(s)	1050
Csp6I	GTAC	3 cut(s)	580, 596, 603
CspI	CGGWCCG	1 cut(s)	1050
CviAII	CATG	6 cut(s)	499, 753, 809, 983, 1180, 1225
CviQI	GTAC	3 cut(s)	580, 596, 603
DdeI	CTNAG	3 cut(s)	857, 918, 993
DpnI	GATC	7 cut(s)	76, 330, 573, 677, 840, 1038, 1080
DpnII	GATC	7 cut(s)	74, 328, 571, 675, 838, 1036, 1078
DraIII	CACNNNGTG	1 cut(s)	836
EaeI	YGGCCR	1 cut(s)	1221
Eam1104I	CTCTTC	2 cut(s)	101, 999
EarI	CTCTTC	2 cut(s)	101, 999
Eco31I	GGTCTC	2 cut(s)	763, 1068
Eco32I	GATATC	1 cut(s)	700
Eco47I	GGWCC	4 cut(s)	157, 757, 1050, 1211
Eco57I	CTGAAG	2 cut(s)	648, 872
Eco81I	CCTNAGG	1 cut(s)	918
EcoNI	CCTNNNNNAGG	2 cut(s)	467, 1080
EcoO109I	RGGNCCY	2 cut(s)	157, 757
EcoRII	CCWGG	1 cut(s)	553
EcoRV	GATATC	1 cut(s)	700
EcoT22I	ATGCAT	1 cut(s)	306
FaeI	CATG	6 cut(s)	502, 756, 812, 986, 1183, 1228
FaqI	GGGAC	3 cut(s)	526, 646, 770
FatI	CATG	6 cut(s)	498, 752, 808, 982, 1179, 1224
FauI	CCCGC	2 cut(s)	502, 1248
FauNDI	CATATG	1 cut(s)	300
FbaI	TGATCA	1 cut(s)	1078
Fnu4HI	GCNGC	1 cut(s)	507
FokI	GGATG	5 cut(s)	162, 266, 299, 783, 1128
Fsp4HI	GCNGC	1 cut(s)	507
FspBI	CTAG	2 cut(s)	393, 521
GlaI	GCGC	1 cut(s)	718
GluI	GCNGC	1 cut(s)	507
GsaI	CCCAGC	1 cut(s)	1173
GsuI	CTGGAG	1 cut(s)	157
HaeIII	GGCC	3 cut(s)	473, 1098, 1223
HapII	CCGG	1 cut(s)	455
HhaI	GCGC	1 cut(s)	719
Hin1II	CATG	6 cut(s)	502, 756, 812, 986, 1183, 1228
Hin6I	GCGC	1 cut(s)	717
HinP1I	GCGC	1 cut(s)	717
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	1 cut(s)	820
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	4 cut(s)	44, 314, 364, 569
Hpy166II	GTNNAC	4 cut(s)	496, 596, 605, 830
Hpy188I	TCNGA	5 cut(s)	250, 697, 901, 996, 1154
Hpy188III	TCNNGA	7 cut(s)	65, 97, 645, 965, 983, 1044, 1076
Hpy8I	GTNNAC	4 cut(s)	496, 596, 605, 830
HpyAV	CCTTC	6 cut(s)	170, 303, 623, 1119, 1194, 1246
HpyCH4III	ACNGT	2 cut(s)	897, 1050
HpyCH4IV	ACGT	1 cut(s)	941
HpyCH4V	TGCA	8 cut(s)	304, 469, 491, 515, 686, 713, 779, 1192
HpyF10VI	GCNNNNNNNGC	5 cut(s)	289, 512, 521, 933, 1189
HpyF3I	CTNAG	3 cut(s)	857, 918, 993
HpySE526I	ACGT	1 cut(s)	941
Hsp92II	CATG	6 cut(s)	502, 756, 812, 986, 1183, 1228
HspAI	GCGC	1 cut(s)	717
KflI	GGGWCCC	1 cut(s)	757
Ksp22I	TGATCA	1 cut(s)	1078
Kzo9I	GATC	7 cut(s)	74, 328, 571, 675, 838, 1036, 1078
LmnI	GCTCC	1 cut(s)	264
Lsp1109I	GCAGC	1 cut(s)	518
MaeI	CTAG	2 cut(s)	393, 521
MaeII	ACGT	1 cut(s)	941
MaeIII	GTNAC	2 cut(s)	352, 860
MalI	GATC	7 cut(s)	76, 330, 573, 677, 840, 1038, 1080
MboI	GATC	7 cut(s)	74, 328, 571, 675, 838, 1036, 1078
MboII	GAAGA	7 cut(s)	112, 118, 140, 613, 1016, 1046, 1221
MflI	RGATCY	2 cut(s)	328, 675
MhlI	GDGCHC	1 cut(s)	454
MlsI	TGGCCA	1 cut(s)	1223
MluCI	AATT	5 cut(s)	15, 208, 258, 343, 664
MluNI	TGGCCA	1 cut(s)	1223
MmeI	TCCRAC	1 cut(s)	879
MnlI	CCTC	8 cut(s)	16, 244, 423, 715, 834, 913, 1000, 1083
Mox20I	TGGCCA	1 cut(s)	1223
Mph1103I	ATGCAT	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	1223
MseI	TTAA	4 cut(s)	153, 194, 294, 369
Msp20I	TGGCCA	1 cut(s)	1223
MspA1I	CMGCKG	3 cut(s)	509, 577, 1169
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	1 cut(s)	555
MvaI	CCWGG	1 cut(s)	555
MwoI	GCNNNNNNNGC	5 cut(s)	289, 512, 521, 933, 1189
NdeI	CATATG	1 cut(s)	300
NdeII	GATC	7 cut(s)	74, 328, 571, 675, 838, 1036, 1078
NlaIII	CATG	6 cut(s)	502, 756, 812, 986, 1183, 1228
NlaIV	GGNNCC	2 cut(s)	758, 759
NmuCI	GTSAC	1 cut(s)	352
NsiI	ATGCAT	1 cut(s)	306
NspI	RCATGY	1 cut(s)	502
PagI	TCATGA	1 cut(s)	982
PciI	ACATGT	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	2 cut(s)	445, 832
PfeI	GAWTC	1 cut(s)	820
PflMI	CCANNNNNTGG	1 cut(s)	441
PkrI	GCNGC	1 cut(s)	508
PpuMI	RGGWCCY	2 cut(s)	157, 757
PscI	ACATGT	1 cut(s)	498
PsiI	TTATAA	1 cut(s)	188
Psp5II	RGGWCCY	2 cut(s)	157, 757
Psp6I	CCWGG	1 cut(s)	553
PspFI	CCCAGC	1 cut(s)	1169
PspGI	CCWGG	1 cut(s)	553
PspN4I	GGNNCC	2 cut(s)	758, 759
PspPI	GGNCC	5 cut(s)	157, 757, 1050, 1097, 1211
PspPPI	RGGWCCY	2 cut(s)	157, 757
PstI	CTGCAG	2 cut(s)	493, 781
PsuI	RGATCY	2 cut(s)	328, 675
PvuII	CAGCTG	2 cut(s)	577, 1169
RsaI	GTAC	3 cut(s)	581, 597, 604
RsaNI	GTAC	3 cut(s)	580, 596, 603
Rsr2I	CGGWCCG	1 cut(s)	1050
RsrII	CGGWCCG	1 cut(s)	1050
SaqAI	TTAA	4 cut(s)	153, 194, 294, 369
SatI	GCNGC	1 cut(s)	507
Sau3AI	GATC	7 cut(s)	74, 328, 571, 675, 838, 1036, 1078
Sau96I	GGNCC	5 cut(s)	157, 757, 1050, 1097, 1211
ScrFI	CCNGG	1 cut(s)	555
SduI	GDGCHC	1 cut(s)	454
SfcI	CTRYAG	2 cut(s)	489, 777
SinI	GGWCC	4 cut(s)	157, 757, 1050, 1211
SmlI	CTYRAG	1 cut(s)	884
SmoI	CTYRAG	1 cut(s)	884
Sse9I	AATT	5 cut(s)	15, 208, 258, 343, 664
SsiI	CCGC	2 cut(s)	509, 1241
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	2 cut(s)	393, 521
StyD4I	CCNGG	1 cut(s)	553
TaaI	ACNGT	2 cut(s)	897, 1050
TaiI	ACGT	1 cut(s)	944
TaqI	TCGA	3 cut(s)	448, 646, 972
TasI	AATT	5 cut(s)	15, 208, 258, 343, 664
TatI	WGTACW	2 cut(s)	579, 595
TfiI	GAWTC	1 cut(s)	820
Tru1I	TTAA	4 cut(s)	153, 194, 294, 369
Tru9I	TTAA	4 cut(s)	153, 194, 294, 369
TscAI	CASTG	2 cut(s)	837, 964
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	1 cut(s)	506
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	7 cut(s)	119, 231, 239, 270, 755, 798, 971
TspGWI	ACGGA	1 cut(s)	1042
TspRI	CASTG	2 cut(s)	837, 964
Van91I	CCANNNNNTGG	1 cut(s)	441
VpaK11BI	GGWCC	4 cut(s)	157, 757, 1050, 1211
XagI	CCTNNNNNAGG	2 cut(s)	467, 1080
XapI	RAATTY	2 cut(s)	15, 343
XceI	RCATGY	1 cut(s)	502
XspI	CTAG	2 cut(s)	393, 521
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.