Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004560

Physical Location & Seq

Genomic Coordinates Forward (+)

17059253 .. 17060967

Gene Structure 1715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g13590.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAATCATTACAACATCCTTTTTTCCAGTAACATGGGGGCAAAGCCAACACTTGAGTTGAAACTATCCGATTTTGGTGCTGAACCTGAGGACTGCTTTCTTGGCTTGACGTTAGCTGTGAAGCCCAGTGTTCCAGACTTCGATGTGGGCCATGATGCACCTCATCATATGAAAGAGGATGCATTATTTTGTTCTGGTTTGGAAGATCATTCTGGACGATCTGTTTTTTGGTCTCTTATGCCCCCGGATCAAGGTGGAATTTGTGCCCCAGTAGAGCCTTCCTTTTCTTTATCATTCAGTTCAATTCAACATCCAACAGTCAGAGTTCCACAATCGGCTGGTTACTCCATCCCATCCCTGCAGCCAAACAACTTAGATGGTCGATTTTTGACCGTGTCCCCTCCCTTCCCACAAAGCCATTGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

143

Amino Acids

15.44

Weight (kDa)

5.11

Isoelectric Point (pI)

61.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020
fragaria_vesca	FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351
malus_domestica	MD05G1169100.v1.1 MD10G1157400.v1.1
prunus_persica	Prupe.8G196200_v2.0.a1 Prupe.8G196200_v2.0.a1 Prupe.8G196200_v2.0.a1
pyrus_communis	pycom10g13590
rosa_chinensis	RchiOBHm_Chr6g0283731
rosa_laevigata	RLG00000012803
rosa_roxburghii	Rroxscaffold_7G00185230
rosa_rugosa	Rorug06G0157100 Rorug06G0157200 Rorug06G0157300
rosa_samantha	Rh6AG269300 Rh6BG271600 Rh6CG271600 Rh6DG265400
rosa_wichuraiana	Rw6G023290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	3 cut(s)	61, 303, 308
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	255
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	148
AsuC2I	CCSGG	1 cut(s)	245
AxyI	CCTNAGG	1 cut(s)	87
BaeGI	GKGCMC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	3 cut(s)	356, 361, 371
BcgI	CGANNNNNNTGC	2 cut(s)	59, 93
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	359
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
Bme1390I	CCNGG	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	148
BmrFI	CCNGG	1 cut(s)	245
BmrI	ACTGGG	2 cut(s)	120, 263
BmsI	GCATC	2 cut(s)	145, 169
BmuI	ACTGGG	2 cut(s)	120, 263
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	245
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	3 cut(s)	27, 126, 269
Bse21I	CCTNAGG	1 cut(s)	87
Bse3DI	GCAATG	1 cut(s)	418
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	5 cut(s)	15, 184, 310, 348, 353
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMI	GCAATG	1 cut(s)	418
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	3 cut(s)	27, 126, 269
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	373
BshFI	GGCC	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	150
Bso31I	GGTCTC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	3 cut(s)	205, 218, 247
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	1 cut(s)	79
BspMAI	CTGCAG	1 cut(s)	363
BspPI	GGATC	1 cut(s)	255
BspTNI	GGTCTC	1 cut(s)	237
BsrDI	GCAATG	1 cut(s)	418
BsrI	ACTGG	3 cut(s)	27, 126, 269
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	3 cut(s)	205, 218, 247
Bst4CI	ACNGT	2 cut(s)	319, 394
BstDEI	CTNAG	2 cut(s)	87, 373
BstF5I	GGATG	5 cut(s)	15, 184, 310, 348, 353
BstKTI	GATC	3 cut(s)	208, 221, 250
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	3 cut(s)	205, 218, 247
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	359
BstSLI	GKGCMC	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	373
BstXI	CCANNNNNNTGG	1 cut(s)	34
Bsu36I	CCTNAGG	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	150
BtsCI	GGATG	5 cut(s)	15, 184, 310, 348, 353
BtsIMutI	CAGTG	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	148
CviAII	CATG	2 cut(s)	34, 152
CviJI	RGCY	9 cut(s)	46, 105, 116, 124, 150, 277, 338, 364, 417
CviKI_1	RGCY	9 cut(s)	46, 105, 116, 124, 150, 277, 338, 364, 417
DdeI	CTNAG	2 cut(s)	87, 373
DpnI	GATC	3 cut(s)	207, 220, 249
DpnII	GATC	3 cut(s)	205, 218, 247
Eco31I	GGTCTC	1 cut(s)	237
Eco81I	CCTNAGG	1 cut(s)	87
EcoT22I	ATGCAT	1 cut(s)	184
FaeI	CATG	2 cut(s)	37, 155
FaiI	YATR	5 cut(s)	35, 153, 168, 170, 239
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	2 cut(s)	33, 151
FauNDI	CATATG	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	362
FokI	GGATG	5 cut(s)	2, 191, 297, 335, 340
Fsp4HI	GCNGC	1 cut(s)	362
GluI	GCNGC	1 cut(s)	362
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	1 cut(s)	245
Hin1II	CATG	2 cut(s)	37, 155
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	245
Hpy188I	TCNGA	2 cut(s)	70, 323
Hpy188III	TCNNGA	2 cut(s)	134, 213
HpyAV	CCTTC	2 cut(s)	288, 415
HpyCH4III	ACNGT	2 cut(s)	319, 394
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	3 cut(s)	158, 182, 361
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpyF3I	CTNAG	2 cut(s)	87, 373
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	2 cut(s)	37, 155
Kzo9I	GATC	3 cut(s)	205, 218, 247
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	2 cut(s)	145, 169
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	2 cut(s)	29, 341
MalI	GATC	3 cut(s)	207, 220, 249
MboI	GATC	3 cut(s)	205, 218, 247
MboII	GAAGA	1 cut(s)	215
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	2 cut(s)	258, 303
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	4 cut(s)	82, 169, 171, 411
Mph1103I	ATGCAT	1 cut(s)	184
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	102
NciI	CCSGG	1 cut(s)	245
NdeI	CATATG	1 cut(s)	168
NdeII	GATC	3 cut(s)	205, 218, 247
NlaIII	CATG	2 cut(s)	37, 155
NsiI	ATGCAT	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	4
PflFI	GACNNNGTC	1 cut(s)	394
PkrI	GCNGC	1 cut(s)	363
PspPI	GGNCC	1 cut(s)	148
PstI	CTGCAG	1 cut(s)	363
PsyI	GACNNNGTC	1 cut(s)	394
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	3 cut(s)	205, 218, 247
Sau96I	GGNCC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	5 cut(s)	88, 113, 118, 163, 256
SfaNI	GCATC	2 cut(s)	145, 169
SfcI	CTRYAG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	2 cut(s)	258, 303
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	319, 394
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	2 cut(s)	141, 382
TasI	AATT	2 cut(s)	258, 303
TfiI	GAWTC	1 cut(s)	4
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	1 cut(s)	361
TspDTI	ATGAA	2 cut(s)	17, 185
TspRI	CASTG	1 cut(s)	133
Tth111I	GACNNNGTC	1 cut(s)	394
XapI	RAATTY	1 cut(s)	258
Zsp2I	ATGCAT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.