Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004560

Physical Location & Seq

Genomic Coordinates Forward (+)

49040516 .. 49045410

Gene Structure 4895 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG271600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAGAGATATAAAATTTTGGAGGAACTTGGTGATGGCACTTGTGGTAGTGTATATAAGGCTCGTGATTGGAGAACAAATGAGATTGTTGCTGTCAAGAAGATGAAGAGAAAGTTCTTTTTCTGGGAAGAATACTGGAGATTGCGAGAGATTAAGGTCCTTCGCAAACTAAATCATCCAAATATTATAAAGTTAAAGGAGGTGGTTAGGGAAAACAACGAGGTGTTCCTCATTTTTGAGTACATGAACTATAATTTGTATGAAATAATGAAAGAACGACAAAGACCCTTTTCAGAGGATGAAATTAGGAGCTTTATGTCTCAACTGCTGGATGGGCTTAATCATATGCATAGAAGGGGATATTTTCACCGAGATCTAAAACCAGGGGCAAAGCCAACACTTGAGTTGAAACTGTCGGACTTTGGTGCTGAACCTGAGGACTGCTTTCTTGGCTTGACGTTGGCTGTGAAGCCCAGTGTTCCAGACTTCGATGTGGTTCATGATGTGTCTCAGAATATGGAAGAGGATACATTATTTTGCTCTGGTTTGGAAGATCATTCAGGACGGTCCGTTTTTTGGTCTCTAATGCCTCCTGATCAAGGTGGAATATGTGCCCCAGTTGAGCCTTCGTTTTCTTTGTCATTCAGTTCAATACAACATCCATCAGTCAGAGTTCCACAATCAGCTGGGTTCTCCATGCCTTCTTTGCAGTCTAACATTGTAGATGGTCCATTATTGGCCATGTCTTCTCCCTTCCCGCAAAGTCATTGCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

258

Amino Acids

29.88

Weight (kDa)

6.01

Isoelectric Point (pI)

60.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 142	7.3e-36	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	5 - 127	3.7e-20	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020 AT4G13020
fragaria_vesca	FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351 FvH4_2g18351
malus_domestica	MD05G1169100.v1.1 MD10G1157400.v1.1
prunus_persica	Prupe.8G196200_v2.0.a1 Prupe.8G196200_v2.0.a1 Prupe.8G196200_v2.0.a1
pyrus_communis	pycom10g13590
rosa_chinensis	RchiOBHm_Chr6g0283731
rosa_laevigata	RLG00000012803
rosa_roxburghii	Rroxscaffold_7G00185230
rosa_rugosa	Rorug06G0157100 Rorug06G0157200 Rorug06G0157300
rosa_samantha	Rh6AG269300 Rh6BG271600 Rh6CG271600 Rh6DG265400
rosa_wichuraiana	Rw6G023290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	188
AciI	CCGC	1 cut(s)	758
AcoI	YGGCCR	1 cut(s)	738
AcsI	RAATTY	1 cut(s)	15
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	2 cut(s)	576, 599
AgsI	TTSAA	2 cut(s)	409, 651
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	2 cut(s)	312, 686
AluI	AGCT	2 cut(s)	312, 686
Alw26I	GTCTC	3 cut(s)	324, 513, 585
AoxI	GGCC	1 cut(s)	738
ApoI	RAATTY	1 cut(s)	15
AspS9I	GGNCC	3 cut(s)	157, 567, 728
AsuHPI	GGTGA	2 cut(s)	44, 359
AvaII	GGWCC	3 cut(s)	157, 567, 728
AxyI	CCTNAGG	1 cut(s)	435
BaeGI	GKGCMC	1 cut(s)	616
BalI	TGGCCA	1 cut(s)	740
BauI	CACGAG	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	738
BccI	CCATC	4 cut(s)	29, 326, 670, 719
BciT130I	CCWGG	1 cut(s)	384
BciVI	GTATCC	1 cut(s)	520
BclI	TGATCA	1 cut(s)	595
BcoDI	GTCTC	3 cut(s)	324, 513, 585
BfuI	GTATCC	1 cut(s)	520
BglII	AGATCT	1 cut(s)	373
Bme1390I	CCNGG	1 cut(s)	384
Bme18I	GGWCC	3 cut(s)	157, 567, 728
BmgT120I	GGNCC	3 cut(s)	157, 567, 728
BmrFI	CCNGG	1 cut(s)	384
BmrI	ACTGGG	2 cut(s)	468, 611
BmuI	ACTGGG	2 cut(s)	468, 611
BpiI	GAAGAC	1 cut(s)	738
BpmI	CTGGAG	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	422
BsaI	GGTCTC	1 cut(s)	585
BsaJI	CCNNGG	1 cut(s)	383
Bsc4I	CCNNNNNNNGG	2 cut(s)	576, 599
Bse1I	ACTGG	3 cut(s)	140, 474, 617
Bse21I	CCTNAGG	1 cut(s)	435
Bse3DI	GCAATG	1 cut(s)	766
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	1 cut(s)	383
BseGI	GGATG	4 cut(s)	175, 304, 337, 658
BseLI	CCNNNNNNNGG	2 cut(s)	576, 599
BseMI	GCAATG	1 cut(s)	766
BseMII	CTCAG	2 cut(s)	426, 524
BseNI	ACTGG	3 cut(s)	140, 474, 617
BseSI	GKGCMC	1 cut(s)	616
BseYI	CCCAGC	1 cut(s)	686
BshFI	GGCC	1 cut(s)	740
BslI	CCNNNNNNNGG	2 cut(s)	576, 599
BsmAI	GTCTC	3 cut(s)	324, 513, 585
BsnI	GGCC	1 cut(s)	740
Bso31I	GGTCTC	1 cut(s)	585
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	3 cut(s)	373, 553, 595
BspACI	CCGC	1 cut(s)	758
BspANI	GGCC	1 cut(s)	740
BspCNI	CTCAG	2 cut(s)	427, 523
BspHI	TCATGA	1 cut(s)	499
BspTNI	GGTCTC	1 cut(s)	585
BsrDI	GCAATG	1 cut(s)	766
BsrI	ACTGG	3 cut(s)	140, 474, 617
BssECI	CCNNGG	1 cut(s)	383
BssMI	GATC	3 cut(s)	373, 553, 595
BssSI	CACGAG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	2 cut(s)	414, 567
Bst6I	CTCTTC	2 cut(s)	101, 516
BstDEI	CTNAG	2 cut(s)	435, 510
BstENI	CCTNNNNNAGG	1 cut(s)	597
BstF5I	GGATG	4 cut(s)	175, 304, 337, 658
BstKTI	GATC	3 cut(s)	376, 556, 598
BstMAI	GTCTC	3 cut(s)	324, 513, 585
BstMBI	GATC	3 cut(s)	373, 553, 595
BstMWI	GCNNNNNNNGC	3 cut(s)	334, 450, 706
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	382
BstSLI	GKGCMC	1 cut(s)	616
BstV2I	GAAGAC	1 cut(s)	738
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
Bsu36I	CCTNAGG	1 cut(s)	435
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	1 cut(s)	740
BtsCI	GGATG	4 cut(s)	175, 304, 337, 658
BtsIMutI	CAGTG	2 cut(s)	481, 772
CciI	TCATGA	1 cut(s)	499
Cfr13I	GGNCC	3 cut(s)	157, 567, 728
CpoI	CGGWCCG	1 cut(s)	567
Csp6I	GTAC	1 cut(s)	241
CspI	CGGWCCG	1 cut(s)	567
CviAII	CATG	4 cut(s)	244, 500, 697, 742
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	2 cut(s)	435, 510
DpnI	GATC	3 cut(s)	375, 555, 597
DpnII	GATC	3 cut(s)	373, 553, 595
EaeI	YGGCCR	1 cut(s)	738
Eam1104I	CTCTTC	2 cut(s)	101, 516
EarI	CTCTTC	2 cut(s)	101, 516
Eco31I	GGTCTC	1 cut(s)	585
Eco47I	GGWCC	3 cut(s)	157, 567, 728
Eco81I	CCTNAGG	1 cut(s)	435
EcoNI	CCTNNNNNAGG	1 cut(s)	597
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	382
EcoT22I	ATGCAT	1 cut(s)	351
FaeI	CATG	4 cut(s)	247, 503, 700, 745
FatI	CATG	4 cut(s)	243, 499, 696, 741
FauI	CCCGC	1 cut(s)	765
FauNDI	CATATG	1 cut(s)	345
FbaI	TGATCA	1 cut(s)	595
FokI	GGATG	4 cut(s)	162, 311, 344, 645
GsaI	CCCAGC	1 cut(s)	690
GsuI	CTGGAG	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	740
Hin1II	CATG	4 cut(s)	247, 503, 700, 745
HphI	GGTGA	2 cut(s)	44, 359
Hpy188I	TCNGA	4 cut(s)	295, 418, 513, 671
Hpy188III	TCNNGA	6 cut(s)	65, 97, 482, 500, 561, 593
HpyAV	CCTTC	5 cut(s)	170, 348, 636, 711, 763
HpyCH4III	ACNGT	2 cut(s)	414, 567
HpyCH4IV	ACGT	1 cut(s)	458
HpyCH4V	TGCA	2 cut(s)	349, 709
HpyF10VI	GCNNNNNNNGC	3 cut(s)	334, 450, 706
HpyF3I	CTNAG	2 cut(s)	435, 510
HpySE526I	ACGT	1 cut(s)	458
Hsp92II	CATG	4 cut(s)	247, 503, 700, 745
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	3 cut(s)	373, 553, 595
LmnI	GCTCC	1 cut(s)	309
MaeII	ACGT	1 cut(s)	458
MalI	GATC	3 cut(s)	375, 555, 597
MboI	GATC	3 cut(s)	373, 553, 595
MboII	GAAGA	6 cut(s)	112, 118, 140, 533, 563, 738
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	1 cut(s)	616
MlsI	TGGCCA	1 cut(s)	740
MluCI	AATT	3 cut(s)	15, 253, 303
MluNI	TGGCCA	1 cut(s)	740
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	8 cut(s)	16, 193, 214, 239, 289, 430, 517, 600
Mox20I	TGGCCA	1 cut(s)	740
Mph1103I	ATGCAT	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	740
MseI	TTAA	3 cut(s)	153, 194, 339
Msp20I	TGGCCA	1 cut(s)	740
MspA1I	CMGCKG	1 cut(s)	686
MspR9I	CCNGG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	3 cut(s)	334, 450, 706
NdeI	CATATG	1 cut(s)	345
NdeII	GATC	3 cut(s)	373, 553, 595
NlaIII	CATG	4 cut(s)	247, 503, 700, 745
NsiI	ATGCAT	1 cut(s)	351
PagI	TCATGA	1 cut(s)	499
PpuMI	RGGWCCY	1 cut(s)	157
PsiI	TTATAA	1 cut(s)	188
Psp5II	RGGWCCY	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	382
PspFI	CCCAGC	1 cut(s)	686
PspGI	CCWGG	1 cut(s)	382
PspPI	GGNCC	3 cut(s)	157, 567, 728
PspPPI	RGGWCCY	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	373
PvuII	CAGCTG	1 cut(s)	686
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
Rsr2I	CGGWCCG	1 cut(s)	567
RsrII	CGGWCCG	1 cut(s)	567
SaqAI	TTAA	3 cut(s)	153, 194, 339
Sau3AI	GATC	3 cut(s)	373, 553, 595
Sau96I	GGNCC	3 cut(s)	157, 567, 728
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	1 cut(s)	616
SetI	ASST	8 cut(s)	159, 204, 225, 314, 436, 461, 604, 688
SinI	GGWCC	3 cut(s)	157, 567, 728
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	3 cut(s)	15, 253, 303
SsiI	CCGC	1 cut(s)	758
SspI	AATATT	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	382
TaaI	ACNGT	2 cut(s)	414, 567
TaiI	ACGT	1 cut(s)	461
TaqI	TCGA	1 cut(s)	489
TasI	AATT	3 cut(s)	15, 253, 303
TatI	WGTACW	1 cut(s)	240
Tru1I	TTAA	3 cut(s)	153, 194, 339
Tru9I	TTAA	3 cut(s)	153, 194, 339
TscAI	CASTG	1 cut(s)	481
TspDTI	ATGAA	6 cut(s)	119, 260, 276, 284, 315, 488
TspGWI	ACGGA	1 cut(s)	559
TspRI	CASTG	1 cut(s)	481
VpaK11BI	GGWCC	3 cut(s)	157, 567, 728
XagI	CCTNNNNNAGG	1 cut(s)	597
XapI	RAATTY	1 cut(s)	15
Zsp2I	ATGCAT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.