Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0012577

Physical Location & Seq

Genomic Coordinates Forward (+)

31706933 .. 31709156

Gene Structure 2224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1189100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGTTGCTAAGGAGCTCATCAACGCCAGTGATTGGATCTGTTCTTGCATCATACGCCTCAGAAAGCCCTAACGTCATCAGCAATCATCACTCAGATCCCAAACCAAACACCTTCCACCAACATACGCCCACCAAGTTCTCATTCCACCAACCTGGATCTCTCACCATCTCACACAACTCCTCACCAATCTCTCCCTCCTCCCTTGATATGGACCGGCATTCGCTAACCGGGTTCCGAAGGGCTCAGTCTGATGGGAACTTGGAAGGACTGGCCTATGCTTCTTGTGACACTGAGGATCAATTCTCTGATTCAAAACTACCCAACATGTTCTCCGCAAGATCCAAGTGCACGATGCTGCAAACTATACCGTCTCCTTCGTTGCATAACTCGGGCGGTTACGACGAGGGCGAGGACGATAGTGATGTGGAATATGAGGAAGAAGAAGAAGAGTTTGAGGAGGAGAATGTGGAGAGAGTGGCGGCGATGGAAGGTGAAAATGTTGGTTTAGAGGAGAAGGTGAAGAACATGAGCTTAACTCGGGATGTGAAGTTTTTGGACAAAATATGGAATACAGGGTTTGAGGAAAAAAGAGAGCTTGCGAGTCAAGAAATGTATCTTGCAAGGGGGCTAGGGTCTGGTGGTGGGGGTGGTGGTGGGGGTGGTGGTGGAAGCGGTAGCCGCGGTGGTGGAGATGTTAATTGGGATGGCTATGATAGTGATGGAGGAGATGACAACCATGGGGTTGAGAGGCATCACAAGAAGCTGGTTGAGGAAAATCCAGGCAACCCTTTGTTCCTTAGAAATTATGCTCAATTTTTGTATAAGACCAAGAGAGATCTTCATGGGGCAGAGGAGTACTACTCTAGAACCATCCTAGCAGATCCTGATGATGGTGAAGTTATGGCTCAATATGCTAAGCTAATATGGGAGCTACACCATGACCAAGAGAGAGCCTTAAGCTGCTATGAACGAGCACTCCAAGCTGCACCTCAAGACAGCTATGTCCACGCAGCATACGCCGGTTTTCTCTGGGAAGTAGAGGAAGACGAGGACGAAGCTGAAGCGGAGAACGATCCTCCTGCCATGTCATCTTATCTTCATGAGAGAATCATGGCATCCACACGTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_19

Protein Analysis

377

Amino Acids

41.57

Weight (kDa)

4.65

Isoelectric Point (pI)

63.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012577)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20530 FvH4_2g20530 FvH4_2g20530 FvH4_2g20530 FvH4_2g20530
malus_domestica	MD05G1189100.v1.1
prunus_persica	Prupe.8G215700_v2.0.a1 Prupe.8G215700_v2.0.a1
pyrus_communis	pycom05g17370
rosa_chinensis	RchiOBHm_Chr6g0286691
rosa_laevigata	RLG00000012552
rosa_multiflora	Rmu_sc0007546.1_g000002
rosa_roxburghii	Rroxscaffold_7G00182110
rosa_rugosa	Rorug06G0181900
rosa_samantha	Rh6AG294800 Rh6BG297900 Rh6CG298400 Rh6DG290400
rosa_wichuraiana	Rw6G025350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1001
AccB7I	CCANNNNNTGG	1 cut(s)	32
AccII	CGCG	1 cut(s)	681
AciI	CCGC	7 cut(s)	333, 393, 479, 672, 679, 681, 1064
AclWI	GGATC	7 cut(s)	43, 89, 163, 303, 333, 875, 1067
AcuI	CTGAAG	1 cut(s)	1080
AcvI	CACGTG	1 cut(s)	1124
AfaI	GTAC	1 cut(s)	857
AfiI	CCNNNNNNNGG	3 cut(s)	32, 208, 890
AflII	CTTAAG	1 cut(s)	955
AflIII	ACRYGT	2 cut(s)	324, 1121
AgsI	TTSAA	1 cut(s)	312
AjnI	CCWGG	2 cut(s)	151, 778
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AloI	GAACNNNNNNTCC	2 cut(s)	960, 992
Alw21I	GWGCWC	3 cut(s)	17, 350, 976
Alw26I	GTCTC	1 cut(s)	375
Alw44I	GTGCAC	1 cut(s)	346
AlwI	GGATC	7 cut(s)	43, 89, 163, 303, 333, 875, 1067
AlwNI	CAGNNNCTG	1 cut(s)	884
Ama87I	CYCGRG	2 cut(s)	388, 537
AoxI	GGCC	1 cut(s)	270
ApaLI	GTGCAC	1 cut(s)	346
ApeKI	GCWGC	4 cut(s)	355, 960, 983, 1010
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	5 cut(s)	154, 174, 503, 529, 905
AvaI	CYCGRG	2 cut(s)	388, 537
AvaII	GGWCC	1 cut(s)	211
BaeGI	GKGCMC	1 cut(s)	350
BanII	GRGCYC	2 cut(s)	17, 244
BbrPI	CACGTG	1 cut(s)	1124
BbsI	GAAGAC	1 cut(s)	1050
Bbv12I	GWGCWC	3 cut(s)	17, 350, 976
BbvI	GCAGC	4 cut(s)	342, 947, 970, 1022
BccI	CCATC	7 cut(s)	173, 245, 478, 698, 713, 878, 884
BcgI	CGANNNNNNTGC	2 cut(s)	1061, 1095
BciT130I	CCWGG	2 cut(s)	153, 780
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	3 cut(s)	629, 864, 875
BfrI	CTTAAG	1 cut(s)	955
BglII	AGATCT	1 cut(s)	835
BisI	GCNGC	6 cut(s)	356, 480, 679, 961, 984, 1011
BlpI	GCTNAGC	1 cut(s)	915
BlsI	GCNGC	6 cut(s)	357, 481, 680, 962, 985, 1012
BmcAI	AGTACT	1 cut(s)	857
Bme1390I	CCNGG	3 cut(s)	153, 229, 780
Bme18I	GGWCC	1 cut(s)	211
BmeT110I	CYCGRG	2 cut(s)	388, 537
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	233
BmrFI	CCNGG	3 cut(s)	153, 229, 780
BmsI	GCATC	4 cut(s)	56, 342, 760, 1124
BpiI	GAAGAC	1 cut(s)	1050
BplI	GAGNNNNNCTC	4 cut(s)	520, 552, 845, 877
Bpu10I	CCTNAGC	1 cut(s)	8
Bpu1102I	GCTNAGC	1 cut(s)	915
BpuEI	CTTGAG	1 cut(s)	975
BpuMI	CCSGG	1 cut(s)	229
BsaAI	YACGTR	1 cut(s)	1124
BsaJI	CCNNGG	2 cut(s)	679, 736
BsaXI	ACNNNNNCTCC	4 cut(s)	314, 344, 960, 990
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 208, 890
Bse118I	RCCGGY	2 cut(s)	213, 1019
Bse1I	ACTGG	2 cut(s)	26, 273
BseBI	CCWGG	2 cut(s)	153, 780
BseDI	CCNNGG	2 cut(s)	679, 736
BseGI	GGATG	4 cut(s)	547, 709, 870, 1115
BseLI	CCNNNNNNNGG	3 cut(s)	32, 208, 890
BseMII	CTCAG	4 cut(s)	72, 105, 257, 282
BseNI	ACTGG	2 cut(s)	26, 273
BseRI	GAGGAG	7 cut(s)	169, 187, 470, 473, 524, 738, 866
BseSI	GKGCMC	1 cut(s)	350
BseXI	GCAGC	4 cut(s)	342, 947, 970, 1022
BsgI	GTGCAG	1 cut(s)	969
Bsh1236I	CGCG	1 cut(s)	681
BshFI	GGCC	1 cut(s)	272
BsiHKAI	GWGCWC	3 cut(s)	17, 350, 976
BsiHKCI	CYCGRG	2 cut(s)	388, 537
BsiSI	CCGG	3 cut(s)	214, 228, 1020
BslI	CCNNNNNNNGG	3 cut(s)	32, 208, 890
BsmAI	GTCTC	1 cut(s)	375
BsmBI	CGTCTC	1 cut(s)	375
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	272
BsoBI	CYCGRG	2 cut(s)	388, 537
Bsp1286I	GDGCHC	4 cut(s)	17, 244, 350, 976
Bsp143I	GATC	8 cut(s)	35, 94, 155, 295, 338, 835, 880, 1072
Bsp1720I	GCTNAGC	1 cut(s)	915
Bsp19I	CCATGG	1 cut(s)	736
BspACI	CCGC	7 cut(s)	333, 393, 479, 672, 679, 681, 1064
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	4 cut(s)	71, 104, 256, 283
BspFNI	CGCG	1 cut(s)	681
BspHI	TCATGA	1 cut(s)	1099
BspLI	GGNNCC	1 cut(s)	233
BspPI	GGATC	7 cut(s)	43, 89, 163, 303, 333, 875, 1067
BspTI	CTTAAG	1 cut(s)	955
BsrFI	RCCGGY	2 cut(s)	213, 1019
BsrI	ACTGG	2 cut(s)	26, 273
BssAI	RCCGGY	2 cut(s)	213, 1019
BssECI	CCNNGG	2 cut(s)	679, 736
BssMI	GATC	8 cut(s)	35, 94, 155, 295, 338, 835, 880, 1072
BssT1I	CCWWGG	1 cut(s)	736
Bst2UI	CCWGG	2 cut(s)	153, 780
Bst4CI	ACNGT	1 cut(s)	369
Bst6I	CTCTTC	1 cut(s)	441
BstAFI	CTTAAG	1 cut(s)	955
BstBAI	YACGTR	1 cut(s)	1124
BstC8I	GCNNGC	1 cut(s)	597
BstDEI	CTNAG	7 cut(s)	8, 58, 91, 243, 291, 797, 915
BstDSI	CCRYGG	2 cut(s)	679, 736
BstF5I	GGATG	4 cut(s)	547, 709, 870, 1115
BstFNI	CGCG	1 cut(s)	681
BstKTI	GATC	8 cut(s)	38, 97, 158, 298, 341, 838, 883, 1075
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	8 cut(s)	35, 94, 155, 295, 338, 835, 880, 1072
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 678, 911, 980, 1016
BstNI	CCWGG	2 cut(s)	153, 780
BstNSI	RCATGY	1 cut(s)	328
BstSCI	CCNGG	3 cut(s)	151, 227, 778
BstSLI	GKGCMC	1 cut(s)	350
BstUI	CGCG	1 cut(s)	681
BstV1I	GCAGC	4 cut(s)	342, 947, 970, 1022
BstV2I	GAAGAC	1 cut(s)	1050
BstX2I	RGATCY	6 cut(s)	35, 94, 155, 338, 835, 880
BstXI	CCANNNNNNTGG	1 cut(s)	152
BstYI	RGATCY	6 cut(s)	35, 94, 155, 338, 835, 880
BsuRI	GGCC	1 cut(s)	272
BtgI	CCRYGG	2 cut(s)	679, 736
BtgZI	GCGATG	1 cut(s)	497
BtsCI	GGATG	4 cut(s)	547, 709, 870, 1115
BtsIMutI	CAGTG	2 cut(s)	33, 288
Cac8I	GCNNGC	1 cut(s)	597
CaiI	CAGNNNCTG	1 cut(s)	884
CciI	TCATGA	1 cut(s)	1099
Cfr10I	RCCGGY	2 cut(s)	213, 1019
Cfr13I	GGNCC	1 cut(s)	211
Cfr42I	CCGCGG	1 cut(s)	682
Csp6I	GTAC	1 cut(s)	856
CviAII	CATG	8 cut(s)	325, 526, 737, 842, 938, 1084, 1100, 1111
CviQI	GTAC	1 cut(s)	856
DdeI	CTNAG	7 cut(s)	8, 58, 91, 243, 291, 797, 915
DpnI	GATC	8 cut(s)	37, 96, 157, 297, 340, 837, 882, 1074
DpnII	GATC	8 cut(s)	35, 94, 155, 295, 338, 835, 880, 1072
DrdI	GACNNNNNNGTC	1 cut(s)	1001
DseDI	GACNNNNNNGTC	1 cut(s)	1001
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
Ecl136II	GAGCTC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	736
Eco24I	GRGCYC	2 cut(s)	17, 244
Eco47I	GGWCC	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	15
Eco57I	CTGAAG	1 cut(s)	1080
Eco72I	CACGTG	1 cut(s)	1124
Eco88I	CYCGRG	2 cut(s)	388, 537
EcoICRI	GAGCTC	1 cut(s)	15
EcoRII	CCWGG	2 cut(s)	151, 778
EcoT14I	CCWWGG	1 cut(s)	736
EcoT38I	GRGCYC	2 cut(s)	17, 244
ErhI	CCWWGG	1 cut(s)	736
Esp3I	CGTCTC	1 cut(s)	375
FaeI	CATG	8 cut(s)	328, 529, 740, 845, 941, 1087, 1103, 1114
FatI	CATG	8 cut(s)	324, 525, 736, 841, 937, 1083, 1099, 1110
Fnu4HI	GCNGC	6 cut(s)	356, 480, 679, 961, 984, 1011
FokI	GGATG	4 cut(s)	554, 716, 857, 1102
FriOI	GRGCYC	2 cut(s)	17, 244
Fsp4HI	GCNGC	6 cut(s)	356, 480, 679, 961, 984, 1011
FspBI	CTAG	3 cut(s)	629, 864, 875
GluI	GCNGC	6 cut(s)	356, 480, 679, 961, 984, 1011
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	3 cut(s)	214, 228, 1020
Hin1II	CATG	8 cut(s)	328, 529, 740, 845, 941, 1087, 1103, 1114
HinfI	GANTC	3 cut(s)	308, 601, 1107
HpaII	CCGG	3 cut(s)	214, 228, 1020
HphI	GGTGA	5 cut(s)	154, 174, 503, 529, 905
Hpy166II	GTNNAC	2 cut(s)	348, 1006
Hpy188I	TCNGA	5 cut(s)	61, 94, 236, 250, 307
Hpy188III	TCNNGA	6 cut(s)	539, 605, 864, 884, 992, 1100
Hpy8I	GTNNAC	2 cut(s)	348, 1006
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	6 cut(s)	121, 231, 257, 384, 482, 508
HpyCH4III	ACNGT	1 cut(s)	369
HpyCH4IV	ACGT	2 cut(s)	72, 1123
HpyCH4V	TGCA	6 cut(s)	47, 348, 358, 382, 620, 986
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 678, 911, 980, 1016
HpyF3I	CTNAG	7 cut(s)	8, 58, 91, 243, 291, 797, 915
HpySE526I	ACGT	2 cut(s)	72, 1123
Hsp92II	CATG	8 cut(s)	328, 529, 740, 845, 941, 1087, 1103, 1114
KspI	CCGCGG	1 cut(s)	682
Kzo9I	GATC	8 cut(s)	35, 94, 155, 295, 338, 835, 880, 1072
LmnI	GCTCC	2 cut(s)	12, 928
Lsp1109I	GCAGC	4 cut(s)	342, 947, 970, 1022
LweI	GCATC	4 cut(s)	56, 342, 760, 1124
MaeI	CTAG	3 cut(s)	629, 864, 875
MaeII	ACGT	2 cut(s)	72, 1123
MaeIII	GTNAC	2 cut(s)	284, 395
MalI	GATC	8 cut(s)	37, 96, 157, 297, 340, 837, 882, 1074
MboI	GATC	8 cut(s)	35, 94, 155, 295, 338, 835, 880, 1072
MboII	GAAGA	8 cut(s)	449, 452, 455, 458, 532, 830, 1055, 1088
MflI	RGATCY	6 cut(s)	35, 94, 155, 338, 835, 880
MhlI	GDGCHC	4 cut(s)	17, 244, 350, 976
MluCI	AATT	4 cut(s)	299, 697, 802, 812
MlyI	GAGTC	1 cut(s)	610
MseI	TTAA	3 cut(s)	533, 696, 956
MspA1I	CMGCKG	1 cut(s)	681
MspCI	CTTAAG	1 cut(s)	955
MspI	CCGG	3 cut(s)	214, 228, 1020
MspR9I	CCNGG	3 cut(s)	153, 229, 780
Mva1269I	GAATGC	1 cut(s)	217
MvaI	CCWGG	2 cut(s)	153, 780
MvnI	CGCG	1 cut(s)	681
MwoI	GCNNNNNNNGC	5 cut(s)	53, 678, 911, 980, 1016
NciI	CCSGG	1 cut(s)	229
NcoI	CCATGG	1 cut(s)	736
NdeII	GATC	8 cut(s)	35, 94, 155, 295, 338, 835, 880, 1072
NlaIII	CATG	8 cut(s)	328, 529, 740, 845, 941, 1087, 1103, 1114
NlaIV	GGNNCC	1 cut(s)	233
NmuCI	GTSAC	1 cut(s)	284
NspI	RCATGY	1 cut(s)	328
PagI	TCATGA	1 cut(s)	1099
PciI	ACATGT	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PctI	GAATGC	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	308, 1107
PflMI	CCANNNNNTGG	1 cut(s)	32
PkrI	GCNGC	6 cut(s)	357, 481, 680, 962, 985, 1012
PleI	GAGTC	1 cut(s)	609
PmaCI	CACGTG	1 cut(s)	1124
PmlI	CACGTG	1 cut(s)	1124
PpsI	GAGTC	1 cut(s)	609
Ppu21I	YACGTR	1 cut(s)	1124
PscI	ACATGT	1 cut(s)	324
Psp124BI	GAGCTC	1 cut(s)	17
Psp6I	CCWGG	2 cut(s)	151, 778
PspCI	CACGTG	1 cut(s)	1124
PspGI	CCWGG	2 cut(s)	151, 778
PspN4I	GGNNCC	1 cut(s)	233
PspPI	GGNCC	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	884
PsuI	RGATCY	6 cut(s)	35, 94, 155, 338, 835, 880
RsaI	GTAC	1 cut(s)	857
RsaNI	GTAC	1 cut(s)	856
SacI	GAGCTC	1 cut(s)	17
SacII	CCGCGG	1 cut(s)	682
SaqAI	TTAA	3 cut(s)	533, 696, 956
SatI	GCNGC	6 cut(s)	356, 480, 679, 961, 984, 1011
Sau3AI	GATC	8 cut(s)	35, 94, 155, 295, 338, 835, 880, 1072
Sau96I	GGNCC	1 cut(s)	211
ScaI	AGTACT	1 cut(s)	857
SchI	GAGTC	1 cut(s)	610
ScrFI	CCNGG	3 cut(s)	153, 229, 780
SduI	GDGCHC	4 cut(s)	17, 244, 350, 976
SfaNI	GCATC	4 cut(s)	56, 342, 760, 1124
Sfr303I	CCGCGG	1 cut(s)	682
SgrBI	CCGCGG	1 cut(s)	682
SinI	GGWCC	1 cut(s)	211
SmlI	CTYRAG	2 cut(s)	955, 990
SmoI	CTYRAG	2 cut(s)	955, 990
Sse9I	AATT	4 cut(s)	299, 697, 802, 812
SsiI	CCGC	7 cut(s)	333, 393, 479, 672, 679, 681, 1064
SspMI	CTAG	3 cut(s)	629, 864, 875
SstI	GAGCTC	1 cut(s)	17
StyD4I	CCNGG	3 cut(s)	151, 227, 778
StyI	CCWWGG	1 cut(s)	736
TaaI	ACNGT	1 cut(s)	369
TaiI	ACGT	2 cut(s)	75, 1126
TasI	AATT	4 cut(s)	299, 697, 802, 812
TatI	WGTACW	1 cut(s)	855
TauI	GCSGC	2 cut(s)	482, 681
TfiI	GAWTC	2 cut(s)	308, 1107
Tru1I	TTAA	3 cut(s)	533, 696, 956
Tru9I	TTAA	3 cut(s)	533, 696, 956
TscAI	CASTG	2 cut(s)	33, 295
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	4 cut(s)	355, 960, 983, 1010
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	3 cut(s)	830, 981, 1088
TspRI	CASTG	2 cut(s)	33, 295
Van91I	CCANNNNNTGG	1 cut(s)	32
Vha464I	CTTAAG	1 cut(s)	955
VneI	GTGCAC	1 cut(s)	346
VpaK11BI	GGWCC	1 cut(s)	211
XbaI	TCTAGA	1 cut(s)	863
XceI	RCATGY	1 cut(s)	328
XspI	CTAG	3 cut(s)	629, 864, 875
ZrmI	AGTACT	1 cut(s)	857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.