RLG00000012552

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0012577
Physical Location & Seq
Reverse (-)
19785163 .. 19786448
1286 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012552

Sequence Viewer

Length: 1098 bp
ATGTTGCTGAGGAGCTCTTCAACACCAGTTATTGGATCCCTTCTTGCATCATTCTCAGCTGAAAGTCCACTTGGCAATCACTTTGAACCAAAACCAACCTCAATCCACCAAACTCCCACTAAGTTTTCATTTCACCAAACTGGGCCTCTCAACATCTCACACGGTTCCTCACCAATCTCTCCCTCCATTGATCTTTCCTCCGAGTTTCTTCGGAGGGCTCAGTCTGATGGAAACTTGGAAGGACTGGCCTATGCAGCTTCTTGTGATAAACATGAAGATGATCCGTTCTTCTGTGATTTATACCAACCCAACAAGTCGAGATCCAGGGGAATACCGTTGCAAACTATAGATTCTTTTTCGACGTATAACTCGGGAGCTTTGGGTGAAGATGAAGAAGATAGTGATAGGGAATTTGATGAAGAGGAAGTAGAAGAGGTTGAGAAAAGTGAGAGAGTCATGGCTACTGAAGGTGATAGTGTTGGTTTGGAAGAGAAGGTGAGGAAGGTGAGTTTATCCGAGGACATGAGAACTATGCAGAAAATGTGGGGTGGGGGTTATGAAGAACAAAGAGAGCTAGAAAGTCGAGAAATGCATCTTGCAACGGGACTTGGGATTGATGGTGGAAGTGGCGGTGGCCGGGGTGGTCGCGAGGTTAATTGGGAAAGCACTGGTGGAGATGGAGATGACAACAACCGGGGGGTTGAGGAGCATTACAAAAAGATGGTAGACGAACATCCTGGGAACCCATTGTTTCTCGGAAATTATGCTAATTTTTTGTATCAGACCAAGAGAGACCTTCCTTTAGCAGAGGAATACTACTCTCGTTCGATCCTAGCAGACCCGAACGACGGTGAAATTTTGGCACAATATGCCAAGGTAGTATGGGAGTTGCACCATGATGAAGATAGAGCCTTAAGCTACTATGAACGAGCAGTCCAAGCTGCACCTCAAGATAGCCATGTCCATGCAGCATACGCTGGCTTCCTATGGGAAACAGAGGAAGATGACGAAGATGAAAATGAAGCAGATCTGGGACAAGATCTTGGCGCCGTGTCGCCATATATTCATGAAGGAATCATGACTTCAGCAAGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_19

Protein Analysis

366

Amino Acids

40.44

Weight (kDa)

4.46

Isoelectric Point (pI)

59.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1046
AccB7I CCANNNNNTGG 1 cut(s) 32
AccI GTMKAC 1 cut(s) 726
AccII CGCG 1 cut(s) 648
AciI CCGC 1 cut(s) 630
AclWI GGATC 5 cut(s) 30, 43, 275, 315, 823
AcoI YGGCCR 1 cut(s) 634
AcsI RAATTY 2 cut(s) 410, 855
AcuI CTGAAG 2 cut(s) 486, 1068
AcyI GRCGYC 1 cut(s) 1047
AfiI CCNNNNNNNGG 2 cut(s) 32, 848
AflII CTTAAG 1 cut(s) 913
AgsI TTSAA 2 cut(s) 21, 86
AjnI CCWGG 2 cut(s) 323, 736
AjuI GAANNNNNNNTTGG 2 cut(s) 54, 86
AloI GAACNNNNNNTCC 2 cut(s) 918, 950
AluBI AGCT 7 cut(s) 15, 59, 257, 377, 574, 918, 941
AluI AGCT 7 cut(s) 15, 59, 257, 377, 574, 918, 941
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 786
AlwI GGATC 5 cut(s) 30, 43, 275, 315, 823
Ama87I CYCGRG 1 cut(s) 370
AoxI GGCC 3 cut(s) 143, 246, 634
ApeKI GCWGC 3 cut(s) 254, 941, 968
ApoI RAATTY 2 cut(s) 410, 855
AspLEI GCGC 1 cut(s) 1049
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 2 cut(s) 638, 695
AsuHPI GGTGA 7 cut(s) 125, 162, 395, 482, 508, 517, 863
AvaI CYCGRG 1 cut(s) 370
BamHI GGATCC 1 cut(s) 35
BanI GGYRCC 1 cut(s) 1046
BanII GRGCYC 2 cut(s) 17, 220
Bbv12I GWGCWC 1 cut(s) 17
BbvCI CCTCAGC 1 cut(s) 8
BbvI GCAGC 3 cut(s) 266, 928, 980
BccI CCATC 4 cut(s) 221, 611, 671, 715
BceAI ACGGC 1 cut(s) 1034
BciT130I CCWGG 2 cut(s) 325, 738
BcnI CCSGG 2 cut(s) 638, 695
BcoDI GTCTC 1 cut(s) 786
BfaI CTAG 2 cut(s) 575, 833
BfmI CTRYAG 1 cut(s) 345
BfoI RGCGCY 1 cut(s) 1050
BfrI CTTAAG 1 cut(s) 913
BglII AGATCT 2 cut(s) 1027, 1039
BisI GCNGC 3 cut(s) 255, 942, 969
BlsI GCNGC 3 cut(s) 256, 943, 970
Bme1390I CCNGG 4 cut(s) 325, 638, 695, 738
BmeT110I CYCGRG 1 cut(s) 370
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 4 cut(s) 37, 166, 743, 1048
BmrFI CCNGG 4 cut(s) 325, 638, 695, 738
BmrI ACTGGG 1 cut(s) 150
BmsI GCATC 2 cut(s) 56, 601
BmuI ACTGGG 1 cut(s) 150
Bpu10I CCTNAGC 1 cut(s) 8
BpuEI CTTGAG 1 cut(s) 933
BpuMI CCSGG 2 cut(s) 638, 695
BsaHI GRCGYC 1 cut(s) 1047
BsaI GGTCTC 1 cut(s) 786
BsaJI CCNNGG 6 cut(s) 324, 516, 637, 694, 737, 873
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 848
Bse1I ACTGG 4 cut(s) 26, 145, 249, 673
BseBI CCWGG 2 cut(s) 325, 738
BseDI CCNNGG 6 cut(s) 324, 516, 637, 694, 737, 873
BseGI GGATG 1 cut(s) 733
BseLI CCNNNNNNNGG 2 cut(s) 32, 848
BseMII CTCAG 2 cut(s) 69, 233
BseNI ACTGG 4 cut(s) 26, 145, 249, 673
BseRI GAGGAG 2 cut(s) 25, 719
BseXI GCAGC 3 cut(s) 266, 928, 980
BsgI GTGCAG 1 cut(s) 927
Bsh1236I CGCG 1 cut(s) 648
BshFI GGCC 3 cut(s) 145, 248, 636
BshNI GGYRCC 1 cut(s) 1046
BsiHKAI GWGCWC 1 cut(s) 17
BsiHKCI CYCGRG 1 cut(s) 370
BsiSI CCGG 2 cut(s) 637, 694
BslFI GGGAC 2 cut(s) 618, 1047
BslI CCNNNNNNNGG 2 cut(s) 32, 848
BsmAI GTCTC 1 cut(s) 786
BsmFI GGGAC 2 cut(s) 618, 1047
BsnI GGCC 3 cut(s) 145, 248, 636
Bso31I GGTCTC 1 cut(s) 786
BsoBI CYCGRG 1 cut(s) 370
Bsp1286I GDGCHC 2 cut(s) 17, 220
Bsp143I GATC 7 cut(s) 35, 190, 280, 320, 828, 1027, 1039
Bsp68I TCGCGA 1 cut(s) 648
BspACI CCGC 1 cut(s) 630
BspANI GGCC 3 cut(s) 145, 248, 636
BspCNI CTCAG 2 cut(s) 68, 232
BspFNI CGCG 1 cut(s) 648
BspHI TCATGA 2 cut(s) 1066, 1077
BspLI GGNNCC 4 cut(s) 37, 166, 743, 1048
BspPI GGATC 5 cut(s) 30, 43, 275, 315, 823
BspQI GCTCTTC 1 cut(s) 22
BspT107I GGYRCC 1 cut(s) 1046
BspTI CTTAAG 1 cut(s) 913
BspTNI GGTCTC 1 cut(s) 786
BsrI ACTGG 4 cut(s) 26, 145, 249, 673
BssECI CCNNGG 6 cut(s) 324, 516, 637, 694, 737, 873
BssMI GATC 7 cut(s) 35, 190, 280, 320, 828, 1027, 1039
BssNI GRCGYC 1 cut(s) 1047
BssT1I CCWWGG 1 cut(s) 873
Bst2UI CCWGG 2 cut(s) 325, 738
Bst4CI ACNGT 3 cut(s) 164, 336, 851
Bst6I CTCTTC 4 cut(s) 22, 414, 426, 483
BstACI GRCGYC 1 cut(s) 1047
BstAFI CTTAAG 1 cut(s) 913
BstAPI GCANNNNNTGC 1 cut(s) 869
BstC8I GCNNGC 1 cut(s) 979
BstDEI CTNAG 4 cut(s) 8, 55, 120, 219
BstF5I GGATG 1 cut(s) 733
BstFNI CGCG 1 cut(s) 648
BstH2I RGCGCY 1 cut(s) 1050
BstHHI GCGC 1 cut(s) 1049
BstKTI GATC 7 cut(s) 38, 193, 283, 323, 831, 1030, 1042
BstMAI GTCTC 1 cut(s) 786
BstMBI GATC 7 cut(s) 35, 190, 280, 320, 828, 1027, 1039
BstMWI GCNNNNNNNGC 4 cut(s) 254, 869, 938, 974
BstNI CCWGG 2 cut(s) 325, 738
BstSCI CCNGG 4 cut(s) 323, 636, 693, 736
BstSFI CTRYAG 1 cut(s) 345
BstUI CGCG 1 cut(s) 648
BstV1I GCAGC 3 cut(s) 266, 928, 980
BstX2I RGATCY 4 cut(s) 35, 320, 1027, 1039
BstYI RGATCY 4 cut(s) 35, 320, 1027, 1039
BsuRI GGCC 3 cut(s) 145, 248, 636
BtsCI GGATG 1 cut(s) 733
BtsIMutI CAGTG 1 cut(s) 666
BtuMI TCGCGA 1 cut(s) 648
Cac8I GCNNGC 1 cut(s) 979
CciI TCATGA 2 cut(s) 1066, 1077
CfoI GCGC 1 cut(s) 1049
Cfr13I GGNCC 1 cut(s) 143
CviAII CATG 8 cut(s) 272, 457, 523, 896, 959, 965, 1067, 1078
DdeI CTNAG 4 cut(s) 8, 55, 120, 219
DinI GGCGCC 1 cut(s) 1048
DpnI GATC 7 cut(s) 37, 192, 282, 322, 830, 1029, 1041
DpnII GATC 7 cut(s) 35, 190, 280, 320, 828, 1027, 1039
EaeI YGGCCR 1 cut(s) 634
Eam1104I CTCTTC 4 cut(s) 22, 414, 426, 483
EarI CTCTTC 4 cut(s) 22, 414, 426, 483
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 873
Eco24I GRGCYC 2 cut(s) 17, 220
Eco31I GGTCTC 1 cut(s) 786
Eco53kI GAGCTC 1 cut(s) 15
Eco57I CTGAAG 2 cut(s) 486, 1068
Eco88I CYCGRG 1 cut(s) 370
EcoICRI GAGCTC 1 cut(s) 15
EcoRII CCWGG 2 cut(s) 323, 736
EcoT14I CCWWGG 1 cut(s) 873
EcoT22I ATGCAT 1 cut(s) 594
EcoT38I GRGCYC 2 cut(s) 17, 220
EgeI GGCGCC 1 cut(s) 1048
EheI GGCGCC 1 cut(s) 1048
ErhI CCWWGG 1 cut(s) 873
FaeI CATG 8 cut(s) 275, 460, 526, 899, 962, 968, 1070, 1081
FaqI GGGAC 2 cut(s) 618, 1047
FatI CATG 8 cut(s) 271, 456, 522, 895, 958, 964, 1066, 1077
FblI GTMKAC 1 cut(s) 726
Fnu4HI GCNGC 3 cut(s) 255, 942, 969
FokI GGATG 1 cut(s) 720
FriOI GRGCYC 2 cut(s) 17, 220
Fsp4HI GCNGC 3 cut(s) 255, 942, 969
FspBI CTAG 2 cut(s) 575, 833
GlaI GCGC 1 cut(s) 1048
GluI GCNGC 3 cut(s) 255, 942, 969
HaeII RGCGCY 1 cut(s) 1050
HaeIII GGCC 3 cut(s) 145, 248, 636
HapII CCGG 2 cut(s) 637, 694
HhaI GCGC 1 cut(s) 1049
Hin1I GRCGYC 1 cut(s) 1047
Hin1II CATG 8 cut(s) 275, 460, 526, 899, 962, 968, 1070, 1081
Hin6I GCGC 1 cut(s) 1047
HinP1I GCGC 1 cut(s) 1047
HinfI GANTC 3 cut(s) 350, 453, 1074
HpaII CCGG 2 cut(s) 637, 694
HphI GGTGA 7 cut(s) 125, 162, 395, 482, 508, 517, 863
Hpy166II GTNNAC 2 cut(s) 68, 727
Hpy188I TCNGA 6 cut(s) 202, 213, 226, 517, 758, 783
Hpy188III TCNNGA 7 cut(s) 318, 372, 584, 647, 950, 1067, 1078
Hpy8I GTNNAC 2 cut(s) 68, 727
Hpy99I CGWCG 2 cut(s) 364, 851
HpyAV CCTTC 7 cut(s) 50, 233, 461, 487, 496, 806, 1064
HpyCH4III ACNGT 3 cut(s) 164, 336, 851
HpyCH4IV ACGT 1 cut(s) 362
HpyCH4V TGCA 9 cut(s) 47, 254, 340, 535, 592, 599, 892, 944, 968
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 869, 938, 974
HpyF3I CTNAG 4 cut(s) 8, 55, 120, 219
HpySE526I ACGT 1 cut(s) 362
Hsp92I GRCGYC 1 cut(s) 1047
Hsp92II CATG 8 cut(s) 275, 460, 526, 899, 962, 968, 1070, 1081
HspAI GCGC 1 cut(s) 1047
KasI GGCGCC 1 cut(s) 1046
Kzo9I GATC 7 cut(s) 35, 190, 280, 320, 828, 1027, 1039
LguI GCTCTTC 1 cut(s) 22
LmnI GCTCC 3 cut(s) 12, 374, 706
Lsp1109I GCAGC 3 cut(s) 266, 928, 980
LweI GCATC 2 cut(s) 56, 601
MaeI CTAG 2 cut(s) 575, 833
MaeII ACGT 1 cut(s) 362
MalI GATC 7 cut(s) 37, 192, 282, 322, 830, 1029, 1041
MboI GATC 7 cut(s) 35, 190, 280, 320, 828, 1027, 1039
MflI RGATCY 4 cut(s) 35, 320, 1027, 1039
MhlI GDGCHC 2 cut(s) 17, 220
MluCI AATT 5 cut(s) 410, 655, 760, 769, 855
Mly113I GGCGCC 1 cut(s) 1047
MlyI GAGTC 1 cut(s) 462
Mph1103I ATGCAT 1 cut(s) 594
MseI TTAA 2 cut(s) 654, 914
MslI CAYNNNNRTG 3 cut(s) 276, 897, 963
MspA1I CMGCKG 1 cut(s) 59
MspCI CTTAAG 1 cut(s) 913
MspI CCGG 2 cut(s) 637, 694
MspR9I CCNGG 4 cut(s) 325, 638, 695, 738
MvaI CCWGG 2 cut(s) 325, 738
MvnI CGCG 1 cut(s) 648
MwoI GCNNNNNNNGC 4 cut(s) 254, 869, 938, 974
NarI GGCGCC 1 cut(s) 1047
NciI CCSGG 2 cut(s) 638, 695
NdeII GATC 7 cut(s) 35, 190, 280, 320, 828, 1027, 1039
NlaIII CATG 8 cut(s) 275, 460, 526, 899, 962, 968, 1070, 1081
NlaIV GGNNCC 4 cut(s) 37, 166, 743, 1048
NruI TCGCGA 1 cut(s) 648
NsiI ATGCAT 1 cut(s) 594
PagI TCATGA 2 cut(s) 1066, 1077
PciSI GCTCTTC 1 cut(s) 22
PfeI GAWTC 2 cut(s) 350, 1074
PflMI CCANNNNNTGG 1 cut(s) 32
PkrI GCNGC 3 cut(s) 256, 943, 970
PleI GAGTC 1 cut(s) 461
PluTI GGCGCC 1 cut(s) 1050
PpsI GAGTC 1 cut(s) 461
Psp124BI GAGCTC 1 cut(s) 17
Psp6I CCWGG 2 cut(s) 323, 736
PspGI CCWGG 2 cut(s) 323, 736
PspN4I GGNNCC 4 cut(s) 37, 166, 743, 1048
PspPI GGNCC 1 cut(s) 143
PsuI RGATCY 4 cut(s) 35, 320, 1027, 1039
PvuII CAGCTG 1 cut(s) 59
RruI TCGCGA 1 cut(s) 648
RseI CAYNNNNRTG 3 cut(s) 276, 897, 963
SacI GAGCTC 1 cut(s) 17
SapI GCTCTTC 1 cut(s) 22
SaqAI TTAA 2 cut(s) 654, 914
SatI GCNGC 3 cut(s) 255, 942, 969
Sau3AI GATC 7 cut(s) 35, 190, 280, 320, 828, 1027, 1039
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 1 cut(s) 462
ScrFI CCNGG 4 cut(s) 325, 638, 695, 738
SduI GDGCHC 2 cut(s) 17, 220
SfaNI GCATC 2 cut(s) 56, 601
SfcI CTRYAG 1 cut(s) 345
SfoI GGCGCC 1 cut(s) 1048
SmiMI CAYNNNNRTG 3 cut(s) 276, 897, 963
SmlI CTYRAG 2 cut(s) 913, 948
SmoI CTYRAG 2 cut(s) 913, 948
Sse9I AATT 5 cut(s) 410, 655, 760, 769, 855
SsiI CCGC 1 cut(s) 630
SspDI GGCGCC 1 cut(s) 1046
SspMI CTAG 2 cut(s) 575, 833
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 4 cut(s) 323, 636, 693, 736
StyI CCWWGG 1 cut(s) 873
TaaI ACNGT 3 cut(s) 164, 336, 851
TaiI ACGT 1 cut(s) 365
TaqI TCGA 4 cut(s) 317, 359, 583, 827
TasI AATT 5 cut(s) 410, 655, 760, 769, 855
TfiI GAWTC 2 cut(s) 350, 1074
Tru1I TTAA 2 cut(s) 654, 914
Tru9I TTAA 2 cut(s) 654, 914
TscAI CASTG 1 cut(s) 673
TseI GCWGC 3 cut(s) 254, 941, 968
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 1 cut(s) 673
Van91I CCANNNNNTGG 1 cut(s) 32
Vha464I CTTAAG 1 cut(s) 913
XapI RAATTY 2 cut(s) 410, 855
XmiI GTMKAC 1 cut(s) 726
XspI CTAG 2 cut(s) 575, 833
Zsp2I ATGCAT 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.