Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0012577

Physical Location & Seq

Genomic Coordinates Forward (+)

48690910 .. 48692169

Gene Structure 1260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G025350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTTGCTGAGGAGCTCTTCAACACCAGTTATTGGAACCCTTCTTGCCTCATTCTCATCTGAAAGTCCACTTGGCAATCACTTTGAACCAAAACCAACCTCAATCCACCACACTCCCACTAAGTTTTCATTTCACCAAACTGGGCCTCTCAACATCTCACACTGTTCCTCACCAATCTCTCCCTCCATTGATCTTTCCTCCGGGTTTCTTCGGAGGGCTCAGTCTGATGGAAACTTGCAAGGACTGGCCTATGCAGCTTCTTGTGATAAACATGAAGATGATCCGTTCTTCTGTGATTTATACCAACCCAACAAGTCGAGATCCAGGGGAATACCGTTGCAAACTATAGATTCTTTTTCGACCTATAACTCGGGAGCTTTGGGTGAAGATGAAGAAGATAGTGATAGGGAATTTGATGAAGAGGTTGAGGAAAGTGAGAGAGTCAGGGCTATTGAAGGTGATAGTGTTGGTTTGGAAGAGAAGGTGAGGAAGGTGGGTTTATCCGAGGACATGAGAACTATGCAGAAAATGTGGGGTGGGGGTTATGAAGAACAAAGAGAGCTAGAAAGTCGAGAAATTCATCTTGCAAAGGGACTTGGGATTGGTGGTGGAAGTGGCGGTGGCCGGGGTGGTCACGAGGCTAATTGGGAAAGCACTGGTGGAGATGGAGATGACAACAACCAGGGGGTTGAGGAGCATTACAAAAAGATGGTAGACGAACATCCTGGGAACCCATTGTTTCTCGGAAATTATGCTAATTTTTTGTATCAGACCAAGAGAGACCTTCCTTTAGCAGAGGAATACTACTCTCGTTCGATCCTAGCAGACCCAAACGACGGTGAAATTTTGGCACAATATGCCAAGGTAGTATGGGAGTTGCACCATGATGGAGATAGAGCCTTAAGCTACTATGAACGAGCAGTCCAAGCTGCACCTCAAGATAGCTATGTCCATGCAGCATACGCTGGCTTCCTATGGGAAACAGAGGAAGATGAAGCAGATCTGGGACAAGATCTTGGCGCCATGTCGCCATATATTCATGAAGGAATCATGACTTCTGCAAGCGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_19

Protein Analysis

356

Amino Acids

39.24

Weight (kDa)

4.64

Isoelectric Point (pI)

61.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012577)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20530 FvH4_2g20530 FvH4_2g20530 FvH4_2g20530 FvH4_2g20530
malus_domestica	MD05G1189100.v1.1
prunus_persica	Prupe.8G215700_v2.0.a1 Prupe.8G215700_v2.0.a1
pyrus_communis	pycom05g17370
rosa_chinensis	RchiOBHm_Chr6g0286691
rosa_laevigata	RLG00000012552
rosa_multiflora	Rmu_sc0007546.1_g000002
rosa_roxburghii	Rroxscaffold_7G00182110
rosa_rugosa	Rorug06G0181900
rosa_samantha	Rh6AG294800 Rh6BG297900 Rh6CG298400 Rh6DG290400
rosa_wichuraiana	Rw6G025350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1019
AccB7I	CCANNNNNTGG	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	714
AciI	CCGC	1 cut(s)	618
AclWI	GGATC	3 cut(s)	275, 315, 811
AcoI	YGGCCR	1 cut(s)	622
AcsI	RAATTY	3 cut(s)	410, 576, 843
AcyI	GRCGYC	1 cut(s)	1020
AfiI	CCNNNNNNNGG	2 cut(s)	32, 836
AflII	CTTAAG	1 cut(s)	901
AgsI	TTSAA	3 cut(s)	21, 86, 455
AjnI	CCWGG	3 cut(s)	323, 681, 724
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AloI	GAACNNNNNNTCC	2 cut(s)	906, 938
AluBI	AGCT	7 cut(s)	15, 257, 377, 562, 906, 929, 945
AluI	AGCT	7 cut(s)	15, 257, 377, 562, 906, 929, 945
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	774
AlwI	GGATC	3 cut(s)	275, 315, 811
Ama87I	CYCGRG	1 cut(s)	370
AoxI	GGCC	3 cut(s)	143, 246, 622
ApeKI	GCWGC	3 cut(s)	254, 929, 956
ApoI	RAATTY	3 cut(s)	410, 576, 843
AspLEI	GCGC	2 cut(s)	1022, 1067
AspS9I	GGNCC	1 cut(s)	143
AsuC2I	CCSGG	2 cut(s)	202, 626
AsuHPI	GGTGA	6 cut(s)	125, 162, 395, 470, 496, 851
AvaI	CYCGRG	1 cut(s)	370
BanI	GGYRCC	1 cut(s)	1019
BanII	GRGCYC	2 cut(s)	17, 220
BauI	CACGAG	1 cut(s)	635
Bbv12I	GWGCWC	1 cut(s)	17
BbvCI	CCTCAGC	1 cut(s)	8
BbvI	GCAGC	3 cut(s)	266, 916, 968
BccI	CCATC	4 cut(s)	221, 659, 703, 881
BciT130I	CCWGG	3 cut(s)	325, 683, 726
BcnI	CCSGG	2 cut(s)	202, 626
BcoDI	GTCTC	1 cut(s)	774
BfaI	CTAG	2 cut(s)	563, 821
BfmI	CTRYAG	1 cut(s)	345
BfoI	RGCGCY	2 cut(s)	1023, 1068
BfrI	CTTAAG	1 cut(s)	901
BglII	AGATCT	2 cut(s)	1000, 1012
BisI	GCNGC	3 cut(s)	255, 930, 957
BlsI	GCNGC	3 cut(s)	256, 931, 958
Bme1390I	CCNGG	5 cut(s)	202, 325, 626, 683, 726
BmeT110I	CYCGRG	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	3 cut(s)	37, 731, 1021
BmrFI	CCNGG	5 cut(s)	202, 325, 626, 683, 726
BmrI	ACTGGG	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	921
BpuMI	CCSGG	2 cut(s)	202, 626
BsaHI	GRCGYC	1 cut(s)	1020
BsaI	GGTCTC	1 cut(s)	774
BsaJI	CCNNGG	6 cut(s)	324, 504, 625, 682, 725, 861
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 836
Bse1I	ACTGG	4 cut(s)	26, 145, 249, 661
BseBI	CCWGG	3 cut(s)	325, 683, 726
BseDI	CCNNGG	6 cut(s)	324, 504, 625, 682, 725, 861
BseGI	GGATG	1 cut(s)	721
BseLI	CCNNNNNNNGG	2 cut(s)	32, 836
BseMII	CTCAG	1 cut(s)	233
BseNI	ACTGG	4 cut(s)	26, 145, 249, 661
BseRI	GAGGAG	2 cut(s)	25, 707
BseXI	GCAGC	3 cut(s)	266, 916, 968
BsgI	GTGCAG	1 cut(s)	915
BshFI	GGCC	3 cut(s)	145, 248, 624
BshNI	GGYRCC	1 cut(s)	1019
BsiHKAI	GWGCWC	1 cut(s)	17
BsiHKCI	CYCGRG	1 cut(s)	370
BsiSI	CCGG	2 cut(s)	201, 625
BslFI	GGGAC	2 cut(s)	606, 1020
BslI	CCNNNNNNNGG	2 cut(s)	32, 836
BsmAI	GTCTC	1 cut(s)	774
BsmFI	GGGAC	2 cut(s)	606, 1020
BsnI	GGCC	3 cut(s)	145, 248, 624
Bso31I	GGTCTC	1 cut(s)	774
BsoBI	CYCGRG	1 cut(s)	370
Bsp1286I	GDGCHC	2 cut(s)	17, 220
Bsp143I	GATC	6 cut(s)	190, 280, 320, 816, 1000, 1012
BspACI	CCGC	1 cut(s)	618
BspANI	GGCC	3 cut(s)	145, 248, 624
BspCNI	CTCAG	1 cut(s)	232
BspHI	TCATGA	2 cut(s)	1039, 1050
BspLI	GGNNCC	3 cut(s)	37, 731, 1021
BspPI	GGATC	3 cut(s)	275, 315, 811
BspQI	GCTCTTC	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	1019
BspTI	CTTAAG	1 cut(s)	901
BspTNI	GGTCTC	1 cut(s)	774
BsrI	ACTGG	4 cut(s)	26, 145, 249, 661
BssECI	CCNNGG	6 cut(s)	324, 504, 625, 682, 725, 861
BssMI	GATC	6 cut(s)	190, 280, 320, 816, 1000, 1012
BssNI	GRCGYC	1 cut(s)	1020
BssSI	CACGAG	1 cut(s)	635
BssT1I	CCWWGG	1 cut(s)	861
Bst2BI	CACGAG	1 cut(s)	635
Bst2UI	CCWGG	3 cut(s)	325, 683, 726
Bst4CI	ACNGT	3 cut(s)	164, 336, 839
Bst6I	CTCTTC	3 cut(s)	22, 414, 471
BstACI	GRCGYC	1 cut(s)	1020
BstAFI	CTTAAG	1 cut(s)	901
BstAPI	GCANNNNNTGC	1 cut(s)	857
BstC8I	GCNNGC	2 cut(s)	967, 1063
BstDEI	CTNAG	3 cut(s)	8, 120, 219
BstF5I	GGATG	1 cut(s)	721
BstH2I	RGCGCY	2 cut(s)	1023, 1068
BstHHI	GCGC	2 cut(s)	1022, 1067
BstKTI	GATC	6 cut(s)	193, 283, 323, 819, 1003, 1015
BstMAI	GTCTC	1 cut(s)	774
BstMBI	GATC	6 cut(s)	190, 280, 320, 816, 1000, 1012
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 857, 926, 962
BstNI	CCWGG	3 cut(s)	325, 683, 726
BstSCI	CCNGG	5 cut(s)	200, 323, 624, 681, 724
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	3 cut(s)	266, 916, 968
BstX2I	RGATCY	3 cut(s)	320, 1000, 1012
BstYI	RGATCY	3 cut(s)	320, 1000, 1012
BsuRI	GGCC	3 cut(s)	145, 248, 624
BtsCI	GGATG	1 cut(s)	721
BtsIMutI	CAGTG	2 cut(s)	160, 654
Cac8I	GCNNGC	2 cut(s)	967, 1063
CciI	TCATGA	2 cut(s)	1039, 1050
CfoI	GCGC	2 cut(s)	1022, 1067
Cfr13I	GGNCC	1 cut(s)	143
CviAII	CATG	7 cut(s)	272, 511, 884, 953, 1024, 1040, 1051
DdeI	CTNAG	3 cut(s)	8, 120, 219
DinI	GGCGCC	1 cut(s)	1021
DpnI	GATC	6 cut(s)	192, 282, 322, 818, 1002, 1014
DpnII	GATC	6 cut(s)	190, 280, 320, 816, 1000, 1012
EaeI	YGGCCR	1 cut(s)	622
Eam1104I	CTCTTC	3 cut(s)	22, 414, 471
EarI	CTCTTC	3 cut(s)	22, 414, 471
Ecl136II	GAGCTC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	861
Eco24I	GRGCYC	2 cut(s)	17, 220
Eco31I	GGTCTC	1 cut(s)	774
Eco53kI	GAGCTC	1 cut(s)	15
Eco88I	CYCGRG	1 cut(s)	370
EcoICRI	GAGCTC	1 cut(s)	15
EcoRII	CCWGG	3 cut(s)	323, 681, 724
EcoT14I	CCWWGG	1 cut(s)	861
EcoT38I	GRGCYC	2 cut(s)	17, 220
EgeI	GGCGCC	1 cut(s)	1021
EheI	GGCGCC	1 cut(s)	1021
ErhI	CCWWGG	1 cut(s)	861
FaeI	CATG	7 cut(s)	275, 514, 887, 956, 1027, 1043, 1054
FaqI	GGGAC	2 cut(s)	606, 1020
FatI	CATG	7 cut(s)	271, 510, 883, 952, 1023, 1039, 1050
FblI	GTMKAC	1 cut(s)	714
Fnu4HI	GCNGC	3 cut(s)	255, 930, 957
FokI	GGATG	1 cut(s)	708
FriOI	GRGCYC	2 cut(s)	17, 220
Fsp4HI	GCNGC	3 cut(s)	255, 930, 957
FspBI	CTAG	2 cut(s)	563, 821
GlaI	GCGC	2 cut(s)	1021, 1066
GluI	GCNGC	3 cut(s)	255, 930, 957
HaeII	RGCGCY	2 cut(s)	1023, 1068
HaeIII	GGCC	3 cut(s)	145, 248, 624
HapII	CCGG	2 cut(s)	201, 625
HhaI	GCGC	2 cut(s)	1022, 1067
Hin1I	GRCGYC	1 cut(s)	1020
Hin1II	CATG	7 cut(s)	275, 514, 887, 956, 1027, 1043, 1054
Hin6I	GCGC	2 cut(s)	1020, 1065
HinP1I	GCGC	2 cut(s)	1020, 1065
HinfI	GANTC	3 cut(s)	350, 441, 1047
HpaII	CCGG	2 cut(s)	201, 625
HphI	GGTGA	6 cut(s)	125, 162, 395, 470, 496, 851
Hpy166II	GTNNAC	2 cut(s)	68, 715
Hpy188I	TCNGA	6 cut(s)	61, 213, 226, 505, 746, 771
Hpy188III	TCNNGA	7 cut(s)	318, 372, 572, 635, 938, 1040, 1051
Hpy8I	GTNNAC	2 cut(s)	68, 715
Hpy99I	CGWCG	1 cut(s)	839
HpyAV	CCTTC	6 cut(s)	50, 449, 475, 484, 794, 1037
HpyCH4III	ACNGT	3 cut(s)	164, 336, 839
HpyCH4V	TGCA	9 cut(s)	238, 254, 340, 523, 587, 880, 932, 956, 1061
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 857, 926, 962
HpyF3I	CTNAG	3 cut(s)	8, 120, 219
Hsp92I	GRCGYC	1 cut(s)	1020
Hsp92II	CATG	7 cut(s)	275, 514, 887, 956, 1027, 1043, 1054
HspAI	GCGC	2 cut(s)	1020, 1065
KasI	GGCGCC	1 cut(s)	1019
Kzo9I	GATC	6 cut(s)	190, 280, 320, 816, 1000, 1012
LguI	GCTCTTC	1 cut(s)	22
LmnI	GCTCC	3 cut(s)	12, 374, 694
Lsp1109I	GCAGC	3 cut(s)	266, 916, 968
MaeI	CTAG	2 cut(s)	563, 821
MaeIII	GTNAC	1 cut(s)	632
MalI	GATC	6 cut(s)	192, 282, 322, 818, 1002, 1014
MboI	GATC	6 cut(s)	190, 280, 320, 816, 1000, 1012
MflI	RGATCY	3 cut(s)	320, 1000, 1012
MhlI	GDGCHC	2 cut(s)	17, 220
MluCI	AATT	6 cut(s)	410, 576, 643, 748, 757, 843
Mly113I	GGCGCC	1 cut(s)	1020
MlyI	GAGTC	1 cut(s)	450
MseI	TTAA	1 cut(s)	902
MslI	CAYNNNNRTG	2 cut(s)	276, 885
MspCI	CTTAAG	1 cut(s)	901
MspI	CCGG	2 cut(s)	201, 625
MspR9I	CCNGG	5 cut(s)	202, 325, 626, 683, 726
MvaI	CCWGG	3 cut(s)	325, 683, 726
MwoI	GCNNNNNNNGC	4 cut(s)	254, 857, 926, 962
NarI	GGCGCC	1 cut(s)	1020
NciI	CCSGG	2 cut(s)	202, 626
NdeII	GATC	6 cut(s)	190, 280, 320, 816, 1000, 1012
NlaIII	CATG	7 cut(s)	275, 514, 887, 956, 1027, 1043, 1054
NlaIV	GGNNCC	3 cut(s)	37, 731, 1021
NmuCI	GTSAC	1 cut(s)	632
PagI	TCATGA	2 cut(s)	1039, 1050
PciSI	GCTCTTC	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	350, 1047
PflMI	CCANNNNNTGG	1 cut(s)	32
PkrI	GCNGC	3 cut(s)	256, 931, 958
PleI	GAGTC	1 cut(s)	449
PluTI	GGCGCC	1 cut(s)	1023
PpsI	GAGTC	1 cut(s)	449
Psp124BI	GAGCTC	1 cut(s)	17
Psp6I	CCWGG	3 cut(s)	323, 681, 724
PspGI	CCWGG	3 cut(s)	323, 681, 724
PspN4I	GGNNCC	3 cut(s)	37, 731, 1021
PspPI	GGNCC	1 cut(s)	143
PsuI	RGATCY	3 cut(s)	320, 1000, 1012
RseI	CAYNNNNRTG	2 cut(s)	276, 885
SacI	GAGCTC	1 cut(s)	17
SapI	GCTCTTC	1 cut(s)	22
SaqAI	TTAA	1 cut(s)	902
SatI	GCNGC	3 cut(s)	255, 930, 957
Sau3AI	GATC	6 cut(s)	190, 280, 320, 816, 1000, 1012
Sau96I	GGNCC	1 cut(s)	143
SchI	GAGTC	1 cut(s)	450
ScrFI	CCNGG	5 cut(s)	202, 325, 626, 683, 726
SduI	GDGCHC	2 cut(s)	17, 220
SfcI	CTRYAG	1 cut(s)	345
SfoI	GGCGCC	1 cut(s)	1021
SmiMI	CAYNNNNRTG	2 cut(s)	276, 885
SmlI	CTYRAG	2 cut(s)	901, 936
SmoI	CTYRAG	2 cut(s)	901, 936
Sse9I	AATT	6 cut(s)	410, 576, 643, 748, 757, 843
SsiI	CCGC	1 cut(s)	618
SspDI	GGCGCC	1 cut(s)	1019
SspMI	CTAG	2 cut(s)	563, 821
SstI	GAGCTC	1 cut(s)	17
StyD4I	CCNGG	5 cut(s)	200, 323, 624, 681, 724
StyI	CCWWGG	1 cut(s)	861
TaaI	ACNGT	3 cut(s)	164, 336, 839
TaqI	TCGA	4 cut(s)	317, 359, 571, 815
TasI	AATT	6 cut(s)	410, 576, 643, 748, 757, 843
TfiI	GAWTC	2 cut(s)	350, 1047
Tru1I	TTAA	1 cut(s)	902
Tru9I	TTAA	1 cut(s)	902
TscAI	CASTG	2 cut(s)	167, 661
TseFI	GTSAC	1 cut(s)	632
TseI	GCWGC	3 cut(s)	254, 929, 956
Tsp45I	GTSAC	1 cut(s)	632
TspGWI	ACGGA	1 cut(s)	273
TspRI	CASTG	2 cut(s)	167, 661
Van91I	CCANNNNNTGG	1 cut(s)	32
Vha464I	CTTAAG	1 cut(s)	901
XapI	RAATTY	3 cut(s)	410, 576, 843
XmiI	GTMKAC	1 cut(s)	714
XspI	CTAG	2 cut(s)	563, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.