Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0012577

Physical Location & Seq

Genomic Coordinates Forward (+)

52759185 .. 52761907

Gene Structure 2723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG297900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTTGCTGAGGAGCTCTTCAACACCAGTTATTGGATCCCTTCTTGCATCATTCTCAGCTGAAAGTCCACTTGGCAATCACTTTGAACCAAAACCAACCTCAATCCACCACACTCCCACTAAGTTTTCATTTCACCAAACTGGGCCTCTCAACATCTCACACTGTTCCTCACCAATCTCTCCCTCCATTGATCTTTCCTCCGGCTTTCTTCGGAGGGCTCAGTCAGATGGAAACTTGCAAGGACTGGCCTATGCAGCTTCTTGTGATAAACATGAAGATGATCCGTTCTTCTGTGATTTATACCAACCCAACAAGTCGAGATCCAGGGGAACACCGTTGCAAACTATAGATTCTTTTTCGACCTATAACTCGGGAGCTTTGGGTGAAGATGAGGAAGATAGTGATAGGGAATTTGATGAAGAGGTTGAGGAAAGTGAGAGAATCATGGCTATTGAAGGTGATAGTGATGGTTTGGAAGAGAAGGTGAGGAAGGTGAGTTTATCCGAGGACTTGAGAACTATGCAGAAAATGTGGGGTGGGGGTTATGAAGAACAAAGAGAGCTAGAAAGTCGAGAAATTCATCTTGCAAAGGGACTTGGGATTGGTGGTGGAAGTGGCGGTGGCCGGGGTGGTCACGAGGCTAATTGGGAAAGCACTGGTGGAGATGGAGATGACAACAACCAGGGGGTTGAGGAGCATTACAAAAAGATGGTAGACGAACATCCTGGGAACCCATTGTTTCTCGGAAATTATGCTAATTTTTTGTATCAGACCAAGAGAGACCTTCCTTTAGCAGAGGAATACTACTCTCGTTCGATCCTAGCAGACCCAAACGACGGTGTAATTTTGGCACAATATGCCAAGGTTGTATGGGAGTTGCACCATGATGAAGATAGAGCCTTACGCTACTATGAACGAGCAGTCCAAGCTGCACCTCAAGATAGGTATGTGATATCATTGGTTGAAATAGAGAGTTTCAGTGTTCTATCCTTTTTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_19

Protein Analysis

333

Amino Acids

37.02

Weight (kDa)

4.73

Isoelectric Point (pI)

61.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012577)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20530 FvH4_2g20530 FvH4_2g20530 FvH4_2g20530 FvH4_2g20530
malus_domestica	MD05G1189100.v1.1
prunus_persica	Prupe.8G215700_v2.0.a1 Prupe.8G215700_v2.0.a1
pyrus_communis	pycom05g17370
rosa_chinensis	RchiOBHm_Chr6g0286691
rosa_laevigata	RLG00000012552
rosa_multiflora	Rmu_sc0007546.1_g000002
rosa_roxburghii	Rroxscaffold_7G00182110
rosa_rugosa	Rorug06G0181900
rosa_samantha	Rh6AG294800 Rh6BG297900 Rh6CG298400 Rh6DG290400
rosa_wichuraiana	Rw6G025350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	714
AciI	CCGC	1 cut(s)	618
AclWI	GGATC	5 cut(s)	30, 43, 275, 315, 811
AcoI	YGGCCR	1 cut(s)	622
AcsI	RAATTY	2 cut(s)	410, 576
AfiI	CCNNNNNNNGG	2 cut(s)	32, 836
AgsI	TTSAA	4 cut(s)	21, 86, 455, 965
AjnI	CCWGG	3 cut(s)	323, 681, 724
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AloI	GAACNNNNNNTCC	2 cut(s)	906, 938
AluBI	AGCT	6 cut(s)	15, 59, 257, 377, 562, 929
AluI	AGCT	6 cut(s)	15, 59, 257, 377, 562, 929
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	774
AlwI	GGATC	5 cut(s)	30, 43, 275, 315, 811
Ama87I	CYCGRG	1 cut(s)	370
AoxI	GGCC	3 cut(s)	143, 246, 622
ApeKI	GCWGC	2 cut(s)	254, 929
ApoI	RAATTY	2 cut(s)	410, 576
AspS9I	GGNCC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	626
AsuHPI	GGTGA	6 cut(s)	125, 162, 395, 470, 496, 505
AvaI	CYCGRG	1 cut(s)	370
BamHI	GGATCC	1 cut(s)	35
BanII	GRGCYC	2 cut(s)	17, 220
BauI	CACGAG	1 cut(s)	635
Bbv12I	GWGCWC	1 cut(s)	17
BbvCI	CCTCAGC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	266, 916
BccI	CCATC	4 cut(s)	221, 461, 659, 703
BciT130I	CCWGG	3 cut(s)	325, 683, 726
BcnI	CCSGG	1 cut(s)	626
BcoDI	GTCTC	1 cut(s)	774
BfaI	CTAG	2 cut(s)	563, 821
BfmI	CTRYAG	1 cut(s)	345
BisI	GCNGC	2 cut(s)	255, 930
BlsI	GCNGC	2 cut(s)	256, 931
Bme1390I	CCNGG	4 cut(s)	325, 626, 683, 726
BmeT110I	CYCGRG	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	2 cut(s)	37, 731
BmrFI	CCNGG	4 cut(s)	325, 626, 683, 726
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	56
BmuI	ACTGGG	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	8
BpuEI	CTTGAG	2 cut(s)	532, 921
BpuMI	CCSGG	1 cut(s)	626
BsaI	GGTCTC	1 cut(s)	774
BsaJI	CCNNGG	6 cut(s)	324, 504, 625, 682, 725, 861
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 836
Bse1I	ACTGG	4 cut(s)	26, 145, 249, 661
BseBI	CCWGG	3 cut(s)	325, 683, 726
BseDI	CCNNGG	6 cut(s)	324, 504, 625, 682, 725, 861
BseGI	GGATG	1 cut(s)	721
BseLI	CCNNNNNNNGG	2 cut(s)	32, 836
BseMII	CTCAG	2 cut(s)	69, 233
BseNI	ACTGG	4 cut(s)	26, 145, 249, 661
BseRI	GAGGAG	2 cut(s)	25, 707
BseXI	GCAGC	2 cut(s)	266, 916
BsgI	GTGCAG	1 cut(s)	915
BshFI	GGCC	3 cut(s)	145, 248, 624
BsiHKAI	GWGCWC	1 cut(s)	17
BsiHKCI	CYCGRG	1 cut(s)	370
BsiSI	CCGG	2 cut(s)	201, 625
BslFI	GGGAC	1 cut(s)	606
BslI	CCNNNNNNNGG	2 cut(s)	32, 836
BsmAI	GTCTC	1 cut(s)	774
BsmFI	GGGAC	1 cut(s)	606
BsnI	GGCC	3 cut(s)	145, 248, 624
Bso31I	GGTCTC	1 cut(s)	774
BsoBI	CYCGRG	1 cut(s)	370
Bsp1286I	GDGCHC	2 cut(s)	17, 220
Bsp143I	GATC	5 cut(s)	35, 190, 280, 320, 816
BspACI	CCGC	1 cut(s)	618
BspANI	GGCC	3 cut(s)	145, 248, 624
BspCNI	CTCAG	2 cut(s)	68, 232
BspLI	GGNNCC	2 cut(s)	37, 731
BspPI	GGATC	5 cut(s)	30, 43, 275, 315, 811
BspQI	GCTCTTC	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	774
BsrI	ACTGG	4 cut(s)	26, 145, 249, 661
BssECI	CCNNGG	6 cut(s)	324, 504, 625, 682, 725, 861
BssMI	GATC	5 cut(s)	35, 190, 280, 320, 816
BssSI	CACGAG	1 cut(s)	635
BssT1I	CCWWGG	1 cut(s)	861
Bst2BI	CACGAG	1 cut(s)	635
Bst2UI	CCWGG	3 cut(s)	325, 683, 726
Bst4CI	ACNGT	3 cut(s)	164, 336, 839
Bst6I	CTCTTC	3 cut(s)	22, 414, 471
BstAPI	GCANNNNNTGC	1 cut(s)	857
BstDEI	CTNAG	4 cut(s)	8, 55, 120, 219
BstF5I	GGATG	1 cut(s)	721
BstKTI	GATC	5 cut(s)	38, 193, 283, 323, 819
BstMAI	GTCTC	1 cut(s)	774
BstMBI	GATC	5 cut(s)	35, 190, 280, 320, 816
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 857, 926
BstNI	CCWGG	3 cut(s)	325, 683, 726
BstSCI	CCNGG	4 cut(s)	323, 624, 681, 724
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	266, 916
BstX2I	RGATCY	2 cut(s)	35, 320
BstYI	RGATCY	2 cut(s)	35, 320
BsuRI	GGCC	3 cut(s)	145, 248, 624
BtsCI	GGATG	1 cut(s)	721
BtsIMutI	CAGTG	3 cut(s)	160, 654, 985
Cfr13I	GGNCC	1 cut(s)	143
CviAII	CATG	3 cut(s)	272, 445, 884
DdeI	CTNAG	4 cut(s)	8, 55, 120, 219
DpnI	GATC	5 cut(s)	37, 192, 282, 322, 818
DpnII	GATC	5 cut(s)	35, 190, 280, 320, 816
EaeI	YGGCCR	1 cut(s)	622
Eam1104I	CTCTTC	3 cut(s)	22, 414, 471
EarI	CTCTTC	3 cut(s)	22, 414, 471
Ecl136II	GAGCTC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	861
Eco24I	GRGCYC	2 cut(s)	17, 220
Eco31I	GGTCTC	1 cut(s)	774
Eco32I	GATATC	1 cut(s)	954
Eco53kI	GAGCTC	1 cut(s)	15
Eco88I	CYCGRG	1 cut(s)	370
EcoICRI	GAGCTC	1 cut(s)	15
EcoRII	CCWGG	3 cut(s)	323, 681, 724
EcoRV	GATATC	1 cut(s)	954
EcoT14I	CCWWGG	1 cut(s)	861
EcoT38I	GRGCYC	2 cut(s)	17, 220
ErhI	CCWWGG	1 cut(s)	861
FaeI	CATG	3 cut(s)	275, 448, 887
FaqI	GGGAC	1 cut(s)	606
FatI	CATG	3 cut(s)	271, 444, 883
FblI	GTMKAC	1 cut(s)	714
Fnu4HI	GCNGC	2 cut(s)	255, 930
FokI	GGATG	1 cut(s)	708
FriOI	GRGCYC	2 cut(s)	17, 220
Fsp4HI	GCNGC	2 cut(s)	255, 930
FspBI	CTAG	2 cut(s)	563, 821
GluI	GCNGC	2 cut(s)	255, 930
HaeIII	GGCC	3 cut(s)	145, 248, 624
HapII	CCGG	2 cut(s)	201, 625
Hin1II	CATG	3 cut(s)	275, 448, 887
HinfI	GANTC	2 cut(s)	350, 441
HpaII	CCGG	2 cut(s)	201, 625
HphI	GGTGA	6 cut(s)	125, 162, 395, 470, 496, 505
Hpy166II	GTNNAC	2 cut(s)	68, 715
Hpy188I	TCNGA	5 cut(s)	213, 226, 505, 746, 771
Hpy188III	TCNNGA	5 cut(s)	318, 372, 572, 635, 938
Hpy8I	GTNNAC	2 cut(s)	68, 715
Hpy99I	CGWCG	1 cut(s)	839
HpyAV	CCTTC	5 cut(s)	50, 449, 475, 484, 794
HpyCH4III	ACNGT	3 cut(s)	164, 336, 839
HpyCH4V	TGCA	8 cut(s)	47, 238, 254, 340, 523, 587, 880, 932
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 857, 926
HpyF3I	CTNAG	4 cut(s)	8, 55, 120, 219
Hsp92II	CATG	3 cut(s)	275, 448, 887
Kzo9I	GATC	5 cut(s)	35, 190, 280, 320, 816
LguI	GCTCTTC	1 cut(s)	22
LmnI	GCTCC	3 cut(s)	12, 374, 694
Lsp1109I	GCAGC	2 cut(s)	266, 916
LweI	GCATC	1 cut(s)	56
MaeI	CTAG	2 cut(s)	563, 821
MaeIII	GTNAC	1 cut(s)	632
MalI	GATC	5 cut(s)	37, 192, 282, 322, 818
MboI	GATC	5 cut(s)	35, 190, 280, 320, 816
MflI	RGATCY	2 cut(s)	35, 320
MhlI	GDGCHC	2 cut(s)	17, 220
MluCI	AATT	6 cut(s)	410, 576, 643, 748, 757, 843
MslI	CAYNNNNRTG	2 cut(s)	276, 885
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	2 cut(s)	201, 625
MspR9I	CCNGG	4 cut(s)	325, 626, 683, 726
MvaI	CCWGG	3 cut(s)	325, 683, 726
MwoI	GCNNNNNNNGC	3 cut(s)	254, 857, 926
NciI	CCSGG	1 cut(s)	626
NdeII	GATC	5 cut(s)	35, 190, 280, 320, 816
NlaIII	CATG	3 cut(s)	275, 448, 887
NlaIV	GGNNCC	2 cut(s)	37, 731
NmuCI	GTSAC	1 cut(s)	632
PciSI	GCTCTTC	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	350, 441
PflMI	CCANNNNNTGG	1 cut(s)	32
PkrI	GCNGC	2 cut(s)	256, 931
Psp124BI	GAGCTC	1 cut(s)	17
Psp6I	CCWGG	3 cut(s)	323, 681, 724
PspGI	CCWGG	3 cut(s)	323, 681, 724
PspN4I	GGNNCC	2 cut(s)	37, 731
PspPI	GGNCC	1 cut(s)	143
PsuI	RGATCY	2 cut(s)	35, 320
PvuII	CAGCTG	1 cut(s)	59
RseI	CAYNNNNRTG	2 cut(s)	276, 885
SacI	GAGCTC	1 cut(s)	17
SapI	GCTCTTC	1 cut(s)	22
SatI	GCNGC	2 cut(s)	255, 930
Sau3AI	GATC	5 cut(s)	35, 190, 280, 320, 816
Sau96I	GGNCC	1 cut(s)	143
ScrFI	CCNGG	4 cut(s)	325, 626, 683, 726
SduI	GDGCHC	2 cut(s)	17, 220
SfaNI	GCATC	1 cut(s)	56
SfcI	CTRYAG	1 cut(s)	345
SmiMI	CAYNNNNRTG	2 cut(s)	276, 885
SmlI	CTYRAG	2 cut(s)	511, 936
SmoI	CTYRAG	2 cut(s)	511, 936
Sse9I	AATT	6 cut(s)	410, 576, 643, 748, 757, 843
SsiI	CCGC	1 cut(s)	618
SspMI	CTAG	2 cut(s)	563, 821
SstI	GAGCTC	1 cut(s)	17
StyD4I	CCNGG	4 cut(s)	323, 624, 681, 724
StyI	CCWWGG	1 cut(s)	861
TaaI	ACNGT	3 cut(s)	164, 336, 839
TaqI	TCGA	4 cut(s)	317, 359, 571, 815
TasI	AATT	6 cut(s)	410, 576, 643, 748, 757, 843
TfiI	GAWTC	2 cut(s)	350, 441
TscAI	CASTG	3 cut(s)	167, 661, 985
TseFI	GTSAC	1 cut(s)	632
TseI	GCWGC	2 cut(s)	254, 929
Tsp45I	GTSAC	1 cut(s)	632
TspDTI	ATGAA	7 cut(s)	117, 288, 432, 561, 569, 903, 927
TspGWI	ACGGA	1 cut(s)	273
TspRI	CASTG	3 cut(s)	167, 661, 985
Van91I	CCANNNNNTGG	1 cut(s)	32
XapI	RAATTY	2 cut(s)	410, 576
XmiI	GTMKAC	1 cut(s)	714
XspI	CTAG	2 cut(s)	563, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.