Rorug06G0181900

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
28668789 .. 28669530
742 bp
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UTR
Exon/CDS
Intron
Rorug06G0181900.1

Sequence Viewer

Length: 219 bp
ATGCTGCCTTTGGACTGCTTGCCTCGTAATAGAAGACCTGCTTCTACAGAGAAGGTGACAGATAAGGTGAAAGATATATGTAACTTGAAAATTGAGCAGCAGCAAAGGAAGCAACATGGACAGGAGTCCAAGGAGGAGAAGAAAGAGCGGAAGGTGAAACTAAGAGTGCATTGGATTTTTGTCAAGAAGTGTGGCACCCCCTCAGCTTTCATGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

72

Amino Acids

8.52

Weight (kDa)

9.9

Isoelectric Point (pI)

53.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 46
AccB1I GGYRCC 1 cut(s) 194
AccBSI CCGCTC 1 cut(s) 148
AciI CCGC 1 cut(s) 148
AgsI TTSAA 1 cut(s) 88
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
ApeKI GCWGC 3 cut(s) 4, 97, 100
AsuHPI GGTGA 3 cut(s) 67, 79, 166
BanI GGYRCC 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 40
BbvCI CCTCAGC 1 cut(s) 202
BbvI GCAGC 2 cut(s) 109, 112
BfmI CTRYAG 1 cut(s) 45
BfuAI ACCTGC 1 cut(s) 46
BisI GCNGC 3 cut(s) 5, 98, 101
BlsI GCNGC 3 cut(s) 6, 99, 102
BmiI GGNNCC 1 cut(s) 196
BoxI GACNNNNGTC 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 40
Bpu10I CCTNAGC 1 cut(s) 202
BsaJI CCNNGG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 216
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 2 cut(s) 109, 112
BshNI GGYRCC 1 cut(s) 194
BspACI CCGC 1 cut(s) 148
BspCNI CTCAG 1 cut(s) 215
BspLI GGNNCC 1 cut(s) 196
BspMI ACCTGC 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 194
BsrBI CCGCTC 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 2 cut(s) 161, 202
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstPAI GACNNNNGTC 1 cut(s) 124
BstSFI CTRYAG 1 cut(s) 45
BstV1I GCAGC 2 cut(s) 109, 112
BstV2I GAAGAC 1 cut(s) 40
BveI ACCTGC 1 cut(s) 46
Cac8I GCNNGC 1 cut(s) 20
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 2 cut(s) 116, 211
CviJI RGCY 1 cut(s) 206
CviKI_1 RGCY 1 cut(s) 206
DdeI CTNAG 2 cut(s) 161, 202
Eco130I CCWWGG 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 2 cut(s) 119, 214
FaiI YATR 4 cut(s) 77, 79, 117, 212
FalI AAGNNNNNCTT 2 cut(s) 25, 57
FatI CATG 2 cut(s) 115, 210
Fnu4HI GCNGC 3 cut(s) 5, 98, 101
Fsp4HI GCNGC 3 cut(s) 5, 98, 101
GluI GCNGC 3 cut(s) 5, 98, 101
Hin1II CATG 2 cut(s) 119, 214
HinfI GANTC 1 cut(s) 125
HphI GGTGA 3 cut(s) 67, 79, 166
Hpy188III TCNNGA 1 cut(s) 184
HpyAV CCTTC 2 cut(s) 46, 145
HpyCH4V TGCA 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 2 cut(s) 161, 202
Hsp92II CATG 2 cut(s) 119, 214
LpnPI CCDG 2 cut(s) 51, 107
Lsp1109I GCAGC 2 cut(s) 109, 112
MaeIII GTNAC 2 cut(s) 55, 80
MbiI CCGCTC 1 cut(s) 148
MboII GAAGA 2 cut(s) 45, 151
MluCI AATT 1 cut(s) 90
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 3 cut(s) 33, 127, 211
MwoI GCNNNNNNNGC 1 cut(s) 109
NlaIII CATG 2 cut(s) 119, 214
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 55
PkrI GCNGC 3 cut(s) 6, 99, 102
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PshAI GACNNNNGTC 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 196
SatI GCNGC 3 cut(s) 5, 98, 101
SchI GAGTC 1 cut(s) 134
SetI ASST 5 cut(s) 40, 57, 69, 156, 208
SfcI CTRYAG 1 cut(s) 45
SgeI CNNG 8 cut(s) 31, 36, 50, 97, 128, 134, 142, 196
Sse9I AATT 1 cut(s) 90
SsiI CCGC 1 cut(s) 148
StyI CCWWGG 1 cut(s) 129
TasI AATT 1 cut(s) 90
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 3 cut(s) 4, 97, 100
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.