Prupe.8G215700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0012577
Physical Location & Seq
Forward (+)
19790507 .. 19792681
2175 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G215700.1

Sequence Viewer

Length: 1122 bp
ATGTTGCTGAGGAGCTCATCAACACCAGTTATTGGATCTCTCCTTTCATCATTCTCAGCAGACAGTCCCAATATCATTAGCAACCATCACTCTGAGCCCACCAAACCAACCACCATCCACCATACTCCCTCCAAATTCTCATTCCACCAAACTTGGGCTCTCAACATCTCACACAATTCCTCACCAATCTCTCCCTCTGTTGATTCTGACCGGTTTTCGTCCCACGGGTTTCCGTCCCACGGGTTTCGAAGGGCTCAGTCTGATGGGAACCTGGAAGGACTACTGGCCTATGCTTCTTGTGACCAAAATGAAGATCTTGTCTGTGACTTAAAACCACCCAAGATTTTTCCTGGAAGATTCAAGTGCACAATGCTGCAAACTATCCCATCTTTTTCACTTCATAACTCAGATGAAGAAGAAGATAGTGATATAGAATATGAGGATGAGGAAGAAGAGTTTGAGGAGAATGTGGAGAGAGTTGTGGCTATGGAAGGTGAAAATGTTGGTTTAGCGGAGAAGGTGAAGAACATGAGCTTAACTCAGGATGTGAAATTTTTGGACAAAATATGGAGTGCAGGTTTTGAAGAGAAAAGAGAGCTTGTGAGTCGAGAAATGCATCTTGCAAAGGGGCTTGGGATTGGTGGAGGCGGCGGCGGGGGTAGCCGCGGTAGAGGAGAAGTTAATTGGGGAGGATCTGGCGATGATGGAGGAGACAACCATGGGGCTGAGGGGCATTACAAGAAGCTGGTTGAGGAAAATCCAGGCAACCCCTTGTTTCTTGGAAATTATGCTCAATTTTTGTATCAGACCAACAGAGACCTTCATGGAGCAGAGGAATATTACTCTCGAGCCATCCTAGCAGACCCTAAAGATGGTGAAGTTTTGGCTCAATATGCTAATTTAGTATGGGAGCTGCACCACGACCAAGATAGAGCCCTGAGCTACTATGAACGAGCAGTTCAAGCTGCACCTCAAGACAGCCATGTCCATGCGGCATATGCTAATTTCCTCTGGGAAACAGAGGAAGACGAAGATGAAGATGAAGCTTATGCGGCAGGGAACGATCTTCATGCCATCCCGTCATATCGTCACCAAGGAATTATGACTTCAGCAACTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_19

Protein Analysis

374

Amino Acids

41.29

Weight (kDa)

4.77

Isoelectric Point (pI)

54.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 983
Acc36I ACCTGC 1 cut(s) 566
AccB7I CCANNNNNTGG 1 cut(s) 32
AccII CGCG 1 cut(s) 666
AciI CCGC 8 cut(s) 512, 648, 651, 654, 664, 666, 992, 1052
AclWI GGATC 2 cut(s) 43, 700
AcsI RAATTY 2 cut(s) 134, 551
AcuI CTGAAG 1 cut(s) 1092
AfiI CCNNNNNNNGG 4 cut(s) 32, 154, 239, 872
AgeI ACCGGT 1 cut(s) 210
AgsI TTSAA 3 cut(s) 361, 584, 962
AjnI CCWGG 3 cut(s) 270, 349, 760
AjuI GAANNNNNNNTTGG 2 cut(s) 125, 157
AluBI AGCT 8 cut(s) 15, 534, 598, 745, 913, 942, 965, 1046
AluI AGCT 8 cut(s) 15, 534, 598, 745, 913, 942, 965, 1046
Alw21I GWGCWC 2 cut(s) 17, 368
Alw26I GTCTC 2 cut(s) 705, 810
Alw44I GTGCAC 1 cut(s) 364
AlwI GGATC 2 cut(s) 43, 700
AlwNI CAGNNNCTG 1 cut(s) 1115
Ama87I CYCGRG 1 cut(s) 846
AoxI GGCC 1 cut(s) 285
ApaLI GTGCAC 1 cut(s) 364
ApeKI GCWGC 3 cut(s) 373, 913, 965
ApoI RAATTY 2 cut(s) 134, 551
AsiGI ACCGGT 1 cut(s) 210
AsuHPI GGTGA 5 cut(s) 174, 506, 532, 887, 1082
AsuII TTCGAA 1 cut(s) 247
AvaI CYCGRG 1 cut(s) 846
BaeGI GKGCMC 1 cut(s) 368
BanII GRGCYC 5 cut(s) 17, 99, 160, 256, 937
BbsI GAAGAC 1 cut(s) 1032
Bbv12I GWGCWC 2 cut(s) 17, 368
BbvCI CCTCAGC 2 cut(s) 8, 726
BbvI GCAGC 3 cut(s) 360, 900, 952
BccI CCATC 8 cut(s) 93, 122, 257, 394, 698, 860, 866, 1082
BcgI CGANNNNNNTGC 2 cut(s) 1052, 1086
BciT130I CCWGG 3 cut(s) 272, 351, 762
BcoDI GTCTC 2 cut(s) 705, 810
BfaI CTAG 2 cut(s) 857, 1120
BfuAI ACCTGC 1 cut(s) 566
BglII AGATCT 1 cut(s) 313
BisI GCNGC 8 cut(s) 374, 649, 652, 664, 914, 966, 993, 1053
BlsI GCNGC 8 cut(s) 375, 650, 653, 665, 915, 967, 994, 1054
Bme1390I CCNGG 3 cut(s) 272, 351, 762
BmeT110I CYCGRG 1 cut(s) 846
BmiI GGNNCC 1 cut(s) 269
BmrFI CCNGG 3 cut(s) 272, 351, 762
BmsI GCATC 1 cut(s) 625
BpiI GAAGAC 1 cut(s) 1032
BplI GAGNNNNNCTC 2 cut(s) 523, 555
Bpu10I CCTNAGC 3 cut(s) 8, 726, 938
Bpu14I TTCGAA 1 cut(s) 247
BpuEI CTTGAG 1 cut(s) 957
BsaI GGTCTC 1 cut(s) 810
BsaJI CCNNGG 5 cut(s) 223, 238, 664, 718, 1093
BsaWI WCCGGW 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 562, 592
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 154, 239, 872
Bse118I RCCGGY 1 cut(s) 210
Bse1I ACTGG 2 cut(s) 26, 288
BseBI CCWGG 3 cut(s) 272, 351, 762
BseDI CCNNGG 5 cut(s) 223, 238, 664, 718, 1093
BseGI GGATG 5 cut(s) 114, 448, 550, 852, 1074
BseLI CCNNNNNNNGG 4 cut(s) 32, 154, 239, 872
BseMII CTCAG 7 cut(s) 69, 84, 269, 420, 554, 717, 929
BseNI ACTGG 2 cut(s) 26, 288
BseRI GAGGAG 4 cut(s) 25, 476, 687, 723
BseSI GKGCMC 1 cut(s) 368
BseXI GCAGC 3 cut(s) 360, 900, 952
BsgI GTGCAG 3 cut(s) 594, 899, 951
Bsh1236I CGCG 1 cut(s) 666
BshFI GGCC 1 cut(s) 287
BshTI ACCGGT 1 cut(s) 210
BsiHKAI GWGCWC 2 cut(s) 17, 368
BsiHKCI CYCGRG 1 cut(s) 846
BsiSI CCGG 1 cut(s) 211
BslFI GGGAC 3 cut(s) 51, 205, 220
BslI CCNNNNNNNGG 4 cut(s) 32, 154, 239, 872
BsmAI GTCTC 2 cut(s) 705, 810
BsmFI GGGAC 3 cut(s) 51, 205, 220
BsnI GGCC 1 cut(s) 287
Bso31I GGTCTC 1 cut(s) 810
BsoBI CYCGRG 1 cut(s) 846
Bsp119I TTCGAA 1 cut(s) 247
Bsp1286I GDGCHC 6 cut(s) 17, 99, 160, 256, 368, 937
Bsp143I GATC 4 cut(s) 35, 313, 692, 1063
Bsp19I CCATGG 1 cut(s) 718
BspACI CCGC 8 cut(s) 512, 648, 651, 654, 664, 666, 992, 1052
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 7 cut(s) 68, 85, 268, 419, 553, 718, 930
BspFNI CGCG 1 cut(s) 666
BspLI GGNNCC 1 cut(s) 269
BspMI ACCTGC 1 cut(s) 566
BspPI GGATC 2 cut(s) 43, 700
BspT104I TTCGAA 1 cut(s) 247
BspTNI GGTCTC 1 cut(s) 810
BsrFI RCCGGY 1 cut(s) 210
BsrI ACTGG 2 cut(s) 26, 288
BssAI RCCGGY 1 cut(s) 210
BssECI CCNNGG 5 cut(s) 223, 238, 664, 718, 1093
BssMI GATC 4 cut(s) 35, 313, 692, 1063
BssT1I CCWWGG 2 cut(s) 718, 1093
Bst2UI CCWGG 3 cut(s) 272, 351, 762
Bst4CI ACNGT 1 cut(s) 65
Bst6I CTCTTC 2 cut(s) 447, 579
BstBI TTCGAA 1 cut(s) 247
BstDEI CTNAG 8 cut(s) 8, 55, 93, 255, 406, 540, 726, 938
BstDSI CCRYGG 4 cut(s) 223, 238, 664, 718
BstF5I GGATG 5 cut(s) 114, 448, 550, 852, 1074
BstFNI CGCG 1 cut(s) 666
BstKTI GATC 4 cut(s) 38, 316, 695, 1066
BstMAI GTCTC 2 cut(s) 705, 810
BstMBI GATC 4 cut(s) 35, 313, 692, 1063
BstMWI GCNNNNNNNGC 6 cut(s) 660, 857, 893, 962, 998, 1052
BstNI CCWGG 3 cut(s) 272, 351, 762
BstSCI CCNGG 3 cut(s) 270, 349, 760
BstSLI GKGCMC 1 cut(s) 368
BstUI CGCG 1 cut(s) 666
BstV1I GCAGC 3 cut(s) 360, 900, 952
BstV2I GAAGAC 1 cut(s) 1032
BstX2I RGATCY 3 cut(s) 35, 313, 692
BstYI RGATCY 3 cut(s) 35, 313, 692
BsuRI GGCC 1 cut(s) 287
BtgI CCRYGG 4 cut(s) 223, 238, 664, 718
BtgZI GCGATG 1 cut(s) 714
BtsCI GGATG 5 cut(s) 114, 448, 550, 852, 1074
BveI ACCTGC 1 cut(s) 566
CaiI CAGNNNCTG 1 cut(s) 1115
Cfr10I RCCGGY 1 cut(s) 210
Cfr42I CCGCGG 1 cut(s) 667
CspAI ACCGGT 1 cut(s) 210
CspCI CAANNNNNGTGG 2 cut(s) 134, 169
CviAII CATG 6 cut(s) 529, 719, 824, 983, 989, 1070
DdeI CTNAG 8 cut(s) 8, 55, 93, 255, 406, 540, 726, 938
DpnI GATC 4 cut(s) 37, 315, 694, 1065
DpnII GATC 4 cut(s) 35, 313, 692, 1063
DrdI GACNNNNNNGTC 1 cut(s) 983
DseDI GACNNNNNNGTC 1 cut(s) 983
Eam1104I CTCTTC 2 cut(s) 447, 579
EarI CTCTTC 2 cut(s) 447, 579
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 2 cut(s) 718, 1093
Eco24I GRGCYC 5 cut(s) 17, 99, 160, 256, 937
Eco31I GGTCTC 1 cut(s) 810
Eco53kI GAGCTC 1 cut(s) 15
Eco57I CTGAAG 1 cut(s) 1092
Eco88I CYCGRG 1 cut(s) 846
EcoICRI GAGCTC 1 cut(s) 15
EcoRII CCWGG 3 cut(s) 270, 349, 760
EcoT14I CCWWGG 2 cut(s) 718, 1093
EcoT22I ATGCAT 1 cut(s) 618
EcoT38I GRGCYC 5 cut(s) 17, 99, 160, 256, 937
ErhI CCWWGG 2 cut(s) 718, 1093
FaeI CATG 6 cut(s) 532, 722, 827, 986, 992, 1073
FaqI GGGAC 3 cut(s) 51, 205, 220
FatI CATG 6 cut(s) 528, 718, 823, 982, 988, 1069
FauI CCCGC 1 cut(s) 647
FauNDI CATATG 1 cut(s) 997
Fnu4HI GCNGC 8 cut(s) 374, 649, 652, 664, 914, 966, 993, 1053
FokI GGATG 5 cut(s) 101, 455, 557, 839, 1061
FriOI GRGCYC 5 cut(s) 17, 99, 160, 256, 937
Fsp4HI GCNGC 8 cut(s) 374, 649, 652, 664, 914, 966, 993, 1053
FspBI CTAG 2 cut(s) 857, 1120
GluI GCNGC 8 cut(s) 374, 649, 652, 664, 914, 966, 993, 1053
HaeIII GGCC 1 cut(s) 287
HapII CCGG 1 cut(s) 211
Hin1II CATG 6 cut(s) 532, 722, 827, 986, 992, 1073
HindIII AAGCTT 1 cut(s) 1044
HinfI GANTC 3 cut(s) 203, 357, 604
HpaII CCGG 1 cut(s) 211
HphI GGTGA 5 cut(s) 174, 506, 532, 887, 1082
Hpy166II GTNNAC 1 cut(s) 366
Hpy188I TCNGA 5 cut(s) 94, 208, 262, 409, 807
Hpy188III TCNNGA 4 cut(s) 542, 608, 846, 974
Hpy8I GTNNAC 1 cut(s) 366
HpyAV CCTTC 5 cut(s) 243, 269, 485, 511, 830
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4V TGCA 7 cut(s) 366, 376, 575, 616, 623, 916, 968
HpyF10VI GCNNNNNNNGC 6 cut(s) 660, 857, 893, 962, 998, 1052
HpyF3I CTNAG 8 cut(s) 8, 55, 93, 255, 406, 540, 726, 938
Hsp92II CATG 6 cut(s) 532, 722, 827, 986, 992, 1073
KspI CCGCGG 1 cut(s) 667
Kzo9I GATC 4 cut(s) 35, 313, 692, 1063
LmnI GCTCC 3 cut(s) 12, 827, 910
Lsp1109I GCAGC 3 cut(s) 360, 900, 952
LweI GCATC 1 cut(s) 625
MaeI CTAG 2 cut(s) 857, 1120
MaeIII GTNAC 3 cut(s) 299, 323, 1088
MalI GATC 4 cut(s) 37, 315, 694, 1065
MboI GATC 4 cut(s) 35, 313, 692, 1063
MflI RGATCY 3 cut(s) 35, 313, 692
MhlI GDGCHC 6 cut(s) 17, 99, 160, 256, 368, 937
MluCI AATT 9 cut(s) 134, 175, 551, 682, 784, 794, 898, 1003, 1098
MlyI GAGTC 1 cut(s) 613
Mph1103I ATGCAT 1 cut(s) 618
MseI TTAA 3 cut(s) 329, 536, 681
MslI CAYNNNNRTG 1 cut(s) 987
MspA1I CMGCKG 1 cut(s) 666
MspI CCGG 1 cut(s) 211
MspR9I CCNGG 3 cut(s) 272, 351, 762
MvaI CCWGG 3 cut(s) 272, 351, 762
MvnI CGCG 1 cut(s) 666
MwoI GCNNNNNNNGC 6 cut(s) 660, 857, 893, 962, 998, 1052
NcoI CCATGG 1 cut(s) 718
NdeI CATATG 1 cut(s) 997
NdeII GATC 4 cut(s) 35, 313, 692, 1063
NlaIII CATG 6 cut(s) 532, 722, 827, 986, 992, 1073
NlaIV GGNNCC 1 cut(s) 269
NmuCI GTSAC 3 cut(s) 299, 323, 1088
NsiI ATGCAT 1 cut(s) 618
NspV TTCGAA 1 cut(s) 247
PaeR7I CTCGAG 1 cut(s) 846
PfeI GAWTC 2 cut(s) 203, 357
PflMI CCANNNNNTGG 1 cut(s) 32
PfoI TCCNGGA 1 cut(s) 349
PinAI ACCGGT 1 cut(s) 210
PkrI GCNGC 8 cut(s) 375, 650, 653, 665, 915, 967, 994, 1054
PleI GAGTC 1 cut(s) 612
PpsI GAGTC 1 cut(s) 612
Psp124BI GAGCTC 1 cut(s) 17
Psp6I CCWGG 3 cut(s) 270, 349, 760
PspGI CCWGG 3 cut(s) 270, 349, 760
PspN4I GGNNCC 1 cut(s) 269
PstNI CAGNNNCTG 1 cut(s) 1115
PsuI RGATCY 3 cut(s) 35, 313, 692
RseI CAYNNNNRTG 1 cut(s) 987
SacI GAGCTC 1 cut(s) 17
SacII CCGCGG 1 cut(s) 667
SaqAI TTAA 3 cut(s) 329, 536, 681
SatI GCNGC 8 cut(s) 374, 649, 652, 664, 914, 966, 993, 1053
Sau3AI GATC 4 cut(s) 35, 313, 692, 1063
SchI GAGTC 1 cut(s) 613
ScrFI CCNGG 3 cut(s) 272, 351, 762
SduI GDGCHC 6 cut(s) 17, 99, 160, 256, 368, 937
SfaNI GCATC 1 cut(s) 625
Sfr274I CTCGAG 1 cut(s) 846
Sfr303I CCGCGG 1 cut(s) 667
SfuI TTCGAA 1 cut(s) 247
SgrBI CCGCGG 1 cut(s) 667
SlaI CTCGAG 1 cut(s) 846
SmiMI CAYNNNNRTG 1 cut(s) 987
SmlI CTYRAG 2 cut(s) 846, 972
SmoI CTYRAG 2 cut(s) 846, 972
Sse9I AATT 9 cut(s) 134, 175, 551, 682, 784, 794, 898, 1003, 1098
SsiI CCGC 8 cut(s) 512, 648, 651, 654, 664, 666, 992, 1052
SspI AATATT 1 cut(s) 839
SspMI CTAG 2 cut(s) 857, 1120
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 3 cut(s) 270, 349, 760
StyI CCWWGG 2 cut(s) 718, 1093
TaaI ACNGT 1 cut(s) 65
TaqI TCGA 3 cut(s) 247, 607, 847
TasI AATT 9 cut(s) 134, 175, 551, 682, 784, 794, 898, 1003, 1098
TauI GCSGC 5 cut(s) 651, 654, 666, 995, 1055
TfiI GAWTC 2 cut(s) 203, 357
Tru1I TTAA 3 cut(s) 329, 536, 681
Tru9I TTAA 3 cut(s) 329, 536, 681
TseFI GTSAC 3 cut(s) 299, 323, 1088
TseI GCWGC 3 cut(s) 373, 913, 965
Tsp45I GTSAC 3 cut(s) 299, 323, 1088
TspDTI ATGAA 9 cut(s) 36, 324, 389, 426, 812, 963, 1050, 1056, 1058
TspGWI ACGGA 1 cut(s) 222
Van91I CCANNNNNTGG 1 cut(s) 32
VneI GTGCAC 1 cut(s) 364
XapI RAATTY 2 cut(s) 134, 551
XhoI CTCGAG 1 cut(s) 846
XspI CTAG 2 cut(s) 857, 1120
Zsp2I ATGCAT 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.