Rroxscaffold_7G00182110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012577
Physical Location & Seq
Reverse (-)
21123490 .. 21125174
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00182110.1

Sequence Viewer

Length: 1086 bp
ATGTTGCTGAGGAGCTCTTCAACACCAGTTATTGGATCCCTTCTTGCATCATTCTCAGCTGAAAGTCCACTTGGCAATCACTTTGAACCAAAACCAACCTCAATCCACCACACTCCCACTAAGTTTTCATTTCACCAAACTGGACCTCTCAACATCTCACACGGTTCCTCACCAATCTCTCCCTCCATTGATCTTTCCTCCGGGTTTCTTCGGAGGGCTCAGTCTGATGGAAACTTGGAAGGACTGTCTTATGCAGCTTCTTGTGATAAACATGAAGATGATCCGTTCTTCTGTGATTTATACCAACCCAACAAGTCGAGATCCAGGGGAATACCGTTGCAAACTATAGATTCTTTTTCGACCTATAACTCGGGAGCTTTGGGTGAAGATGAAGAAGATAGTGATAGGGAATTTGATGAAGAGGTTGAGGAAAGTGAGAGAGACATGGCTATTGAAGGTGATAGTGTTGGTTTGGAAGAGAAGGTGAGGAAGGTGAGTTTATCCGAGGACATGAGAACTATGCAGAAAATGTGGGGTGGGGGTTATGAAGAACGAAGAGAGCTAGAAAGTCGAGAAATGCATCTTGCAAAGGGTCTTGGGATTGGTGGTGGAAGTGGCGGTGGCCGGGGTGGTCACGAGGCCAATTGGGAAAGCACTGGTGGAGATGGAGATGACAACAACCAGGGGGTTGAGGAGCATTACAAGAAGATGGTAGACGAACATCCTGGAAACCCATTGTTTCTCGGAAATTATGCTAATTTTTTGTATCAGAACAAGAGAGACCTTCCTTTAGCAGAGGAATACTACTCTCGTTCGATCCTAGCAGACCCGAATGACGGTGAAATTTTGGCACAATATGCCAAGGTAGTATGGGAGCTGCACCATGATGAAGATAGAGCCTTAAGCTACTATGAACGAGCAGTCCAAGCTGCACCTCAAGATAGCTATGTCCATGCAGCATACGCTAGCTTCCTATGGGAAACAGAGGAAGATGACGAAGATGAAAATGAAGCAGATCTGGGACAAGATCTGGGCGCCATGTCGCCATATATTCATGAAGGAATCATGACTTCTGCAAGCGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_19

Protein Analysis

361

Amino Acids

39.96

Weight (kDa)

4.5

Isoelectric Point (pI)

63.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1034
AccB7I CCANNNNNTGG 1 cut(s) 32
AccI GTMKAC 1 cut(s) 714
AciI CCGC 1 cut(s) 618
AclWI GGATC 5 cut(s) 30, 43, 275, 315, 811
AcoI YGGCCR 1 cut(s) 622
AcsI RAATTY 2 cut(s) 410, 843
AcyI GRCGYC 1 cut(s) 1035
AfiI CCNNNNNNNGG 2 cut(s) 32, 836
AflII CTTAAG 1 cut(s) 901
AgsI TTSAA 3 cut(s) 21, 86, 455
AjnI CCWGG 3 cut(s) 323, 681, 724
AjuI GAANNNNNNNTTGG 2 cut(s) 54, 86
AloI GAACNNNNNNTCC 2 cut(s) 906, 938
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 2 cut(s) 435, 774
AlwI GGATC 5 cut(s) 30, 43, 275, 315, 811
Ama87I CYCGRG 1 cut(s) 370
AoxI GGCC 2 cut(s) 622, 639
ApeKI GCWGC 4 cut(s) 254, 877, 929, 956
ApoI RAATTY 2 cut(s) 410, 843
AspLEI GCGC 2 cut(s) 1037, 1082
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 2 cut(s) 202, 626
AsuHPI GGTGA 7 cut(s) 125, 162, 395, 470, 496, 505, 851
AsuNHI GCTAGC 1 cut(s) 965
AvaI CYCGRG 1 cut(s) 370
AvaII GGWCC 1 cut(s) 143
BamHI GGATCC 1 cut(s) 35
BanI GGYRCC 1 cut(s) 1034
BanII GRGCYC 2 cut(s) 17, 220
BauI CACGAG 1 cut(s) 635
Bbv12I GWGCWC 1 cut(s) 17
BbvCI CCTCAGC 1 cut(s) 8
BbvI GCAGC 4 cut(s) 266, 864, 916, 968
BccI CCATC 3 cut(s) 221, 659, 703
BciT130I CCWGG 3 cut(s) 325, 683, 726
BcnI CCSGG 2 cut(s) 202, 626
BcoDI GTCTC 2 cut(s) 435, 774
BfaI CTAG 3 cut(s) 563, 821, 966
BfmI CTRYAG 1 cut(s) 345
BfoI RGCGCY 2 cut(s) 1038, 1083
BfrI CTTAAG 1 cut(s) 901
BglII AGATCT 2 cut(s) 1015, 1027
BisI GCNGC 4 cut(s) 255, 878, 930, 957
BlsI GCNGC 4 cut(s) 256, 879, 931, 958
Bme1390I CCNGG 5 cut(s) 202, 325, 626, 683, 726
Bme18I GGWCC 1 cut(s) 143
BmeT110I CYCGRG 1 cut(s) 370
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 3 cut(s) 37, 166, 1036
BmrFI CCNGG 5 cut(s) 202, 325, 626, 683, 726
BmsI GCATC 2 cut(s) 56, 589
BmtI GCTAGC 1 cut(s) 969
Bpu10I CCTNAGC 1 cut(s) 8
BpuEI CTTGAG 1 cut(s) 921
BpuMI CCSGG 2 cut(s) 202, 626
BsaHI GRCGYC 1 cut(s) 1035
BsaI GGTCTC 1 cut(s) 774
BsaJI CCNNGG 5 cut(s) 324, 504, 625, 682, 861
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 836
Bse1I ACTGG 3 cut(s) 26, 145, 661
BseBI CCWGG 3 cut(s) 325, 683, 726
BseDI CCNNGG 5 cut(s) 324, 504, 625, 682, 861
BseGI GGATG 1 cut(s) 721
BseLI CCNNNNNNNGG 2 cut(s) 32, 836
BseMII CTCAG 2 cut(s) 69, 233
BseNI ACTGG 3 cut(s) 26, 145, 661
BseRI GAGGAG 2 cut(s) 25, 707
BseXI GCAGC 4 cut(s) 266, 864, 916, 968
BsgI GTGCAG 2 cut(s) 863, 915
BshFI GGCC 2 cut(s) 624, 641
BshNI GGYRCC 1 cut(s) 1034
BsiHKAI GWGCWC 1 cut(s) 17
BsiHKCI CYCGRG 1 cut(s) 370
BsiSI CCGG 2 cut(s) 201, 625
BslFI GGGAC 1 cut(s) 1035
BslI CCNNNNNNNGG 2 cut(s) 32, 836
BsmAI GTCTC 2 cut(s) 435, 774
BsmFI GGGAC 1 cut(s) 1035
BsnI GGCC 2 cut(s) 624, 641
Bso31I GGTCTC 1 cut(s) 774
BsoBI CYCGRG 1 cut(s) 370
Bsp1286I GDGCHC 2 cut(s) 17, 220
Bsp143I GATC 7 cut(s) 35, 190, 280, 320, 816, 1015, 1027
BspACI CCGC 1 cut(s) 618
BspANI GGCC 2 cut(s) 624, 641
BspCNI CTCAG 2 cut(s) 68, 232
BspHI TCATGA 2 cut(s) 1054, 1065
BspLI GGNNCC 3 cut(s) 37, 166, 1036
BspOI GCTAGC 1 cut(s) 969
BspPI GGATC 5 cut(s) 30, 43, 275, 315, 811
BspQI GCTCTTC 1 cut(s) 22
BspT107I GGYRCC 1 cut(s) 1034
BspTI CTTAAG 1 cut(s) 901
BspTNI GGTCTC 1 cut(s) 774
BsrI ACTGG 3 cut(s) 26, 145, 661
BssECI CCNNGG 5 cut(s) 324, 504, 625, 682, 861
BssMI GATC 7 cut(s) 35, 190, 280, 320, 816, 1015, 1027
BssNI GRCGYC 1 cut(s) 1035
BssSI CACGAG 1 cut(s) 635
BssT1I CCWWGG 1 cut(s) 861
Bst2BI CACGAG 1 cut(s) 635
Bst2UI CCWGG 3 cut(s) 325, 683, 726
Bst4CI ACNGT 4 cut(s) 164, 246, 336, 839
Bst6I CTCTTC 4 cut(s) 22, 414, 471, 550
BstACI GRCGYC 1 cut(s) 1035
BstAFI CTTAAG 1 cut(s) 901
BstAPI GCANNNNNTGC 1 cut(s) 857
BstC8I GCNNGC 2 cut(s) 967, 1078
BstDEI CTNAG 4 cut(s) 8, 55, 120, 219
BstF5I GGATG 1 cut(s) 721
BstH2I RGCGCY 2 cut(s) 1038, 1083
BstHHI GCGC 2 cut(s) 1037, 1082
BstKTI GATC 7 cut(s) 38, 193, 283, 323, 819, 1018, 1030
BstMAI GTCTC 2 cut(s) 435, 774
BstMBI GATC 7 cut(s) 35, 190, 280, 320, 816, 1015, 1027
BstMWI GCNNNNNNNGC 3 cut(s) 857, 926, 962
BstNI CCWGG 3 cut(s) 325, 683, 726
BstSCI CCNGG 5 cut(s) 200, 323, 624, 681, 724
BstSFI CTRYAG 1 cut(s) 345
BstV1I GCAGC 4 cut(s) 266, 864, 916, 968
BstX2I RGATCY 4 cut(s) 35, 320, 1015, 1027
BstYI RGATCY 4 cut(s) 35, 320, 1015, 1027
BsuRI GGCC 2 cut(s) 624, 641
BtsCI GGATG 1 cut(s) 721
BtsIMutI CAGTG 1 cut(s) 654
Cac8I GCNNGC 2 cut(s) 967, 1078
CciI TCATGA 2 cut(s) 1054, 1065
CfoI GCGC 2 cut(s) 1037, 1082
Cfr13I GGNCC 1 cut(s) 143
CviAII CATG 8 cut(s) 272, 445, 511, 884, 953, 1039, 1055, 1066
DdeI CTNAG 4 cut(s) 8, 55, 120, 219
DinI GGCGCC 1 cut(s) 1036
DpnI GATC 7 cut(s) 37, 192, 282, 322, 818, 1017, 1029
DpnII GATC 7 cut(s) 35, 190, 280, 320, 816, 1015, 1027
EaeI YGGCCR 1 cut(s) 622
Eam1104I CTCTTC 4 cut(s) 22, 414, 471, 550
EarI CTCTTC 4 cut(s) 22, 414, 471, 550
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 861
Eco24I GRGCYC 2 cut(s) 17, 220
Eco31I GGTCTC 1 cut(s) 774
Eco47I GGWCC 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 370
EcoICRI GAGCTC 1 cut(s) 15
EcoRII CCWGG 3 cut(s) 323, 681, 724
EcoT14I CCWWGG 1 cut(s) 861
EcoT22I ATGCAT 1 cut(s) 582
EcoT38I GRGCYC 2 cut(s) 17, 220
EgeI GGCGCC 1 cut(s) 1036
EheI GGCGCC 1 cut(s) 1036
ErhI CCWWGG 1 cut(s) 861
FaeI CATG 8 cut(s) 275, 448, 514, 887, 956, 1042, 1058, 1069
FaqI GGGAC 1 cut(s) 1035
FatI CATG 8 cut(s) 271, 444, 510, 883, 952, 1038, 1054, 1065
FblI GTMKAC 1 cut(s) 714
Fnu4HI GCNGC 4 cut(s) 255, 878, 930, 957
FokI GGATG 1 cut(s) 708
FriOI GRGCYC 2 cut(s) 17, 220
Fsp4HI GCNGC 4 cut(s) 255, 878, 930, 957
FspBI CTAG 3 cut(s) 563, 821, 966
GlaI GCGC 2 cut(s) 1036, 1081
GluI GCNGC 4 cut(s) 255, 878, 930, 957
HaeII RGCGCY 2 cut(s) 1038, 1083
HaeIII GGCC 2 cut(s) 624, 641
HapII CCGG 2 cut(s) 201, 625
HhaI GCGC 2 cut(s) 1037, 1082
Hin1I GRCGYC 1 cut(s) 1035
Hin1II CATG 8 cut(s) 275, 448, 514, 887, 956, 1042, 1058, 1069
Hin6I GCGC 2 cut(s) 1035, 1080
HinP1I GCGC 2 cut(s) 1035, 1080
HinfI GANTC 2 cut(s) 350, 1062
HpaII CCGG 2 cut(s) 201, 625
HphI GGTGA 7 cut(s) 125, 162, 395, 470, 496, 505, 851
Hpy166II GTNNAC 2 cut(s) 68, 715
Hpy188I TCNGA 5 cut(s) 213, 226, 505, 746, 771
Hpy188III TCNNGA 7 cut(s) 318, 372, 572, 635, 938, 1055, 1066
Hpy8I GTNNAC 2 cut(s) 68, 715
HpyAV CCTTC 7 cut(s) 50, 233, 449, 475, 484, 794, 1052
HpyCH4III ACNGT 4 cut(s) 164, 246, 336, 839
HpyF10VI GCNNNNNNNGC 3 cut(s) 857, 926, 962
HpyF3I CTNAG 4 cut(s) 8, 55, 120, 219
Hsp92I GRCGYC 1 cut(s) 1035
Hsp92II CATG 8 cut(s) 275, 448, 514, 887, 956, 1042, 1058, 1069
HspAI GCGC 2 cut(s) 1035, 1080
KasI GGCGCC 1 cut(s) 1034
Kzo9I GATC 7 cut(s) 35, 190, 280, 320, 816, 1015, 1027
LguI GCTCTTC 1 cut(s) 22
LmnI GCTCC 4 cut(s) 12, 374, 694, 874
Lsp1109I GCAGC 4 cut(s) 266, 864, 916, 968
LweI GCATC 2 cut(s) 56, 589
MaeI CTAG 3 cut(s) 563, 821, 966
MaeIII GTNAC 1 cut(s) 632
MalI GATC 7 cut(s) 37, 192, 282, 322, 818, 1017, 1029
MboI GATC 7 cut(s) 35, 190, 280, 320, 816, 1015, 1027
MfeI CAATTG 1 cut(s) 643
MflI RGATCY 4 cut(s) 35, 320, 1015, 1027
MhlI GDGCHC 2 cut(s) 17, 220
MluCI AATT 5 cut(s) 410, 643, 748, 757, 843
Mly113I GGCGCC 1 cut(s) 1035
Mph1103I ATGCAT 1 cut(s) 582
MseI TTAA 1 cut(s) 902
MslI CAYNNNNRTG 2 cut(s) 276, 885
MspA1I CMGCKG 1 cut(s) 59
MspCI CTTAAG 1 cut(s) 901
MspI CCGG 2 cut(s) 201, 625
MspR9I CCNGG 5 cut(s) 202, 325, 626, 683, 726
MunI CAATTG 1 cut(s) 643
MvaI CCWGG 3 cut(s) 325, 683, 726
MwoI GCNNNNNNNGC 3 cut(s) 857, 926, 962
NarI GGCGCC 1 cut(s) 1035
NciI CCSGG 2 cut(s) 202, 626
NdeII GATC 7 cut(s) 35, 190, 280, 320, 816, 1015, 1027
NheI GCTAGC 1 cut(s) 965
NlaIII CATG 8 cut(s) 275, 448, 514, 887, 956, 1042, 1058, 1069
NlaIV GGNNCC 3 cut(s) 37, 166, 1036
NmuCI GTSAC 1 cut(s) 632
NsiI ATGCAT 1 cut(s) 582
PagI TCATGA 2 cut(s) 1054, 1065
PciSI GCTCTTC 1 cut(s) 22
PfeI GAWTC 2 cut(s) 350, 1062
PflMI CCANNNNNTGG 1 cut(s) 32
PfoI TCCNGGA 1 cut(s) 724
PkrI GCNGC 4 cut(s) 256, 879, 931, 958
PluTI GGCGCC 1 cut(s) 1038
Psp124BI GAGCTC 1 cut(s) 17
Psp6I CCWGG 3 cut(s) 323, 681, 724
PspGI CCWGG 3 cut(s) 323, 681, 724
PspN4I GGNNCC 3 cut(s) 37, 166, 1036
PspPI GGNCC 1 cut(s) 143
PsuI RGATCY 4 cut(s) 35, 320, 1015, 1027
PvuII CAGCTG 1 cut(s) 59
RseI CAYNNNNRTG 2 cut(s) 276, 885
SacI GAGCTC 1 cut(s) 17
SapI GCTCTTC 1 cut(s) 22
SaqAI TTAA 1 cut(s) 902
SatI GCNGC 4 cut(s) 255, 878, 930, 957
Sau3AI GATC 7 cut(s) 35, 190, 280, 320, 816, 1015, 1027
Sau96I GGNCC 1 cut(s) 143
ScrFI CCNGG 5 cut(s) 202, 325, 626, 683, 726
SduI GDGCHC 2 cut(s) 17, 220
SfaNI GCATC 2 cut(s) 56, 589
SfcI CTRYAG 1 cut(s) 345
SfoI GGCGCC 1 cut(s) 1036
SinI GGWCC 1 cut(s) 143
SmiMI CAYNNNNRTG 2 cut(s) 276, 885
SmlI CTYRAG 2 cut(s) 901, 936
SmoI CTYRAG 2 cut(s) 901, 936
Sse9I AATT 5 cut(s) 410, 643, 748, 757, 843
SsiI CCGC 1 cut(s) 618
SspDI GGCGCC 1 cut(s) 1034
SspMI CTAG 3 cut(s) 563, 821, 966
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 5 cut(s) 200, 323, 624, 681, 724
StyI CCWWGG 1 cut(s) 861
TaaI ACNGT 4 cut(s) 164, 246, 336, 839
TaqI TCGA 4 cut(s) 317, 359, 571, 815
TasI AATT 5 cut(s) 410, 643, 748, 757, 843
TfiI GAWTC 2 cut(s) 350, 1062
Tru1I TTAA 1 cut(s) 902
Tru9I TTAA 1 cut(s) 902
TscAI CASTG 1 cut(s) 661
TseFI GTSAC 1 cut(s) 632
TseI GCWGC 4 cut(s) 254, 877, 929, 956
Tsp45I GTSAC 1 cut(s) 632
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 1 cut(s) 661
Van91I CCANNNNNTGG 1 cut(s) 32
Vha464I CTTAAG 1 cut(s) 901
VpaK11BI GGWCC 1 cut(s) 143
XapI RAATTY 2 cut(s) 410, 843
XmiI GTMKAC 1 cut(s) 714
XspI CTAG 3 cut(s) 563, 821, 966
Zsp2I ATGCAT 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.