RchiOBHm_Chr6g0286691

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0012577
Physical Location & Seq
Forward (+)
50096346 .. 50098331
1986 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25715

Sequence Viewer

Length: 1071 bp
ATGTTGCTGAGGAGCTCTTCAACACCAGTTATTGGATCCCTTCTTGCATCATTCTCAGCTGAAAGTCCACTTGGCAATCACTTTGAACCAAAACCAACCTCAATCCACCACACTCCCACTAAGTTTTCATTTCACCAAACTGGGCCTCTCAACATCTCACACGGTTCCTCACCAATCTCTCCCTCCATTGATCTTTCCTCCGGGTTTCTTCGGAGGGCTCAGTCTGATGGAAACTTGCAAGGACTGGCGTATGCTGCTTCTTGTGATAAACATGAAGATGATCCGTTCTTCTGTGATTTATACCAACCCAACAAGTCGAGATCCAGGGGAATACCGTTGCAAACTATAGATTCTTTTTCGACTTATAACTCGGGTGCTTTGGGTGAAGATGAAGAAGATAGTGATAGGGAATTTGATGAAGAGGTTGAGGAAAGTGAGAGAGTCATGGCTATTGAAGGTGATAGTGTTGGTTTGGAAGAGAAGGTGAGGAAGGTGAGTTTATCCGAGGACATGAGAACTATGCAGAAAATGTGGGGTGGGGGTTATGAAGAACAAAGAGAGCTAGAAAGTCGAGAAATGCACCTTGCAAAGGGACTTGGGATTGGTGGTGGAAGTGGCGGTGGCCGGGGTGGTCACGAGGCTAATTGGGAAAGCACTGGTGGAGATGGAGATGACAACAACCAGAGGGTTGAGGAGCATTACAAAAAGATGGTGGACGAACATCCTGGGAACCCATTGTTTCTCGGAAATTATGCTAATTTTTTGTATCAGACCAAGAGAGACCTTCCTTTAGCAGAGAAATACTACTCTCGTTCGATCCTAGCAGACCCAAACGACGGTGAAATTTTGGCACAATATGCCAAGGTAGTATGGGAGTTGCACCATGATGAAGATAGAGCCTTGAGCTACTATGAACGAGCAGTCCAAGCTGCACCTCAAGATAGCTATGTCCAGGCAGCGTACGCTGGCTTCCTATGGGAAACAGAGGAAGATGAAGCAGATCTGGGACAAGATCTTGGCGCCATGTCGCCATATATTCATGAAGGAATCATGACTTCTGCAAGCGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_19

Protein Analysis

356

Amino Acids

39.34

Weight (kDa)

4.64

Isoelectric Point (pI)

61.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AccB1I GGYRCC 1 cut(s) 1019
AccB7I CCANNNNNTGG 1 cut(s) 32
AciI CCGC 1 cut(s) 618
AclWI GGATC 5 cut(s) 30, 43, 275, 315, 811
AcoI YGGCCR 1 cut(s) 622
AcsI RAATTY 2 cut(s) 410, 843
AcyI GRCGYC 1 cut(s) 1020
AfaI GTAC 1 cut(s) 962
AfiI CCNNNNNNNGG 3 cut(s) 32, 589, 836
AgsI TTSAA 3 cut(s) 21, 86, 455
AjnI CCWGG 3 cut(s) 323, 724, 951
AjuI GAANNNNNNNTTGG 2 cut(s) 54, 86
AloI GAACNNNNNNTCC 2 cut(s) 906, 938
AluBI AGCT 6 cut(s) 15, 59, 562, 906, 929, 945
AluI AGCT 6 cut(s) 15, 59, 562, 906, 929, 945
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 774
AlwI GGATC 5 cut(s) 30, 43, 275, 315, 811
Ama87I CYCGRG 1 cut(s) 370
AoxI GGCC 2 cut(s) 143, 622
ApeKI GCWGC 3 cut(s) 254, 929, 956
ApoI RAATTY 2 cut(s) 410, 843
AspLEI GCGC 2 cut(s) 1022, 1067
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 2 cut(s) 202, 626
AsuHPI GGTGA 7 cut(s) 125, 162, 395, 470, 496, 505, 851
AvaI CYCGRG 1 cut(s) 370
BamHI GGATCC 1 cut(s) 35
BanI GGYRCC 1 cut(s) 1019
BanII GRGCYC 2 cut(s) 17, 220
BarI GAAGNNNNNNTAC 2 cut(s) 953, 985
BauI CACGAG 1 cut(s) 635
Bbv12I GWGCWC 1 cut(s) 17
BbvCI CCTCAGC 1 cut(s) 8
BbvI GCAGC 3 cut(s) 241, 916, 968
BccI CCATC 3 cut(s) 221, 659, 703
BciT130I CCWGG 3 cut(s) 325, 726, 953
BcnI CCSGG 2 cut(s) 202, 626
BcoDI GTCTC 1 cut(s) 774
BfaI CTAG 2 cut(s) 563, 821
BfmI CTRYAG 1 cut(s) 345
BfoI RGCGCY 2 cut(s) 1023, 1068
BglII AGATCT 2 cut(s) 1000, 1012
BisI GCNGC 3 cut(s) 255, 930, 957
BlsI GCNGC 3 cut(s) 256, 931, 958
Bme1390I CCNGG 5 cut(s) 202, 325, 626, 726, 953
BmeT110I CYCGRG 1 cut(s) 370
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 4 cut(s) 37, 166, 731, 1021
BmrFI CCNGG 5 cut(s) 202, 325, 626, 726, 953
BmrI ACTGGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 56
BmuI ACTGGG 1 cut(s) 150
Bpu10I CCTNAGC 1 cut(s) 8
BpuEI CTTGAG 2 cut(s) 921, 922
BpuMI CCSGG 2 cut(s) 202, 626
BsaHI GRCGYC 1 cut(s) 1020
BsaI GGTCTC 1 cut(s) 774
BsaJI CCNNGG 5 cut(s) 324, 504, 625, 725, 861
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 589, 836
Bse1I ACTGG 4 cut(s) 26, 145, 249, 661
BseBI CCWGG 3 cut(s) 325, 726, 953
BseDI CCNNGG 5 cut(s) 324, 504, 625, 725, 861
BseGI GGATG 1 cut(s) 721
BseLI CCNNNNNNNGG 3 cut(s) 32, 589, 836
BseMII CTCAG 2 cut(s) 69, 233
BseNI ACTGG 4 cut(s) 26, 145, 249, 661
BseRI GAGGAG 2 cut(s) 25, 707
BseXI GCAGC 3 cut(s) 241, 916, 968
BsgI GTGCAG 1 cut(s) 915
BshFI GGCC 2 cut(s) 145, 624
BshNI GGYRCC 1 cut(s) 1019
BsiHKAI GWGCWC 1 cut(s) 17
BsiHKCI CYCGRG 1 cut(s) 370
BsiSI CCGG 2 cut(s) 201, 625
BsiWI CGTACG 1 cut(s) 960
BslFI GGGAC 2 cut(s) 606, 1020
BslI CCNNNNNNNGG 3 cut(s) 32, 589, 836
BsmAI GTCTC 1 cut(s) 774
BsmFI GGGAC 2 cut(s) 606, 1020
BsnI GGCC 2 cut(s) 145, 624
Bso31I GGTCTC 1 cut(s) 774
BsoBI CYCGRG 1 cut(s) 370
Bsp1286I GDGCHC 2 cut(s) 17, 220
Bsp143I GATC 7 cut(s) 35, 190, 280, 320, 816, 1000, 1012
BspACI CCGC 1 cut(s) 618
BspANI GGCC 2 cut(s) 145, 624
BspCNI CTCAG 2 cut(s) 68, 232
BspHI TCATGA 2 cut(s) 1039, 1050
BspLI GGNNCC 4 cut(s) 37, 166, 731, 1021
BspPI GGATC 5 cut(s) 30, 43, 275, 315, 811
BspQI GCTCTTC 1 cut(s) 22
BspT107I GGYRCC 1 cut(s) 1019
BspTNI GGTCTC 1 cut(s) 774
BsrI ACTGG 4 cut(s) 26, 145, 249, 661
BssECI CCNNGG 5 cut(s) 324, 504, 625, 725, 861
BssMI GATC 7 cut(s) 35, 190, 280, 320, 816, 1000, 1012
BssNI GRCGYC 1 cut(s) 1020
BssSI CACGAG 1 cut(s) 635
BssT1I CCWWGG 1 cut(s) 861
Bst2BI CACGAG 1 cut(s) 635
Bst2UI CCWGG 3 cut(s) 325, 726, 953
Bst4CI ACNGT 3 cut(s) 164, 336, 839
Bst6I CTCTTC 3 cut(s) 22, 414, 471
BstACI GRCGYC 1 cut(s) 1020
BstAPI GCANNNNNTGC 1 cut(s) 857
BstC8I GCNNGC 2 cut(s) 967, 1063
BstDEI CTNAG 4 cut(s) 8, 55, 120, 219
BstENI CCTNNNNNAGG 1 cut(s) 587
BstF5I GGATG 1 cut(s) 721
BstH2I RGCGCY 2 cut(s) 1023, 1068
BstHHI GCGC 2 cut(s) 1022, 1067
BstKTI GATC 7 cut(s) 38, 193, 283, 323, 819, 1003, 1015
BstMAI GTCTC 1 cut(s) 774
BstMBI GATC 7 cut(s) 35, 190, 280, 320, 816, 1000, 1012
BstMWI GCNNNNNNNGC 4 cut(s) 254, 857, 926, 962
BstNI CCWGG 3 cut(s) 325, 726, 953
BstSCI CCNGG 5 cut(s) 200, 323, 624, 724, 951
BstSFI CTRYAG 1 cut(s) 345
BstV1I GCAGC 3 cut(s) 241, 916, 968
BstX2I RGATCY 4 cut(s) 35, 320, 1000, 1012
BstYI RGATCY 4 cut(s) 35, 320, 1000, 1012
BsuRI GGCC 2 cut(s) 145, 624
BtsCI GGATG 1 cut(s) 721
BtsIMutI CAGTG 1 cut(s) 654
Cac8I GCNNGC 2 cut(s) 967, 1063
CciI TCATGA 2 cut(s) 1039, 1050
CfoI GCGC 2 cut(s) 1022, 1067
Cfr13I GGNCC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 961
CviAII CATG 7 cut(s) 272, 445, 511, 884, 1024, 1040, 1051
CviQI GTAC 1 cut(s) 961
DdeI CTNAG 4 cut(s) 8, 55, 120, 219
DinI GGCGCC 1 cut(s) 1021
DpnI GATC 7 cut(s) 37, 192, 282, 322, 818, 1002, 1014
DpnII GATC 7 cut(s) 35, 190, 280, 320, 816, 1000, 1012
EaeI YGGCCR 1 cut(s) 622
Eam1104I CTCTTC 3 cut(s) 22, 414, 471
EarI CTCTTC 3 cut(s) 22, 414, 471
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 861
Eco24I GRGCYC 2 cut(s) 17, 220
Eco31I GGTCTC 1 cut(s) 774
Eco53kI GAGCTC 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 370
EcoICRI GAGCTC 1 cut(s) 15
EcoNI CCTNNNNNAGG 1 cut(s) 587
EcoRII CCWGG 3 cut(s) 323, 724, 951
EcoT14I CCWWGG 1 cut(s) 861
EcoT38I GRGCYC 2 cut(s) 17, 220
EgeI GGCGCC 1 cut(s) 1021
EheI GGCGCC 1 cut(s) 1021
ErhI CCWWGG 1 cut(s) 861
FaeI CATG 7 cut(s) 275, 448, 514, 887, 1027, 1043, 1054
FaqI GGGAC 2 cut(s) 606, 1020
FatI CATG 7 cut(s) 271, 444, 510, 883, 1023, 1039, 1050
Fnu4HI GCNGC 3 cut(s) 255, 930, 957
FokI GGATG 1 cut(s) 708
FriOI GRGCYC 2 cut(s) 17, 220
Fsp4HI GCNGC 3 cut(s) 255, 930, 957
FspBI CTAG 2 cut(s) 563, 821
GlaI GCGC 2 cut(s) 1021, 1066
GluI GCNGC 3 cut(s) 255, 930, 957
HaeII RGCGCY 2 cut(s) 1023, 1068
HaeIII GGCC 2 cut(s) 145, 624
HapII CCGG 2 cut(s) 201, 625
HhaI GCGC 2 cut(s) 1022, 1067
Hin1I GRCGYC 1 cut(s) 1020
Hin1II CATG 7 cut(s) 275, 448, 514, 887, 1027, 1043, 1054
Hin6I GCGC 2 cut(s) 1020, 1065
HinP1I GCGC 2 cut(s) 1020, 1065
HinfI GANTC 3 cut(s) 350, 441, 1047
HpaII CCGG 2 cut(s) 201, 625
HphI GGTGA 7 cut(s) 125, 162, 395, 470, 496, 505, 851
Hpy166II GTNNAC 2 cut(s) 68, 715
Hpy188I TCNGA 5 cut(s) 213, 226, 505, 746, 771
Hpy188III TCNNGA 6 cut(s) 318, 572, 635, 938, 1040, 1051
Hpy8I GTNNAC 2 cut(s) 68, 715
Hpy99I CGWCG 1 cut(s) 839
HpyAV CCTTC 6 cut(s) 50, 449, 475, 484, 794, 1037
HpyCH4III ACNGT 3 cut(s) 164, 336, 839
HpyCH4V TGCA 9 cut(s) 47, 238, 340, 523, 580, 587, 880, 932, 1061
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 857, 926, 962
HpyF3I CTNAG 4 cut(s) 8, 55, 120, 219
Hsp92I GRCGYC 1 cut(s) 1020
Hsp92II CATG 7 cut(s) 275, 448, 514, 887, 1027, 1043, 1054
HspAI GCGC 2 cut(s) 1020, 1065
KasI GGCGCC 1 cut(s) 1019
Kzo9I GATC 7 cut(s) 35, 190, 280, 320, 816, 1000, 1012
LguI GCTCTTC 1 cut(s) 22
LmnI GCTCC 2 cut(s) 12, 694
Lsp1109I GCAGC 3 cut(s) 241, 916, 968
LweI GCATC 1 cut(s) 56
MaeI CTAG 2 cut(s) 563, 821
MaeIII GTNAC 1 cut(s) 632
MalI GATC 7 cut(s) 37, 192, 282, 322, 818, 1002, 1014
MboI GATC 7 cut(s) 35, 190, 280, 320, 816, 1000, 1012
MflI RGATCY 4 cut(s) 35, 320, 1000, 1012
MhlI GDGCHC 2 cut(s) 17, 220
MluCI AATT 5 cut(s) 410, 643, 748, 757, 843
Mly113I GGCGCC 1 cut(s) 1020
MlyI GAGTC 1 cut(s) 450
MslI CAYNNNNRTG 2 cut(s) 276, 885
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 2 cut(s) 201, 625
MspR9I CCNGG 5 cut(s) 202, 325, 626, 726, 953
MvaI CCWGG 3 cut(s) 325, 726, 953
MwoI GCNNNNNNNGC 4 cut(s) 254, 857, 926, 962
NarI GGCGCC 1 cut(s) 1020
NciI CCSGG 2 cut(s) 202, 626
NdeII GATC 7 cut(s) 35, 190, 280, 320, 816, 1000, 1012
NlaIII CATG 7 cut(s) 275, 448, 514, 887, 1027, 1043, 1054
NlaIV GGNNCC 4 cut(s) 37, 166, 731, 1021
NmuCI GTSAC 1 cut(s) 632
PagI TCATGA 2 cut(s) 1039, 1050
PciSI GCTCTTC 1 cut(s) 22
PfeI GAWTC 2 cut(s) 350, 1047
Pfl23II CGTACG 1 cut(s) 960
PflMI CCANNNNNTGG 1 cut(s) 32
PkrI GCNGC 3 cut(s) 256, 931, 958
PleI GAGTC 1 cut(s) 449
PluTI GGCGCC 1 cut(s) 1023
PpsI GAGTC 1 cut(s) 449
PsiI TTATAA 1 cut(s) 366
Psp124BI GAGCTC 1 cut(s) 17
Psp6I CCWGG 3 cut(s) 323, 724, 951
PspGI CCWGG 3 cut(s) 323, 724, 951
PspLI CGTACG 1 cut(s) 960
PspN4I GGNNCC 4 cut(s) 37, 166, 731, 1021
PspPI GGNCC 1 cut(s) 143
PsuI RGATCY 4 cut(s) 35, 320, 1000, 1012
PvuII CAGCTG 1 cut(s) 59
RsaI GTAC 1 cut(s) 962
RsaNI GTAC 1 cut(s) 961
RseI CAYNNNNRTG 2 cut(s) 276, 885
SacI GAGCTC 1 cut(s) 17
SapI GCTCTTC 1 cut(s) 22
SatI GCNGC 3 cut(s) 255, 930, 957
Sau3AI GATC 7 cut(s) 35, 190, 280, 320, 816, 1000, 1012
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 1 cut(s) 450
ScrFI CCNGG 5 cut(s) 202, 325, 626, 726, 953
SduI GDGCHC 2 cut(s) 17, 220
SfaNI GCATC 1 cut(s) 56
SfcI CTRYAG 1 cut(s) 345
SfoI GGCGCC 1 cut(s) 1021
SmiMI CAYNNNNRTG 2 cut(s) 276, 885
SmlI CTYRAG 2 cut(s) 901, 936
SmoI CTYRAG 2 cut(s) 901, 936
Sse9I AATT 5 cut(s) 410, 643, 748, 757, 843
SsiI CCGC 1 cut(s) 618
SspDI GGCGCC 1 cut(s) 1019
SspMI CTAG 2 cut(s) 563, 821
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 5 cut(s) 200, 323, 624, 724, 951
StyI CCWWGG 1 cut(s) 861
TaaI ACNGT 3 cut(s) 164, 336, 839
TaqI TCGA 4 cut(s) 317, 359, 571, 815
TasI AATT 5 cut(s) 410, 643, 748, 757, 843
TfiI GAWTC 2 cut(s) 350, 1047
TscAI CASTG 1 cut(s) 661
TseFI GTSAC 1 cut(s) 632
TseI GCWGC 3 cut(s) 254, 929, 956
Tsp45I GTSAC 1 cut(s) 632
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 1 cut(s) 661
Van91I CCANNNNNTGG 1 cut(s) 32
XagI CCTNNNNNAGG 1 cut(s) 587
XapI RAATTY 2 cut(s) 410, 843
XspI CTAG 2 cut(s) 563, 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.