MD06G1001000.v1.1

Protein of unknown function, DUF547

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
97333 .. 101353
4021 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1001000.v1.1.491

Sequence Viewer

Length: 1503 bp
ATGAAGAGCGCTACTTCTGACGAGATTGATGGACTCCTCTCCTTGTTTAACCCTGTTACTGCACAGTTGGATAGGATTTCCCTTGATCGGGCTTCCCTTTGCTGGGATTCTGACAAGGCGCTGGGTTCTAGTTCCGTCAACTCTTTTGCTTCCCTTGCCACTCCAACACCAAAGTCTTGTACAGAGCTGAAGGAGGAGATTGACATACTTGAGCTTGAAATTATGCATTTAGAGCGTCATCTTCTTTCACTGTATCGAACAGCTTTTCAAGGATGCTCTTTGCCAGGTACTCCAGAAAGCCATTTACAATTTAAAACAGGACGTTCCAAATTGGAGCTGCAAATGCACAGAGATGAATTGACCTATCATGATCAAACTTCCCCCGCGTATCTCCAGGCTAGCTCAGATAATCGAAGTAGTGCGACTGGCATAAAAGTACCATCTGAAAAGGACCGCAAAATTGCTAATTCTTGTCATCGCAGCCTAGCGGATCATCTTGGTGATTCTCTCAATGATAGTACCCTTAATACTCCGGATAGACTTTCTGAAGATATCGTGAGATGCATCGCTTCTATATACTGCAAACTCGCCAATCCCCAAAACTATGCACGCCTGTCAGCTTCTCCTACTTCATCCTTATCCTCCTCAAGTATATTTTCTTCTAAGAATCCTTGTGATAGTTGGAGTCCACATTGCAATAAGGAAGCTACAATGCATCCACAAGGGTTGAAAGAAAAAAGTGGACCTTGTGCTACAATGACCGAAGTTTCAAAGATATGTTTAGATGAAGACAGCTTCAATTGTGCGGTTATGATGCTGCAAAATTTCAGGTCATTGGTCCAAAGTCTAGAGAAGGTTGACTTCCTGAAGATGAAACGTGAGCAGAAGCTTGTGTTCTGGATTAACATTCACAATGCCTTGGTGATGCATGCATACCTGGCATATGGAACTCATAATCGTGCGAAAAGTAGTTCAATTTTAAATGCAGCGTATAATATAGGTGGACATAGCATAAATGCGTATATCATTCAGACCTCCATCTTAGGAATCCAAGCACACCGCTCAGCACCGTGGCGACAAACATTGTTTCATTCAGGAAAGAAGTTGAAGACGGGGAGCATTAGACATGTGTACGCATTAGAATACCCTGAGCCTCTAGTCCATTTTGCTCTATGTTCAGGGGCATACACTGACCCAGCGGTTCGAGCATACACGGCGAAGAGCGTATTTCAGGATCTGAAACTTGCTCAAACAGATTTCATTCAAGCTGGTGTCTCGTGCAAGGAGACAAAAGTTTTCCTCCCTAAAATACTTGACTACTATGCAAAAGACATGTCACTGGGTACGGTAGGCCTCTTGGAGGAAATAAATGATTGTCTTTCGGATATTCAAAAGAAAGCTATCAGAAGCTGCATGCAAGGAAAGCTTGACAATTACATACATTGGCTACCTCAGAGTTCAACCTTTCGGTATGTGATCCATGAGGATGTAACCAATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

501

Amino Acids

55.72

Weight (kDa)

7.26

Isoelectric Point (pI)

52.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lzipper-MIP1 PF14389 39 - 90 9e-09 Leucine-zipper of ternary complex factor MIP1
DUF547 PF04784 290 - 421 2.2e-34 Protein of unknown function, DUF547
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1062
AccII CGCG 1 cut(s) 386
AccIII TCCGGA 1 cut(s) 532
AciI CCGC 6 cut(s) 384, 454, 488, 806, 1060, 1199
AclWI GGATC 3 cut(s) 498, 1242, 1471
AcsI RAATTY 1 cut(s) 823
AcuI CTGAAG 3 cut(s) 209, 567, 887
AfaI GTAC 6 cut(s) 181, 289, 438, 520, 1133, 1345
AfeI AGCGCT 1 cut(s) 10
AfiI CCNNNNNNNGG 5 cut(s) 87, 88, 102, 103, 1360
AflIII ACRYGT 2 cut(s) 1126, 1332
AjnI CCWGG 3 cut(s) 283, 393, 936
Alw26I GTCTC 2 cut(s) 1279, 1280
AlwI GGATC 3 cut(s) 498, 1242, 1471
AlwNI CAGNNNCTG 2 cut(s) 1237, 1410
Aor13HI TCCGGA 1 cut(s) 532
Aor51HI AGCGCT 1 cut(s) 10
AoxI GGCC 1 cut(s) 1351
ApeKI GCWGC 5 cut(s) 337, 480, 817, 986, 1410
ApoI RAATTY 1 cut(s) 823
ArsI GACNNNNNNTTYG 2 cut(s) 1319, 1351
AspLEI GCGC 2 cut(s) 11, 121
AspS9I GGNCC 3 cut(s) 451, 743, 838
AsuHPI GGTGA 2 cut(s) 512, 934
AsuNHI GCTAGC 1 cut(s) 398
AvaII GGWCC 3 cut(s) 451, 743, 838
BarI GAAGNNNNNNTAC 2 cut(s) 643, 675
BauI CACGAG 1 cut(s) 1276
BbsI GAAGAC 2 cut(s) 795, 1115
BbvI GCAGC 5 cut(s) 324, 492, 804, 998, 1397
BccI CCATC 3 cut(s) 23, 448, 1046
BceAI ACGGC 1 cut(s) 1230
BciT130I CCWGG 3 cut(s) 285, 395, 938
BclI TGATCA 1 cut(s) 370
BcoDI GTCTC 2 cut(s) 1279, 1280
BfaI CTAG 5 cut(s) 129, 399, 485, 848, 1157
BfoI RGCGCY 2 cut(s) 12, 122
BisI GCNGC 5 cut(s) 338, 481, 818, 987, 1411
BlpI GCTNAGC 1 cut(s) 1063
BlsI GCNGC 5 cut(s) 339, 482, 819, 988, 1412
Bme1390I CCNGG 3 cut(s) 285, 395, 938
Bme18I GGWCC 3 cut(s) 451, 743, 838
BmgT120I GGNCC 3 cut(s) 451, 743, 838
BmrFI CCNGG 3 cut(s) 285, 395, 938
BmrI ACTGGG 1 cut(s) 1349
BmsI GCATC 6 cut(s) 263, 551, 573, 724, 804, 915
BmtI GCTAGC 1 cut(s) 402
BmuI ACTGGG 1 cut(s) 1349
BpiI GAAGAC 2 cut(s) 795, 1115
BpmI CTGGAG 2 cut(s) 276, 377
Bpu10I CCTNAGC 1 cut(s) 1149
Bpu1102I GCTNAGC 1 cut(s) 1063
BpuEI CTTGAG 2 cut(s) 230, 631
BsaJI CCNNGG 2 cut(s) 918, 1070
BsaWI WCCGGW 1 cut(s) 532
Bsc4I CCNNNNNNNGG 5 cut(s) 87, 88, 102, 103, 1360
Bse1I ACTGG 2 cut(s) 430, 1344
Bse3DI GCAATG 1 cut(s) 691
BseAI TCCGGA 1 cut(s) 532
BseBI CCWGG 3 cut(s) 285, 395, 938
BseDI CCNNGG 2 cut(s) 918, 1070
BseGI GGATG 4 cut(s) 278, 632, 715, 1492
BseLI CCNNNNNNNGG 5 cut(s) 87, 88, 102, 103, 1360
BseMI GCAATG 1 cut(s) 691
BseMII CTCAG 4 cut(s) 417, 1077, 1140, 1466
BseNI ACTGG 2 cut(s) 430, 1344
BseRI GAGGAG 3 cut(s) 26, 209, 634
BseXI GCAGC 5 cut(s) 324, 492, 804, 998, 1397
BseYI CCCAGC 3 cut(s) 102, 121, 1195
BsgI GTGCAG 1 cut(s) 45
Bsh1236I CGCG 1 cut(s) 386
BshFI GGCC 1 cut(s) 1353
BsiSI CCGG 1 cut(s) 533
BslI CCNNNNNNNGG 5 cut(s) 87, 88, 102, 103, 1360
BsmAI GTCTC 2 cut(s) 1279, 1280
BsnI GGCC 1 cut(s) 1353
Bsp13I TCCGGA 1 cut(s) 532
Bsp1407I TGTACA 1 cut(s) 179
Bsp143I GATC 5 cut(s) 85, 370, 490, 1234, 1476
Bsp1720I GCTNAGC 1 cut(s) 1063
BspACI CCGC 6 cut(s) 384, 454, 488, 806, 1060, 1199
BspANI GGCC 1 cut(s) 1353
BspCNI CTCAG 4 cut(s) 416, 1076, 1141, 1465
BspEI TCCGGA 1 cut(s) 532
BspFNI CGCG 1 cut(s) 386
BspHI TCATGA 1 cut(s) 367
BspOI GCTAGC 1 cut(s) 402
BspPI GGATC 3 cut(s) 498, 1242, 1471
BspQI GCTCTTC 1 cut(s) 1214
BsrBI CCGCTC 1 cut(s) 1062
BsrDI GCAATG 1 cut(s) 691
BsrGI TGTACA 1 cut(s) 179
BsrI ACTGG 2 cut(s) 430, 1344
BssECI CCNNGG 2 cut(s) 918, 1070
BssMI GATC 5 cut(s) 85, 370, 490, 1234, 1476
BssSI CACGAG 1 cut(s) 1276
BssT1I CCWWGG 1 cut(s) 918
Bst2BI CACGAG 1 cut(s) 1276
Bst2UI CCWGG 3 cut(s) 285, 395, 938
Bst4CI ACNGT 4 cut(s) 66, 252, 1071, 1348
Bst6I CTCTTC 1 cut(s) 1214
BstAUI TGTACA 1 cut(s) 179
BstC8I GCNNGC 4 cut(s) 400, 610, 930, 1415
BstDEI CTNAG 6 cut(s) 403, 663, 1042, 1063, 1149, 1452
BstDSI CCRYGG 1 cut(s) 1070
BstENI CCTNNNNNAGG 1 cut(s) 1358
BstF5I GGATG 4 cut(s) 278, 632, 715, 1492
BstFNI CGCG 1 cut(s) 386
BstH2I RGCGCY 2 cut(s) 12, 122
BstHHI GCGC 2 cut(s) 11, 121
BstKTI GATC 5 cut(s) 88, 373, 493, 1237, 1479
BstMAI GTCTC 2 cut(s) 1279, 1280
BstMBI GATC 5 cut(s) 85, 370, 490, 1234, 1476
BstMWI GCNNNNNNNGC 7 cut(s) 155, 232, 343, 938, 1205, 1214, 1423
BstNI CCWGG 3 cut(s) 285, 395, 938
BstNSI RCATGY 4 cut(s) 932, 1130, 1336, 1417
BstSCI CCNGG 3 cut(s) 283, 393, 936
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 5 cut(s) 324, 492, 804, 998, 1397
BstV2I GAAGAC 2 cut(s) 795, 1115
BstX2I RGATCY 1 cut(s) 1234
BstYI RGATCY 1 cut(s) 1234
BsuRI GGCC 1 cut(s) 1353
BtgI CCRYGG 1 cut(s) 1070
BtgZI GCGATG 2 cut(s) 461, 550
BtsCI GGATG 4 cut(s) 278, 632, 715, 1492
BtsIMutI CAGTG 3 cut(s) 248, 1188, 1337
Cac8I GCNNGC 4 cut(s) 400, 610, 930, 1415
CaiI CAGNNNCTG 2 cut(s) 1237, 1410
CciI TCATGA 1 cut(s) 367
CfoI GCGC 2 cut(s) 11, 121
Cfr13I GGNCC 3 cut(s) 451, 743, 838
CseI GACGC 1 cut(s) 224
Csp6I GTAC 6 cut(s) 180, 288, 437, 519, 1132, 1344
CspCI CAANNNNNGTGG 2 cut(s) 708, 743
CviAII CATG 6 cut(s) 368, 929, 1127, 1333, 1414, 1481
CviQI GTAC 6 cut(s) 180, 288, 437, 519, 1132, 1344
DdeI CTNAG 6 cut(s) 403, 663, 1042, 1063, 1149, 1452
DpnI GATC 5 cut(s) 87, 372, 492, 1236, 1478
DpnII GATC 5 cut(s) 85, 370, 490, 1234, 1476
DraI TTTAAA 2 cut(s) 313, 981
Eam1104I CTCTTC 1 cut(s) 1214
EarI CTCTTC 1 cut(s) 1214
Eco130I CCWWGG 1 cut(s) 918
Eco147I AGGCCT 1 cut(s) 1353
Eco32I GATATC 1 cut(s) 553
Eco47I GGWCC 3 cut(s) 451, 743, 838
Eco47III AGCGCT 1 cut(s) 10
Eco57I CTGAAG 3 cut(s) 209, 567, 887
EcoNI CCTNNNNNAGG 1 cut(s) 1358
EcoRII CCWGG 3 cut(s) 283, 393, 936
EcoRV GATATC 1 cut(s) 553
EcoT14I CCWWGG 1 cut(s) 918
EcoT22I ATGCAT 5 cut(s) 228, 566, 717, 930, 934
ErhI CCWWGG 1 cut(s) 918
FaeI CATG 6 cut(s) 371, 932, 1130, 1336, 1417, 1484
FalI AAGNNNNNCTT 6 cut(s) 730, 762, 845, 877, 1410, 1442
FatI CATG 6 cut(s) 367, 928, 1126, 1332, 1413, 1480
FauI CCCGC 1 cut(s) 391
FauNDI CATATG 1 cut(s) 943
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 5 cut(s) 338, 481, 818, 987, 1411
FokI GGATG 4 cut(s) 285, 619, 702, 1499
Fsp4HI GCNGC 5 cut(s) 338, 481, 818, 987, 1411
FspBI CTAG 5 cut(s) 129, 399, 485, 848, 1157
GlaI GCGC 2 cut(s) 10, 120
GluI GCNGC 5 cut(s) 338, 481, 818, 987, 1411
GsaI CCCAGC 3 cut(s) 106, 125, 1199
GsuI CTGGAG 2 cut(s) 276, 377
HaeII RGCGCY 2 cut(s) 12, 122
HaeIII GGCC 1 cut(s) 1353
HapII CCGG 1 cut(s) 533
HgaI GACGC 1 cut(s) 224
HhaI GCGC 2 cut(s) 11, 121
Hin1II CATG 6 cut(s) 371, 932, 1130, 1336, 1417, 1484
Hin6I GCGC 2 cut(s) 9, 119
HinP1I GCGC 2 cut(s) 9, 119
HincII GTYRAC 2 cut(s) 139, 859
HindII GTYRAC 2 cut(s) 139, 859
HindIII AAGCTT 2 cut(s) 887, 1424
HinfI GANTC 6 cut(s) 33, 107, 503, 667, 685, 1047
HpaII CCGG 1 cut(s) 533
HphI GGTGA 2 cut(s) 512, 934
Hpy166II GTNNAC 6 cut(s) 139, 689, 743, 859, 1004, 1132
Hpy188III TCNNGA 9 cut(s) 293, 368, 533, 556, 848, 865, 898, 1095, 1232
Hpy8I GTNNAC 6 cut(s) 139, 689, 743, 859, 1004, 1132
HpyAV CCTTC 2 cut(s) 184, 847
HpyCH4III ACNGT 4 cut(s) 66, 252, 1071, 1348
HpyCH4IV ACGT 2 cut(s) 322, 877
HpyF10VI GCNNNNNNNGC 7 cut(s) 155, 232, 343, 938, 1205, 1214, 1423
HpyF3I CTNAG 6 cut(s) 403, 663, 1042, 1063, 1149, 1452
HpySE526I ACGT 2 cut(s) 322, 877
Hsp92II CATG 6 cut(s) 371, 932, 1130, 1336, 1417, 1484
HspAI GCGC 2 cut(s) 9, 119
Kpn2I TCCGGA 1 cut(s) 532
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 5 cut(s) 85, 370, 490, 1234, 1476
LguI GCTCTTC 1 cut(s) 1214
LmnI GCTCC 2 cut(s) 334, 1116
Lsp1109I GCAGC 5 cut(s) 324, 492, 804, 998, 1397
LweI GCATC 6 cut(s) 263, 551, 573, 724, 804, 915
MaeI CTAG 5 cut(s) 129, 399, 485, 848, 1157
MaeII ACGT 2 cut(s) 322, 877
MaeIII GTNAC 3 cut(s) 55, 1335, 1489
MalI GATC 5 cut(s) 87, 372, 492, 1236, 1478
MbiI CCGCTC 1 cut(s) 1062
MboI GATC 5 cut(s) 85, 370, 490, 1234, 1476
MboII GAAGA 8 cut(s) 16, 233, 560, 651, 800, 880, 1120, 1231
MfeI CAATTG 1 cut(s) 799
MflI RGATCY 1 cut(s) 1234
MlyI GAGTC 2 cut(s) 27, 694
MmeI TCCRAC 3 cut(s) 48, 188, 662
Mph1103I ATGCAT 5 cut(s) 228, 566, 717, 930, 934
MroI TCCGGA 1 cut(s) 532
MseI TTAA 5 cut(s) 48, 312, 525, 903, 980
MslI CAYNNNNRTG 4 cut(s) 351, 498, 957, 1485
MspA1I CMGCKG 1 cut(s) 1199
MspI CCGG 1 cut(s) 533
MspR9I CCNGG 3 cut(s) 285, 395, 938
MunI CAATTG 1 cut(s) 799
MvaI CCWGG 3 cut(s) 285, 395, 938
MvnI CGCG 1 cut(s) 386
MwoI GCNNNNNNNGC 7 cut(s) 155, 232, 343, 938, 1205, 1214, 1423
NdeI CATATG 1 cut(s) 943
NdeII GATC 5 cut(s) 85, 370, 490, 1234, 1476
NheI GCTAGC 1 cut(s) 398
NlaIII CATG 6 cut(s) 371, 932, 1130, 1336, 1417, 1484
NmuCI GTSAC 1 cut(s) 1335
NsiI ATGCAT 5 cut(s) 228, 566, 717, 930, 934
NspI RCATGY 4 cut(s) 932, 1130, 1336, 1417
PaeI GCATGC 2 cut(s) 932, 1417
PagI TCATGA 1 cut(s) 367
PceI AGGCCT 1 cut(s) 1353
PciI ACATGT 2 cut(s) 1126, 1332
PciSI GCTCTTC 1 cut(s) 1214
PfeI GAWTC 4 cut(s) 107, 503, 667, 1047
PkrI GCNGC 5 cut(s) 339, 482, 819, 988, 1412
PleI GAGTC 2 cut(s) 27, 693
PpsI GAGTC 2 cut(s) 27, 693
PscI ACATGT 2 cut(s) 1126, 1332
Psp6I CCWGG 3 cut(s) 283, 393, 936
PspFI CCCAGC 3 cut(s) 102, 121, 1195
PspGI CCWGG 3 cut(s) 283, 393, 936
PspPI GGNCC 3 cut(s) 451, 743, 838
PstNI CAGNNNCTG 2 cut(s) 1237, 1410
PsuI RGATCY 1 cut(s) 1234
RsaI GTAC 6 cut(s) 181, 289, 438, 520, 1133, 1345
RsaNI GTAC 6 cut(s) 180, 288, 437, 519, 1132, 1344
RseI CAYNNNNRTG 4 cut(s) 351, 498, 957, 1485
SapI GCTCTTC 1 cut(s) 1214
SaqAI TTAA 5 cut(s) 48, 312, 525, 903, 980
SatI GCNGC 5 cut(s) 338, 481, 818, 987, 1411
Sau3AI GATC 5 cut(s) 85, 370, 490, 1234, 1476
Sau96I GGNCC 3 cut(s) 451, 743, 838
SchI GAGTC 2 cut(s) 27, 694
ScrFI CCNGG 3 cut(s) 285, 395, 938
SfaNI GCATC 6 cut(s) 263, 551, 573, 724, 804, 915
SinI GGWCC 3 cut(s) 451, 743, 838
SmiMI CAYNNNNRTG 4 cut(s) 351, 498, 957, 1485
SmlI CTYRAG 2 cut(s) 209, 646
SmoI CTYRAG 2 cut(s) 209, 646
SphI GCATGC 2 cut(s) 932, 1417
SseBI AGGCCT 1 cut(s) 1353
SsiI CCGC 6 cut(s) 384, 454, 488, 806, 1060, 1199
SspMI CTAG 5 cut(s) 129, 399, 485, 848, 1157
StuI AGGCCT 1 cut(s) 1353
StyD4I CCNGG 3 cut(s) 283, 393, 936
StyI CCWWGG 1 cut(s) 918
TaaI ACNGT 4 cut(s) 66, 252, 1071, 1348
TaiI ACGT 2 cut(s) 325, 880
TaqI TCGA 3 cut(s) 256, 412, 1204
TaqII GACCGA 1 cut(s) 776
TatI WGTACW 1 cut(s) 179
TfiI GAWTC 4 cut(s) 107, 503, 667, 1047
Tru1I TTAA 5 cut(s) 48, 312, 525, 903, 980
Tru9I TTAA 5 cut(s) 48, 312, 525, 903, 980
TscAI CASTG 3 cut(s) 255, 1195, 1344
TseFI GTSAC 1 cut(s) 1335
TseI GCWGC 5 cut(s) 337, 480, 817, 986, 1410
Tsp45I GTSAC 1 cut(s) 1335
TspDTI ATGAA 7 cut(s) 17, 369, 621, 801, 887, 1079, 1249
TspGWI ACGGA 1 cut(s) 124
TspRI CASTG 3 cut(s) 255, 1195, 1344
VpaK11BI GGWCC 3 cut(s) 451, 743, 838
XagI CCTNNNNNAGG 1 cut(s) 1358
XapI RAATTY 1 cut(s) 823
XbaI TCTAGA 1 cut(s) 847
XceI RCATGY 4 cut(s) 932, 1130, 1336, 1417
XspI CTAG 5 cut(s) 129, 399, 485, 848, 1157
Zsp2I ATGCAT 5 cut(s) 228, 566, 717, 930, 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.