Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8214236.1

Orthogroup ID

OG0005669

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 705

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8214236.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ttgcaggaccagaaaaccgctgattctcgtcatcgcagtcgcagccttggggatcatctaggtgcttctcgcattgatagttcccttaatactccggatagagtttctgaagatattgtaagatgcatctcttctatatactgcaaacttgccgctccccaagctcaagttgcactatcagcttctcctacttcatccttagcttcatcaagtatattttcttcaaagaatcattgtgacagttggagtccatattgcaatgacgatgctacaacagatcatgaagggttcaaagataataatggaccatacactacaatgatagaagtgttgaagatatgcttagatgatgacagcttcaattatgctgctcaaatgctacaaaatttcaggtcattggttcgaagtcttgagaaggttgatgttctgaagatgaagcgtgaagagaagcttgttttctggattaatattcacaatgccttggtgatgcatgtaagcttcctgatcttttttttggtgaattatgcttcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1

Protein Analysis

177

Amino Acids

19.89

Weight (kDa)

6.05

Isoelectric Point (pI)

59.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21060 AT1G21060 AT1G76620 AT1G76620
fragaria_vesca	FvH4_5g26610 FvH4_5g26610
malus_domestica	MD06G1001000.v1.1
prunus_persica	Prupe.5G001300_v2.0.a1 Prupe.5G001300_v2.0.a1 Prupe.5G001300_v2.0.a1 Prupe.5G001300_v2.0.a1 Prupe.5G001300_v2.0.a1
pyrus_communis	pycom06g00020
rosa_chinensis	RchiOBHm_Chr7g0217551
rosa_laevigata	RLG00000002462
rosa_multiflora	Rmu_co8121272.1_g000001 Rmu_co8214236.1_g000001 Rmu_sc0004631.1_g000001 Rmu_sc0006161.1_g000005
rosa_roxburghii	Rroxscaffold_3G00241880
rosa_rugosa	Rorug07G0169700 Rorug07G0169700 Rorug07G0169800
rosa_samantha	Rh7AG309700 Rh7BG300800 Rh7CG328900 Rh7DG309300
rosa_wichuraiana	Rw7G026270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	155
AccIII	TCCGGA	1 cut(s)	94
AciI	CCGC	2 cut(s)	18, 153
AclWI	GGATC	1 cut(s)	60
AcsI	RAATTY	1 cut(s)	385
AcuI	CTGAAG	2 cut(s)	129, 449
AgsI	TTSAA	4 cut(s)	225, 292, 334, 361
AluBI	AGCT	6 cut(s)	164, 182, 203, 357, 451, 498
AluI	AGCT	6 cut(s)	164, 182, 203, 357, 451, 498
AlwI	GGATC	1 cut(s)	60
Aor13HI	TCCGGA	1 cut(s)	94
ApeKI	GCWGC	2 cut(s)	42, 368
ApoI	RAATTY	1 cut(s)	385
AseI	ATTAAT	1 cut(s)	465
AspS9I	GGNCC	2 cut(s)	7, 305
AsuHPI	GGTGA	2 cut(s)	496, 529
AsuII	TTCGAA	1 cut(s)	403
AvaII	GGWCC	2 cut(s)	7, 305
BarI	GAAGNNNNNNTAC	2 cut(s)	205, 237
BbvI	GCAGC	2 cut(s)	54, 355
BfaI	CTAG	1 cut(s)	59
BisI	GCNGC	3 cut(s)	43, 153, 369
BlsI	GCNGC	3 cut(s)	44, 154, 370
Bme18I	GGWCC	2 cut(s)	7, 305
BmgT120I	GGNCC	2 cut(s)	7, 305
BmsI	GCATC	4 cut(s)	113, 135, 256, 477
Bpu10I	CCTNAGC	1 cut(s)	199
Bpu14I	TTCGAA	1 cut(s)	403
BpuEI	CTTGAG	2 cut(s)	150, 431
BsaJI	CCNNGG	2 cut(s)	46, 480
BsaWI	WCCGGW	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	265
BseAI	TCCGGA	1 cut(s)	94
BseDI	CCNNGG	2 cut(s)	46, 480
BseGI	GGATG	1 cut(s)	194
BseMI	GCAATG	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	54, 355
BsiSI	CCGG	1 cut(s)	95
Bsp119I	TTCGAA	1 cut(s)	403
Bsp13I	TCCGGA	1 cut(s)	94
Bsp143I	GATC	3 cut(s)	52, 277, 504
BspACI	CCGC	2 cut(s)	18, 153
BspEI	TCCGGA	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	280
BspPI	GGATC	1 cut(s)	60
BspT104I	TTCGAA	1 cut(s)	403
BsrBI	CCGCTC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	265
BssECI	CCNNGG	2 cut(s)	46, 480
BssMI	GATC	3 cut(s)	52, 277, 504
BssT1I	CCWWGG	2 cut(s)	46, 480
Bst4CI	ACNGT	1 cut(s)	242
Bst6I	CTCTTC	2 cut(s)	136, 438
BstBI	TTCGAA	1 cut(s)	403
BstDEI	CTNAG	2 cut(s)	199, 343
BstF5I	GGATG	1 cut(s)	194
BstKTI	GATC	3 cut(s)	55, 280, 507
BstMBI	GATC	3 cut(s)	52, 277, 504
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 161, 170, 179
BstNSI	RCATGY	1 cut(s)	494
BstV1I	GCAGC	2 cut(s)	54, 355
BtgZI	GCGATG	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	194
CciI	TCATGA	1 cut(s)	280
Cfr13I	GGNCC	2 cut(s)	7, 305
CviAII	CATG	2 cut(s)	281, 491
CviJI	RGCY	7 cut(s)	45, 164, 182, 203, 357, 451, 498
CviKI_1	RGCY	7 cut(s)	45, 164, 182, 203, 357, 451, 498
DdeI	CTNAG	2 cut(s)	199, 343
DpnI	GATC	3 cut(s)	54, 279, 506
DpnII	GATC	3 cut(s)	52, 277, 504
Eam1104I	CTCTTC	2 cut(s)	136, 438
EarI	CTCTTC	2 cut(s)	136, 438
Eco130I	CCWWGG	2 cut(s)	46, 480
Eco47I	GGWCC	2 cut(s)	7, 305
Eco57I	CTGAAG	2 cut(s)	129, 449
EcoT14I	CCWWGG	2 cut(s)	46, 480
EcoT22I	ATGCAT	2 cut(s)	128, 492
ErhI	CCWWGG	2 cut(s)	46, 480
FaeI	CATG	2 cut(s)	284, 494
FalI	AAGNNNNNCTT	4 cut(s)	326, 358, 435, 467
FatI	CATG	2 cut(s)	280, 490
Fnu4HI	GCNGC	3 cut(s)	43, 153, 369
FokI	GGATG	1 cut(s)	181
Fsp4HI	GCNGC	3 cut(s)	43, 153, 369
FspBI	CTAG	1 cut(s)	59
GluI	GCNGC	3 cut(s)	43, 153, 369
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	2 cut(s)	284, 494
HindIII	AAGCTT	2 cut(s)	449, 496
HinfI	GANTC	3 cut(s)	23, 229, 247
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	2 cut(s)	496, 529
Hpy188I	TCNGA	2 cut(s)	109, 429
Hpy188III	TCNNGA	6 cut(s)	95, 281, 410, 460, 502, 531
HpyAV	CCTTC	2 cut(s)	278, 409
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4V	TGCA	6 cut(s)	4, 126, 144, 173, 258, 490
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 161, 170, 179
HpyF3I	CTNAG	2 cut(s)	199, 343
Hsp92II	CATG	2 cut(s)	284, 494
Kpn2I	TCCGGA	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	52, 277, 504
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	5 cut(s)	23, 108, 376, 445, 515
Lsp1109I	GCAGC	2 cut(s)	54, 355
LweI	GCATC	4 cut(s)	113, 135, 256, 477
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	3 cut(s)	54, 279, 506
MbiI	CCGCTC	1 cut(s)	155
MboI	GATC	3 cut(s)	52, 277, 504
MboII	GAAGA	6 cut(s)	122, 123, 213, 346, 442, 455
MluCI	AATT	3 cut(s)	361, 385, 520
MlyI	GAGTC	1 cut(s)	256
MmeI	TCCRAC	1 cut(s)	224
Mph1103I	ATGCAT	2 cut(s)	128, 492
MroI	TCCGGA	1 cut(s)	94
MseI	TTAA	2 cut(s)	87, 465
MslI	CAYNNNNRTG	2 cut(s)	60, 317
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	4 cut(s)	42, 161, 170, 179
NdeII	GATC	3 cut(s)	52, 277, 504
NlaIII	CATG	2 cut(s)	284, 494
NmuCI	GTSAC	1 cut(s)	236
NsiI	ATGCAT	2 cut(s)	128, 492
NspI	RCATGY	1 cut(s)	494
NspV	TTCGAA	1 cut(s)	403
PagI	TCATGA	1 cut(s)	280
PfeI	GAWTC	2 cut(s)	23, 229
PkrI	GCNGC	3 cut(s)	44, 154, 370
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
PshBI	ATTAAT	1 cut(s)	465
PspPI	GGNCC	2 cut(s)	7, 305
RseI	CAYNNNNRTG	2 cut(s)	60, 317
SaqAI	TTAA	2 cut(s)	87, 465
SatI	GCNGC	3 cut(s)	43, 153, 369
Sau3AI	GATC	3 cut(s)	52, 277, 504
Sau96I	GGNCC	2 cut(s)	7, 305
SchI	GAGTC	1 cut(s)	256
SetI	ASST	9 cut(s)	64, 166, 184, 205, 359, 395, 420, 453, 500
SfaNI	GCATC	4 cut(s)	113, 135, 256, 477
SfuI	TTCGAA	1 cut(s)	403
SinI	GGWCC	2 cut(s)	7, 305
SmiMI	CAYNNNNRTG	2 cut(s)	60, 317
SmlI	CTYRAG	2 cut(s)	165, 410
SmoI	CTYRAG	2 cut(s)	165, 410
Sse9I	AATT	3 cut(s)	361, 385, 520
SsiI	CCGC	2 cut(s)	18, 153
SspI	AATATT	1 cut(s)	469
SspMI	CTAG	1 cut(s)	59
StyI	CCWWGG	2 cut(s)	46, 480
TaaI	ACNGT	1 cut(s)	242
TaqI	TCGA	1 cut(s)	403
TasI	AATT	3 cut(s)	361, 385, 520
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	2 cut(s)	23, 229
Tru1I	TTAA	2 cut(s)	87, 465
Tru9I	TTAA	2 cut(s)	87, 465
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	2 cut(s)	42, 368
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	4 cut(s)	183, 195, 297, 449
VpaK11BI	GGWCC	2 cut(s)	7, 305
VspI	ATTAAT	1 cut(s)	465
XapI	RAATTY	1 cut(s)	385
XceI	RCATGY	1 cut(s)	494
XspI	CTAG	1 cut(s)	59
Zsp2I	ATGCAT	2 cut(s)	128, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.