Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005669

Physical Location & Seq

Genomic Coordinates Reverse (-)

34500697 .. 34505094

Gene Structure 4398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002462

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGAATTCCCGAAGAGCTTCTGATAATGGGCTTCTTCAAAATATACTTGGCAAGTCTCCTAGACTATTCTCCTACTTTAGCCCTATTGCACAGTTGGACAGGATTTTACCTGACCAGGCTTCCCTATGTTATGACTCGGAGAAGGCACTGAGTTGTTGTGTCATCAACTCTTCTGCTTCAGATGACACTCCAACACCAAAGTCTTCTGCAGAGCTGGAGGAGGAGATTGCCACACTTGAGCTTGAGATTTTGCATTTAGAACGCCATCTTCTTTCACTATATAGAACAGCTTTTCAAGGATGTGCCTTTCCAAGCACCCCGGATAGCCATTTACAATTTATGACACGATCGCCATTAAAAGTTGTACAGAAGCAACCACGTTCCAGTTTGGAGTTGCAAATGCACAGAGGTGGACCCTTCCATCATGACCAAACTTCCCCTTCATATAGTCGGTTCCACTCAGATCATCACAGGAGTGCCACTAGCATAAAAGCAACACCTAAAAGGGACCAGAAAACTGCTGATTCTCGTCAACGCAGTCGCAGCCTTGGGGATCATCTAGGTGCTTCTCGCATTGATAGTTCCCTTAATACTCCGGATAGAGTTTCTGAAGATATTGTAAGATGCATCTCTTCTATATACTGCAAACTTGCCACTCCCCAAGCTCAAGTCGCACTATCAGCTTCTCCTACTTCATCCTTGGCTGCCTCAAGTATATTTTCTTCAAGGAATCCTTGTGACAGTTGGAGTCCACATTGCAATGACGATGCTACAACAGATCATGAAGGGTTCAAAGATAATAATGGACCATACACTACAATGATAGAAGTGTTGAAGATATGCTTAGATGATGACAGCTTCAATTATGCTGCTCAAATGCTACAAAATTTCAGGTCATTGGTTCGAAGTCTTGAGAAGGTTGATGTTCTGAAGATGAAGCGTGAAGAGAAGCTTGTGTTCTGGATTAATATTCACAATGCCTTGGTGATGCATGCATTCTTGGCATATGGAACACATAATCGTGCGAAAAGTACTTCAATTTTGAAGGCAGCCTACAACATAGGGGGACATTTCATAAATGCATATGTCATACAGAGCTCCATTTTAGGAATTCGAGCACACCATGCAGCACCGAAGAAAGTGAATTCATGGTCACAAATTCGCCTTTCGAATCATGTTCAACTAAACTTTGGACATCAAATCACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1

Protein Analysis

403

Amino Acids

44.91

Weight (kDa)

8.65

Isoelectric Point (pI)

57.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lzipper-MIP1	PF14389	30 - 99	1.1e-08	Leucine-zipper of ternary complex factor MIP1
DUF547	PF04784	311 - 380	4.7e-17	Protein of unknown function, DUF547

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21060 AT1G21060 AT1G76620 AT1G76620
fragaria_vesca	FvH4_5g26610 FvH4_5g26610
malus_domestica	MD06G1001000.v1.1
prunus_persica	Prupe.5G001300_v2.0.a1 Prupe.5G001300_v2.0.a1 Prupe.5G001300_v2.0.a1 Prupe.5G001300_v2.0.a1 Prupe.5G001300_v2.0.a1
pyrus_communis	pycom06g00020
rosa_chinensis	RchiOBHm_Chr7g0217551
rosa_laevigata	RLG00000002462
rosa_multiflora	Rmu_co8121272.1_g000001 Rmu_co8214236.1_g000001 Rmu_sc0004631.1_g000001 Rmu_sc0006161.1_g000005
rosa_roxburghii	Rroxscaffold_3G00241880
rosa_rugosa	Rorug07G0169700 Rorug07G0169700 Rorug07G0169800
rosa_samantha	Rh7AG309700 Rh7BG300800 Rh7CG328900 Rh7DG309300
rosa_wichuraiana	Rw7G026270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	595
AclWI	GGATC	1 cut(s)	561
AcsI	RAATTY	5 cut(s)	4, 886, 1110, 1144, 1158
AcuI	CTGAAG	3 cut(s)	162, 630, 950
AfaI	GTAC	2 cut(s)	366, 1033
AgsI	TTSAA	9 cut(s)	38, 296, 726, 793, 835, 862, 1038, 1045, 1181
AjnI	CCWGG	1 cut(s)	114
AleI	CACNNNNGTG	2 cut(s)	408, 474
AluBI	AGCT	9 cut(s)	17, 214, 241, 290, 665, 683, 858, 952, 1098
AluI	AGCT	9 cut(s)	17, 214, 241, 290, 665, 683, 858, 952, 1098
Alw21I	GWGCWC	2 cut(s)	1100, 1120
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	1 cut(s)	561
Aor13HI	TCCGGA	1 cut(s)	595
ApeKI	GCWGC	5 cut(s)	543, 704, 869, 1049, 1127
ApoI	RAATTY	5 cut(s)	4, 886, 1110, 1144, 1158
AseI	ATTAAT	1 cut(s)	966
Asp700I	GAANNNNTTC	1 cut(s)	16
AspS9I	GGNCC	3 cut(s)	413, 508, 806
AsuC2I	CCSGG	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	997
AsuII	TTCGAA	2 cut(s)	904, 1169
AvaII	GGWCC	3 cut(s)	413, 508, 806
BanII	GRGCYC	1 cut(s)	1100
BarI	GAAGNNNNNNTAC	4 cut(s)	706, 738, 1037, 1069
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	2 cut(s)	1100, 1120
BbvI	GCAGC	5 cut(s)	555, 691, 856, 1061, 1139
BccI	CCATC	2 cut(s)	273, 429
BciT130I	CCWGG	1 cut(s)	116
BcnI	CCSGG	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	3 cut(s)	60, 483, 560
BfmI	CTRYAG	1 cut(s)	207
BisI	GCNGC	5 cut(s)	544, 705, 870, 1050, 1128
BlsI	GCNGC	5 cut(s)	545, 706, 871, 1051, 1129
BmcAI	AGTACT	1 cut(s)	1033
Bme1390I	CCNGG	2 cut(s)	116, 320
Bme18I	GGWCC	3 cut(s)	413, 508, 806
BmgT120I	GGNCC	3 cut(s)	413, 508, 806
BmiI	GGNNCC	3 cut(s)	415, 455, 509
BmrFI	CCNGG	2 cut(s)	116, 320
BmsI	GCATC	4 cut(s)	614, 636, 757, 978
BpiI	GAAGAC	1 cut(s)	195
BpmI	CTGGAG	1 cut(s)	236
Bpu14I	TTCGAA	2 cut(s)	904, 1169
BpuEI	CTTGAG	5 cut(s)	257, 263, 651, 694, 932
BpuMI	CCSGG	1 cut(s)	320
BsaAI	YACGTR	1 cut(s)	1206
BsaJI	CCNNGG	4 cut(s)	318, 547, 699, 981
BsaWI	WCCGGW	1 cut(s)	595
Bse1I	ACTGG	1 cut(s)	384
Bse3DI	GCAATG	2 cut(s)	754, 766
BseAI	TCCGGA	1 cut(s)	595
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	4 cut(s)	318, 547, 699, 981
BseGI	GGATG	2 cut(s)	305, 695
BseMI	GCAATG	2 cut(s)	754, 766
BseMII	CTCAG	2 cut(s)	140, 474
BseNI	ACTGG	1 cut(s)	384
BseRI	GAGGAG	2 cut(s)	233, 236
BseXI	GCAGC	5 cut(s)	555, 691, 856, 1061, 1139
Bsh1285I	CGRYCG	1 cut(s)	350
BsiEI	CGRYCG	1 cut(s)	350
BsiHKAI	GWGCWC	2 cut(s)	1100, 1120
BsiSI	CCGG	2 cut(s)	320, 596
BslFI	GGGAC	2 cut(s)	521, 1080
BsmAI	GTCTC	1 cut(s)	60
BsmFI	GGGAC	2 cut(s)	521, 1080
BsmI	GAATGC	1 cut(s)	995
Bsp119I	TTCGAA	2 cut(s)	904, 1169
Bsp1286I	GDGCHC	2 cut(s)	1100, 1120
Bsp13I	TCCGGA	1 cut(s)	595
Bsp1407I	TGTACA	1 cut(s)	364
Bsp143I	GATC	4 cut(s)	347, 463, 553, 778
BspCNI	CTCAG	2 cut(s)	141, 473
BspEI	TCCGGA	1 cut(s)	595
BspHI	TCATGA	2 cut(s)	424, 781
BspLI	GGNNCC	3 cut(s)	415, 455, 509
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	1 cut(s)	561
BspQI	GCTCTTC	1 cut(s)	7
BspT104I	TTCGAA	2 cut(s)	904, 1169
BsrDI	GCAATG	2 cut(s)	754, 766
BsrGI	TGTACA	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	384
BssECI	CCNNGG	4 cut(s)	318, 547, 699, 981
BssMI	GATC	4 cut(s)	347, 463, 553, 778
BssT1I	CCWWGG	3 cut(s)	547, 699, 981
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	93, 743
Bst6I	CTCTTC	4 cut(s)	7, 175, 637, 939
BstAPI	GCANNNNNTGC	1 cut(s)	1124
BstAUI	TGTACA	1 cut(s)	364
BstBAI	YACGTR	1 cut(s)	1206
BstBI	TTCGAA	2 cut(s)	904, 1169
BstC8I	GCNNGC	1 cut(s)	993
BstDEI	CTNAG	3 cut(s)	149, 460, 844
BstF5I	GGATG	2 cut(s)	305, 695
BstKTI	GATC	4 cut(s)	350, 466, 556, 781
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	4 cut(s)	347, 463, 553, 778
BstMCI	CGRYCG	1 cut(s)	350
BstMWI	GCNNNNNNNGC	5 cut(s)	543, 671, 680, 1001, 1124
BstNI	CCWGG	1 cut(s)	116
BstNSI	RCATGY	1 cut(s)	995
BstSCI	CCNGG	2 cut(s)	114, 318
BstSFI	CTRYAG	1 cut(s)	207
BstV1I	GCAGC	5 cut(s)	555, 691, 856, 1061, 1139
BstV2I	GAAGAC	1 cut(s)	195
BtsCI	GGATG	2 cut(s)	305, 695
BtsIMutI	CAGTG	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	993
CciI	TCATGA	2 cut(s)	424, 781
Cfr13I	GGNCC	3 cut(s)	413, 508, 806
Csp6I	GTAC	2 cut(s)	365, 1032
CviAII	CATG	6 cut(s)	425, 782, 992, 1124, 1149, 1175
CviQI	GTAC	2 cut(s)	365, 1032
DdeI	CTNAG	3 cut(s)	149, 460, 844
DpnI	GATC	4 cut(s)	349, 465, 555, 780
DpnII	GATC	4 cut(s)	347, 463, 553, 778
Eam1104I	CTCTTC	4 cut(s)	7, 175, 637, 939
EarI	CTCTTC	4 cut(s)	7, 175, 637, 939
Ecl136II	GAGCTC	1 cut(s)	1098
Eco130I	CCWWGG	3 cut(s)	547, 699, 981
Eco24I	GRGCYC	1 cut(s)	1100
Eco47I	GGWCC	3 cut(s)	413, 508, 806
Eco53kI	GAGCTC	1 cut(s)	1098
Eco57I	CTGAAG	3 cut(s)	162, 630, 950
EcoICRI	GAGCTC	1 cut(s)	1098
EcoRI	GAATTC	3 cut(s)	4, 1110, 1144
EcoRII	CCWGG	1 cut(s)	114
EcoT14I	CCWWGG	3 cut(s)	547, 699, 981
EcoT22I	ATGCAT	4 cut(s)	629, 993, 997, 1084
EcoT38I	GRGCYC	1 cut(s)	1100
ErhI	CCWWGG	3 cut(s)	547, 699, 981
FaeI	CATG	6 cut(s)	428, 785, 995, 1127, 1152, 1178
FalI	AAGNNNNNCTT	6 cut(s)	718, 750, 827, 859, 936, 968
FaqI	GGGAC	2 cut(s)	521, 1080
FatI	CATG	6 cut(s)	424, 781, 991, 1123, 1148, 1174
FauNDI	CATATG	2 cut(s)	1006, 1084
Fnu4HI	GCNGC	5 cut(s)	544, 705, 870, 1050, 1128
FokI	GGATG	2 cut(s)	312, 682
FriOI	GRGCYC	1 cut(s)	1100
Fsp4HI	GCNGC	5 cut(s)	544, 705, 870, 1050, 1128
FspBI	CTAG	3 cut(s)	60, 483, 560
GluI	GCNGC	5 cut(s)	544, 705, 870, 1050, 1128
GsuI	CTGGAG	1 cut(s)	236
HapII	CCGG	2 cut(s)	320, 596
Hin1II	CATG	6 cut(s)	428, 785, 995, 1127, 1152, 1178
HincII	GTYRAC	1 cut(s)	533
HindII	GTYRAC	1 cut(s)	533
HindIII	AAGCTT	1 cut(s)	950
HinfI	GANTC	5 cut(s)	134, 524, 730, 748, 1171
HpaII	CCGG	2 cut(s)	320, 596
HphI	GGTGA	1 cut(s)	997
Hpy166II	GTNNAC	3 cut(s)	413, 533, 752
Hpy188I	TCNGA	6 cut(s)	22, 139, 181, 463, 610, 930
Hpy188III	TCNNGA	6 cut(s)	9, 425, 596, 782, 911, 961
Hpy8I	GTNNAC	3 cut(s)	413, 533, 752
HpyAV	CCTTC	6 cut(s)	136, 427, 450, 779, 910, 1039
HpyCH4III	ACNGT	2 cut(s)	93, 743
HpyCH4IV	ACGT	2 cut(s)	379, 1205
HpyF10VI	GCNNNNNNNGC	5 cut(s)	543, 671, 680, 1001, 1124
HpyF3I	CTNAG	3 cut(s)	149, 460, 844
HpySE526I	ACGT	2 cut(s)	379, 1205
Hsp92II	CATG	6 cut(s)	428, 785, 995, 1127, 1152, 1178
Kpn2I	TCCGGA	1 cut(s)	595
Kzo9I	GATC	4 cut(s)	347, 463, 553, 778
LguI	GCTCTTC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	1103
Lsp1109I	GCAGC	5 cut(s)	555, 691, 856, 1061, 1139
LweI	GCATC	4 cut(s)	614, 636, 757, 978
MaeI	CTAG	3 cut(s)	60, 483, 560
MaeII	ACGT	2 cut(s)	379, 1205
MaeIII	GTNAC	2 cut(s)	737, 1152
MalI	GATC	4 cut(s)	349, 465, 555, 780
MboI	GATC	4 cut(s)	347, 463, 553, 778
MhlI	GDGCHC	2 cut(s)	1100, 1120
MluCI	AATT	8 cut(s)	4, 335, 862, 886, 1038, 1110, 1144, 1158
MlyI	GAGTC	2 cut(s)	128, 757
MmeI	TCCRAC	3 cut(s)	75, 215, 725
MnlI	CCTC	4 cut(s)	211, 214, 401, 718
Mph1103I	ATGCAT	4 cut(s)	629, 993, 997, 1084
MroI	TCCGGA	1 cut(s)	595
MroXI	GAANNNNTTC	1 cut(s)	16
MseI	TTAA	3 cut(s)	356, 588, 966
MslI	CAYNNNNRTG	6 cut(s)	408, 474, 561, 759, 818, 1020
MspI	CCGG	2 cut(s)	320, 596
MspR9I	CCNGG	2 cut(s)	116, 320
Mva1269I	GAATGC	1 cut(s)	995
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	5 cut(s)	543, 671, 680, 1001, 1124
NciI	CCSGG	1 cut(s)	320
NdeI	CATATG	2 cut(s)	1006, 1084
NdeII	GATC	4 cut(s)	347, 463, 553, 778
NlaIII	CATG	6 cut(s)	428, 785, 995, 1127, 1152, 1178
NlaIV	GGNNCC	3 cut(s)	415, 455, 509
NmuCI	GTSAC	2 cut(s)	737, 1152
NsiI	ATGCAT	4 cut(s)	629, 993, 997, 1084
NspI	RCATGY	1 cut(s)	995
NspV	TTCGAA	2 cut(s)	904, 1169
OliI	CACNNNNGTG	2 cut(s)	408, 474
PaeI	GCATGC	1 cut(s)	995
PagI	TCATGA	2 cut(s)	424, 781
PciSI	GCTCTTC	1 cut(s)	7
PctI	GAATGC	1 cut(s)	995
PdmI	GAANNNNTTC	1 cut(s)	16
PfeI	GAWTC	3 cut(s)	524, 730, 1171
PkrI	GCNGC	5 cut(s)	545, 706, 871, 1051, 1129
Ple19I	CGATCG	1 cut(s)	350
PleI	GAGTC	2 cut(s)	128, 756
PpsI	GAGTC	2 cut(s)	128, 756
Ppu21I	YACGTR	1 cut(s)	1206
PshBI	ATTAAT	1 cut(s)	966
Psp124BI	GAGCTC	1 cut(s)	1100
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	3 cut(s)	415, 455, 509
PspPI	GGNCC	3 cut(s)	413, 508, 806
PstI	CTGCAG	1 cut(s)	211
PvuI	CGATCG	1 cut(s)	350
RsaI	GTAC	2 cut(s)	366, 1033
RsaNI	GTAC	2 cut(s)	365, 1032
RseI	CAYNNNNRTG	6 cut(s)	408, 474, 561, 759, 818, 1020
SacI	GAGCTC	1 cut(s)	1100
SapI	GCTCTTC	1 cut(s)	7
SaqAI	TTAA	3 cut(s)	356, 588, 966
SatI	GCNGC	5 cut(s)	544, 705, 870, 1050, 1128
Sau3AI	GATC	4 cut(s)	347, 463, 553, 778
Sau96I	GGNCC	3 cut(s)	413, 508, 806
ScaI	AGTACT	1 cut(s)	1033
SchI	GAGTC	2 cut(s)	128, 757
ScrFI	CCNGG	2 cut(s)	116, 320
SduI	GDGCHC	2 cut(s)	1100, 1120
SfaNI	GCATC	4 cut(s)	614, 636, 757, 978
SfcI	CTRYAG	1 cut(s)	207
SfuI	TTCGAA	2 cut(s)	904, 1169
SinI	GGWCC	3 cut(s)	413, 508, 806
SmiMI	CAYNNNNRTG	6 cut(s)	408, 474, 561, 759, 818, 1020
SmlI	CTYRAG	5 cut(s)	236, 242, 666, 709, 911
SmoI	CTYRAG	5 cut(s)	236, 242, 666, 709, 911
SphI	GCATGC	1 cut(s)	995
Sse9I	AATT	8 cut(s)	4, 335, 862, 886, 1038, 1110, 1144, 1158
SspI	AATATT	1 cut(s)	970
SspMI	CTAG	3 cut(s)	60, 483, 560
SstI	GAGCTC	1 cut(s)	1100
StyD4I	CCNGG	2 cut(s)	114, 318
StyI	CCWWGG	3 cut(s)	547, 699, 981
TaaI	ACNGT	2 cut(s)	93, 743
TaiI	ACGT	2 cut(s)	382, 1208
TaqI	TCGA	3 cut(s)	904, 1114, 1169
TasI	AATT	8 cut(s)	4, 335, 862, 886, 1038, 1110, 1144, 1158
TatI	WGTACW	2 cut(s)	364, 1031
TfiI	GAWTC	3 cut(s)	524, 730, 1171
Tru1I	TTAA	3 cut(s)	356, 588, 966
Tru9I	TTAA	3 cut(s)	356, 588, 966
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	2 cut(s)	737, 1152
TseI	GCWGC	5 cut(s)	543, 704, 869, 1049, 1127
Tsp45I	GTSAC	2 cut(s)	737, 1152
TspDTI	ATGAA	7 cut(s)	17, 432, 684, 798, 950, 1063, 1137
TspRI	CASTG	1 cut(s)	153
VpaK11BI	GGWCC	3 cut(s)	413, 508, 806
VspI	ATTAAT	1 cut(s)	966
XapI	RAATTY	5 cut(s)	4, 886, 1110, 1144, 1158
XceI	RCATGY	1 cut(s)	995
XmnI	GAANNNNTTC	1 cut(s)	16
XspI	CTAG	3 cut(s)	60, 483, 560
ZrmI	AGTACT	1 cut(s)	1033
Zsp2I	ATGCAT	4 cut(s)	629, 993, 997, 1084

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.