pycom06g00020

Protein of unknown function, DUF547

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
26986 .. 30424
3439 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g00020.3

Sequence Viewer

Length: 1503 bp
ATGAAGAGCGCTACTTCTGACGAGATTAATGGACTCCTCTCCTTGTTTAACCCTGTTACTGCACAGTTGGATAGGATTTCGCGTGATCAGGCTTCCCTTTGCTGGGATTCTGACAAGGCGCTGGGTTCTAGTTCCATCAACTCTTTTGCTTCCCTTGCATCTCCAACACCAAAGTCTTCTACAGAGCTGAAGGAGGAGATTGACACACTTGAGCTTGAAATTATGCATTTAGAGCGTCATCTTCTTTCACTGTATCGAACAGCTTTTCAAGGATGCTCTTTGCCAGGTACTCCAGAAAGCCATTTACAATTTAAAACAGGACGTTCCAAATTGGAGCTGCAAATGCACAGAGATGAATTGACCTATCATGATCAAACTTCCCCCGCATATCGCCAGGCTAGCTCAGATAATCAAAGTAGTGCGACTGGCATAAAAGCACCATCTAAAAAGGACAGCAAAATTGCTAATTCTCGTCATCGCAGCCTAGCGGATCATCTTGGTGATTCTCTTAATGATAGTACCCTTAATACTCCGGATAGACTTTCTGAAGATATTGTGAGATGCATCTCTTCTATATACTGCAAACTCGCCAATCCCCAAAACCATGCACGCCTGTCAGCTTCTCCTACTTCATCCTTATCCTCCTCAAGTATATTTTCTTCTAAGAATCCTTGTGATAGTTGGAGTCCACATTGCAATGAGGAAGCTACAATGCATCCTCAAGGGTTGAAAGAAAAAAGTGGACCTTGTGCTACAATGACCAAAGTTTCAAAGATATGTTTAGATGAAGACAGCTTCAATTGTGCTGCTATGATGCTGCAAAATTTCAGGTCATTGGTTCGAAGTCTAGAGAAGGTTGACGTCCTGAAGATGAAACGTGAGCAGAAGCTTGTGTTCTGGATTAACATTCACAATGCCTTGGTGATGCATGCATACCTGGCATATGGAACTCATAATCGTGCGAAAAGTAGTTCAATTTTAAATGCAGCGTATAATATAGGTGGACATAGCATAAATGCGTATATCATTCAGACCTCCATCTTAGGAATCCGAGCACACCGCTCAGCACCGTGGCGACAAACATTGTTTCATTCAGGAAAGAAGTTGAAGGCGGGGAGCATTAGACATGTATACGCATTAGAATACCCTGAGCCTCTAGTCCATTTTGCTCTATGTTCAGGGGCATACTCTGACCCAGCGGTTCGAGCATACACAGCGAAGAGCGTATTTCAGGATCTGAAACTTGCTCAAACAGATTTCATTCGAGCTGGTGTCTCATGCAAGGAGACAAAAGTTTTCCTCCCTAAAATACTTGACTACTATGCAAAAGACATGTCGCTGGGTACTGTAGGCCTCTTGGAGGAAATAAATGATTGTCTTTCGGATACTCAAAAGAAAGCTATCAGAAGCTGCATGCAAGGAAAGCTTGACAATTACATACATTGGCTACCTCAGAGTTCAACCTTTCGGTACGTGGTCCATGAGGATGTAACCAATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

501

Amino Acids

55.6

Weight (kDa)

8.55

Isoelectric Point (pI)

50.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 864
AccBSI CCGCTC 1 cut(s) 1062
AccI GTMKAC 1 cut(s) 1131
AccII CGCG 1 cut(s) 82
AccIII TCCGGA 1 cut(s) 532
AciI CCGC 5 cut(s) 384, 488, 1060, 1112, 1199
AclWI GGATC 2 cut(s) 498, 1242
AcsI RAATTY 1 cut(s) 823
AcuI CTGAAG 3 cut(s) 209, 567, 887
AcyI GRCGYC 1 cut(s) 861
AfaI GTAC 4 cut(s) 289, 520, 1345, 1472
AfeI AGCGCT 1 cut(s) 10
AfiI CCNNNNNNNGG 3 cut(s) 102, 103, 1360
AflIII ACRYGT 2 cut(s) 1126, 1332
AgsI TTSAA 8 cut(s) 218, 269, 730, 771, 799, 975, 1108, 1461
AjnI CCWGG 3 cut(s) 283, 393, 936
Alw21I GWGCWC 1 cut(s) 1057
Alw26I GTCTC 2 cut(s) 1279, 1280
AlwI GGATC 2 cut(s) 498, 1242
AlwNI CAGNNNCTG 2 cut(s) 1237, 1410
Aor13HI TCCGGA 1 cut(s) 532
Aor51HI AGCGCT 1 cut(s) 10
AoxI GGCC 1 cut(s) 1351
ApeKI GCWGC 6 cut(s) 337, 480, 806, 817, 986, 1410
ApoI RAATTY 1 cut(s) 823
ArsI GACNNNNNNTTYG 2 cut(s) 1319, 1351
AseI ATTAAT 1 cut(s) 27
AspLEI GCGC 2 cut(s) 11, 121
AspS9I GGNCC 2 cut(s) 743, 1477
AsuHPI GGTGA 2 cut(s) 512, 934
AsuII TTCGAA 1 cut(s) 841
AsuNHI GCTAGC 1 cut(s) 398
AvaII GGWCC 2 cut(s) 743, 1477
BarI GAAGNNNNNNTAC 2 cut(s) 643, 675
BbsI GAAGAC 2 cut(s) 168, 795
Bbv12I GWGCWC 1 cut(s) 1057
BbvI GCAGC 6 cut(s) 324, 492, 793, 804, 998, 1397
BccI CCATC 3 cut(s) 143, 448, 1046
BciT130I CCWGG 3 cut(s) 285, 395, 938
BciVI GTATCC 1 cut(s) 1378
BclI TGATCA 2 cut(s) 85, 370
BcoDI GTCTC 2 cut(s) 1279, 1280
BfaI CTAG 5 cut(s) 129, 399, 485, 848, 1157
BfmI CTRYAG 2 cut(s) 180, 1347
BfoI RGCGCY 2 cut(s) 12, 122
BfuI GTATCC 1 cut(s) 1378
BisI GCNGC 6 cut(s) 338, 481, 807, 818, 987, 1411
BlpI GCTNAGC 1 cut(s) 1063
BlsI GCNGC 6 cut(s) 339, 482, 808, 819, 988, 1412
Bme1390I CCNGG 3 cut(s) 285, 395, 938
Bme18I GGWCC 2 cut(s) 743, 1477
BmgT120I GGNCC 2 cut(s) 743, 1477
BmrFI CCNGG 3 cut(s) 285, 395, 938
BmsI GCATC 7 cut(s) 167, 263, 551, 573, 724, 804, 915
BmtI GCTAGC 1 cut(s) 402
BpiI GAAGAC 2 cut(s) 168, 795
BpmI CTGGAG 1 cut(s) 276
Bpu10I CCTNAGC 1 cut(s) 1149
Bpu1102I GCTNAGC 1 cut(s) 1063
Bpu14I TTCGAA 1 cut(s) 841
BpuEI CTTGAG 3 cut(s) 230, 631, 705
BsaAI YACGTR 1 cut(s) 1474
BsaHI GRCGYC 1 cut(s) 861
BsaJI CCNNGG 2 cut(s) 918, 1070
BsaWI WCCGGW 1 cut(s) 532
Bsc4I CCNNNNNNNGG 3 cut(s) 102, 103, 1360
Bse1I ACTGG 1 cut(s) 430
Bse3DI GCAATG 2 cut(s) 691, 703
BseAI TCCGGA 1 cut(s) 532
BseBI CCWGG 3 cut(s) 285, 395, 938
BseDI CCNNGG 2 cut(s) 918, 1070
BseGI GGATG 4 cut(s) 278, 632, 715, 1492
BseLI CCNNNNNNNGG 3 cut(s) 102, 103, 1360
BseMI GCAATG 2 cut(s) 691, 703
BseMII CTCAG 4 cut(s) 417, 1077, 1140, 1466
BseNI ACTGG 1 cut(s) 430
BseRI GAGGAG 3 cut(s) 26, 209, 634
BseXI GCAGC 6 cut(s) 324, 492, 793, 804, 998, 1397
BseYI CCCAGC 4 cut(s) 102, 121, 1195, 1339
BsgI GTGCAG 1 cut(s) 45
Bsh1236I CGCG 1 cut(s) 82
BshFI GGCC 1 cut(s) 1353
BsiHKAI GWGCWC 1 cut(s) 1057
BsiSI CCGG 1 cut(s) 533
BslI CCNNNNNNNGG 3 cut(s) 102, 103, 1360
BsmAI GTCTC 2 cut(s) 1279, 1280
BsnI GGCC 1 cut(s) 1353
Bsp119I TTCGAA 1 cut(s) 841
Bsp1286I GDGCHC 1 cut(s) 1057
Bsp13I TCCGGA 1 cut(s) 532
Bsp143I GATC 4 cut(s) 85, 370, 490, 1234
Bsp1720I GCTNAGC 1 cut(s) 1063
BspACI CCGC 5 cut(s) 384, 488, 1060, 1112, 1199
BspANI GGCC 1 cut(s) 1353
BspCNI CTCAG 4 cut(s) 416, 1076, 1141, 1465
BspEI TCCGGA 1 cut(s) 532
BspFNI CGCG 1 cut(s) 82
BspHI TCATGA 1 cut(s) 367
BspOI GCTAGC 1 cut(s) 402
BspPI GGATC 2 cut(s) 498, 1242
BspQI GCTCTTC 1 cut(s) 1214
BspT104I TTCGAA 1 cut(s) 841
BsrBI CCGCTC 1 cut(s) 1062
BsrDI GCAATG 2 cut(s) 691, 703
BsrI ACTGG 1 cut(s) 430
BssECI CCNNGG 2 cut(s) 918, 1070
BssMI GATC 4 cut(s) 85, 370, 490, 1234
BssNAI GTATAC 1 cut(s) 1132
BssNI GRCGYC 1 cut(s) 861
BssT1I CCWWGG 1 cut(s) 918
Bst1107I GTATAC 1 cut(s) 1132
Bst2UI CCWGG 3 cut(s) 285, 395, 938
Bst4CI ACNGT 4 cut(s) 66, 252, 1071, 1348
Bst6I CTCTTC 2 cut(s) 574, 1214
BstACI GRCGYC 1 cut(s) 861
BstBAI YACGTR 1 cut(s) 1474
BstBI TTCGAA 1 cut(s) 841
BstC8I GCNNGC 4 cut(s) 400, 610, 930, 1415
BstDEI CTNAG 6 cut(s) 403, 663, 1042, 1063, 1149, 1452
BstDSI CCRYGG 1 cut(s) 1070
BstENI CCTNNNNNAGG 1 cut(s) 1358
BstF5I GGATG 4 cut(s) 278, 632, 715, 1492
BstFNI CGCG 1 cut(s) 82
BstH2I RGCGCY 2 cut(s) 12, 122
BstHHI GCGC 2 cut(s) 11, 121
BstKTI GATC 4 cut(s) 88, 373, 493, 1237
BstMAI GTCTC 2 cut(s) 1279, 1280
BstMBI GATC 4 cut(s) 85, 370, 490, 1234
BstMWI GCNNNNNNNGC 8 cut(s) 155, 232, 343, 399, 938, 1205, 1214, 1423
BstNI CCWGG 3 cut(s) 285, 395, 938
BstNSI RCATGY 4 cut(s) 932, 1130, 1336, 1417
BstSCI CCNGG 3 cut(s) 283, 393, 936
BstSFI CTRYAG 2 cut(s) 180, 1347
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 6 cut(s) 324, 492, 793, 804, 998, 1397
BstV2I GAAGAC 2 cut(s) 168, 795
BstX2I RGATCY 1 cut(s) 1234
BstYI RGATCY 1 cut(s) 1234
BstZ17I GTATAC 1 cut(s) 1132
BsuI GTATCC 1 cut(s) 1378
BsuRI GGCC 1 cut(s) 1353
BtgI CCRYGG 1 cut(s) 1070
BtgZI GCGATG 1 cut(s) 461
BtsCI GGATG 4 cut(s) 278, 632, 715, 1492
BtsIMutI CAGTG 1 cut(s) 248
Cac8I GCNNGC 4 cut(s) 400, 610, 930, 1415
CaiI CAGNNNCTG 2 cut(s) 1237, 1410
CciI TCATGA 1 cut(s) 367
CfoI GCGC 2 cut(s) 11, 121
Cfr13I GGNCC 2 cut(s) 743, 1477
CseI GACGC 1 cut(s) 224
Csp6I GTAC 4 cut(s) 288, 519, 1344, 1471
CviAII CATG 8 cut(s) 368, 605, 929, 1127, 1278, 1333, 1414, 1481
CviQI GTAC 4 cut(s) 288, 519, 1344, 1471
DdeI CTNAG 6 cut(s) 403, 663, 1042, 1063, 1149, 1452
DpnI GATC 4 cut(s) 87, 372, 492, 1236
DpnII GATC 4 cut(s) 85, 370, 490, 1234
DraI TTTAAA 2 cut(s) 313, 981
Eam1104I CTCTTC 2 cut(s) 574, 1214
EarI CTCTTC 2 cut(s) 574, 1214
Eco130I CCWWGG 1 cut(s) 918
Eco147I AGGCCT 1 cut(s) 1353
Eco47I GGWCC 2 cut(s) 743, 1477
Eco47III AGCGCT 1 cut(s) 10
Eco57I CTGAAG 3 cut(s) 209, 567, 887
EcoNI CCTNNNNNAGG 1 cut(s) 1358
EcoRII CCWGG 3 cut(s) 283, 393, 936
EcoT14I CCWWGG 1 cut(s) 918
EcoT22I ATGCAT 5 cut(s) 228, 566, 717, 930, 934
ErhI CCWWGG 1 cut(s) 918
FaeI CATG 8 cut(s) 371, 608, 932, 1130, 1281, 1336, 1417, 1484
FalI AAGNNNNNCTT 4 cut(s) 730, 762, 1410, 1442
FatI CATG 8 cut(s) 367, 604, 928, 1126, 1277, 1332, 1413, 1480
FauI CCCGC 2 cut(s) 391, 1105
FauNDI CATATG 1 cut(s) 943
FbaI TGATCA 2 cut(s) 85, 370
FblI GTMKAC 1 cut(s) 1131
Fnu4HI GCNGC 6 cut(s) 338, 481, 807, 818, 987, 1411
FokI GGATG 4 cut(s) 285, 619, 702, 1499
Fsp4HI GCNGC 6 cut(s) 338, 481, 807, 818, 987, 1411
FspBI CTAG 5 cut(s) 129, 399, 485, 848, 1157
GlaI GCGC 2 cut(s) 10, 120
GluI GCNGC 6 cut(s) 338, 481, 807, 818, 987, 1411
GsaI CCCAGC 4 cut(s) 106, 125, 1199, 1343
GsuI CTGGAG 1 cut(s) 276
HaeII RGCGCY 2 cut(s) 12, 122
HaeIII GGCC 1 cut(s) 1353
HapII CCGG 1 cut(s) 533
HgaI GACGC 1 cut(s) 224
HhaI GCGC 2 cut(s) 11, 121
Hin1I GRCGYC 1 cut(s) 861
Hin1II CATG 8 cut(s) 371, 608, 932, 1130, 1281, 1336, 1417, 1484
Hin6I GCGC 2 cut(s) 9, 119
HinP1I GCGC 2 cut(s) 9, 119
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HindIII AAGCTT 2 cut(s) 887, 1424
HinfI GANTC 6 cut(s) 33, 107, 503, 667, 685, 1047
HpaII CCGG 1 cut(s) 533
HphI GGTGA 2 cut(s) 512, 934
Hpy166II GTNNAC 5 cut(s) 689, 743, 859, 1004, 1132
Hpy188III TCNNGA 8 cut(s) 293, 368, 533, 848, 865, 898, 1095, 1232
Hpy8I GTNNAC 5 cut(s) 689, 743, 859, 1004, 1132
HpyAV CCTTC 3 cut(s) 184, 847, 1102
HpyCH4III ACNGT 4 cut(s) 66, 252, 1071, 1348
HpyCH4IV ACGT 4 cut(s) 322, 861, 877, 1473
HpyF10VI GCNNNNNNNGC 8 cut(s) 155, 232, 343, 399, 938, 1205, 1214, 1423
HpyF3I CTNAG 6 cut(s) 403, 663, 1042, 1063, 1149, 1452
HpySE526I ACGT 4 cut(s) 322, 861, 877, 1473
Hsp92I GRCGYC 1 cut(s) 861
Hsp92II CATG 8 cut(s) 371, 608, 932, 1130, 1281, 1336, 1417, 1484
HspAI GCGC 2 cut(s) 9, 119
Kpn2I TCCGGA 1 cut(s) 532
Ksp22I TGATCA 2 cut(s) 85, 370
Kzo9I GATC 4 cut(s) 85, 370, 490, 1234
LguI GCTCTTC 1 cut(s) 1214
LmnI GCTCC 2 cut(s) 334, 1116
Lsp1109I GCAGC 6 cut(s) 324, 492, 793, 804, 998, 1397
LweI GCATC 7 cut(s) 167, 263, 551, 573, 724, 804, 915
MaeI CTAG 5 cut(s) 129, 399, 485, 848, 1157
MaeII ACGT 4 cut(s) 322, 861, 877, 1473
MaeIII GTNAC 2 cut(s) 55, 1489
MalI GATC 4 cut(s) 87, 372, 492, 1236
MbiI CCGCTC 1 cut(s) 1062
MboI GATC 4 cut(s) 85, 370, 490, 1234
MboII GAAGA 9 cut(s) 16, 168, 233, 560, 561, 651, 800, 880, 1231
MfeI CAATTG 1 cut(s) 799
MflI RGATCY 1 cut(s) 1234
MhlI GDGCHC 1 cut(s) 1057
MlyI GAGTC 2 cut(s) 27, 694
MmeI TCCRAC 3 cut(s) 48, 188, 662
Mph1103I ATGCAT 5 cut(s) 228, 566, 717, 930, 934
MroI TCCGGA 1 cut(s) 532
MseI TTAA 7 cut(s) 27, 48, 312, 510, 525, 903, 980
MslI CAYNNNNRTG 5 cut(s) 351, 498, 696, 957, 1485
MspA1I CMGCKG 1 cut(s) 1199
MspI CCGG 1 cut(s) 533
MspR9I CCNGG 3 cut(s) 285, 395, 938
MunI CAATTG 1 cut(s) 799
MvaI CCWGG 3 cut(s) 285, 395, 938
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 8 cut(s) 155, 232, 343, 399, 938, 1205, 1214, 1423
NdeI CATATG 1 cut(s) 943
NdeII GATC 4 cut(s) 85, 370, 490, 1234
NheI GCTAGC 1 cut(s) 398
NlaIII CATG 8 cut(s) 371, 608, 932, 1130, 1281, 1336, 1417, 1484
NsiI ATGCAT 5 cut(s) 228, 566, 717, 930, 934
NspI RCATGY 4 cut(s) 932, 1130, 1336, 1417
NspV TTCGAA 1 cut(s) 841
PaeI GCATGC 2 cut(s) 932, 1417
PagI TCATGA 1 cut(s) 367
PceI AGGCCT 1 cut(s) 1353
PciI ACATGT 2 cut(s) 1126, 1332
PciSI GCTCTTC 1 cut(s) 1214
PfeI GAWTC 4 cut(s) 107, 503, 667, 1047
PkrI GCNGC 6 cut(s) 339, 482, 808, 819, 988, 1412
PleI GAGTC 2 cut(s) 27, 693
PpsI GAGTC 2 cut(s) 27, 693
Ppu21I YACGTR 1 cut(s) 1474
PscI ACATGT 2 cut(s) 1126, 1332
PshBI ATTAAT 1 cut(s) 27
Psp6I CCWGG 3 cut(s) 283, 393, 936
PspFI CCCAGC 4 cut(s) 102, 121, 1195, 1339
PspGI CCWGG 3 cut(s) 283, 393, 936
PspPI GGNCC 2 cut(s) 743, 1477
PstNI CAGNNNCTG 2 cut(s) 1237, 1410
PsuI RGATCY 1 cut(s) 1234
RsaI GTAC 4 cut(s) 289, 520, 1345, 1472
RsaNI GTAC 4 cut(s) 288, 519, 1344, 1471
RseI CAYNNNNRTG 5 cut(s) 351, 498, 696, 957, 1485
SapI GCTCTTC 1 cut(s) 1214
SaqAI TTAA 7 cut(s) 27, 48, 312, 510, 525, 903, 980
SatI GCNGC 6 cut(s) 338, 481, 807, 818, 987, 1411
Sau3AI GATC 4 cut(s) 85, 370, 490, 1234
Sau96I GGNCC 2 cut(s) 743, 1477
SchI GAGTC 2 cut(s) 27, 694
ScrFI CCNGG 3 cut(s) 285, 395, 938
SduI GDGCHC 1 cut(s) 1057
SfaNI GCATC 7 cut(s) 167, 263, 551, 573, 724, 804, 915
SfcI CTRYAG 2 cut(s) 180, 1347
SfuI TTCGAA 1 cut(s) 841
SinI GGWCC 2 cut(s) 743, 1477
SmiMI CAYNNNNRTG 5 cut(s) 351, 498, 696, 957, 1485
SmlI CTYRAG 3 cut(s) 209, 646, 720
SmoI CTYRAG 3 cut(s) 209, 646, 720
SphI GCATGC 2 cut(s) 932, 1417
SseBI AGGCCT 1 cut(s) 1353
SsiI CCGC 5 cut(s) 384, 488, 1060, 1112, 1199
SspMI CTAG 5 cut(s) 129, 399, 485, 848, 1157
StuI AGGCCT 1 cut(s) 1353
StyD4I CCNGG 3 cut(s) 283, 393, 936
StyI CCWWGG 1 cut(s) 918
TaaI ACNGT 4 cut(s) 66, 252, 1071, 1348
TaiI ACGT 4 cut(s) 325, 864, 880, 1476
TaqI TCGA 4 cut(s) 256, 841, 1204, 1264
TfiI GAWTC 4 cut(s) 107, 503, 667, 1047
Tru1I TTAA 7 cut(s) 27, 48, 312, 510, 525, 903, 980
Tru9I TTAA 7 cut(s) 27, 48, 312, 510, 525, 903, 980
TscAI CASTG 1 cut(s) 255
TseI GCWGC 6 cut(s) 337, 480, 806, 817, 986, 1410
TspDTI ATGAA 7 cut(s) 17, 369, 621, 801, 887, 1079, 1249
TspRI CASTG 1 cut(s) 255
VpaK11BI GGWCC 2 cut(s) 743, 1477
VspI ATTAAT 1 cut(s) 27
XagI CCTNNNNNAGG 1 cut(s) 1358
XapI RAATTY 1 cut(s) 823
XbaI TCTAGA 1 cut(s) 847
XceI RCATGY 4 cut(s) 932, 1130, 1336, 1417
XmiI GTMKAC 1 cut(s) 1131
XspI CTAG 5 cut(s) 129, 399, 485, 848, 1157
ZraI GACGTC 1 cut(s) 862
Zsp2I ATGCAT 5 cut(s) 228, 566, 717, 930, 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.