Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004631.1

Orthogroup ID

OG0005669

Physical Location & Seq

Genomic Coordinates Forward (+)

14 .. 2608

Gene Structure 2595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004631.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

atgcagtggctacaatcattgctgcattcaggaaagaagttcaagacagggagcttgaggcacatctacgctctagaataccctgagccactagtccactttgctctatgttctggggcttactctgacccagcggttcgagcatacaccgcaaagagtatattccaggatctgaaacttgctaaaagagaatttattcaagccagtgtctacacagataatgatacaaaggtttacctcccaaaaattcttgagtactttgcaaaggacatgtcattaagtatccgtggactcttggaagaaatagaggaatgtctctcagaaattcaaaagaaagctatcagcagctgtatgaaggggaagcttgaggacaagtctgtacattggcaacctcaaagcttaacatttcgtcgaggatgggatggatctacacatcgacttctatttcgaaaacttgattgggcatcgcgtaacttgtggccttctcacgcatgtcgggcttccctgctccagaccaaggcacatctaattgctgatggaagagctgtcgttactaaggttccgacagctatggtttctagacaggagaggaggcagtttgaggatgttctggaatcctctcccaagaagcttcatttgagtttggcggtgggcaagttgaatttggatgctgcaagtatgggtctagaaatggtggttgcgcctcaacttgttgctaagaagaggagaagacctagaggcagtaagaacaaggttgctgctccaaagcctgcgactatgaagaagcaagggtcgtccaagaagaaaaaagttgccgcgcaaaagaagaataagaaggctagggagcttgtttttagctttcttagtgaagatgggaactccaaccttaaggggaaggagattgttctggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1

Protein Analysis

304

Amino Acids

34.29

Weight (kDa)

10.01

Isoelectric Point (pI)

53.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21060 AT1G21060 AT1G76620 AT1G76620
fragaria_vesca	FvH4_5g26610 FvH4_5g26610
malus_domestica	MD06G1001000.v1.1
prunus_persica	Prupe.5G001300_v2.0.a1 Prupe.5G001300_v2.0.a1 Prupe.5G001300_v2.0.a1 Prupe.5G001300_v2.0.a1 Prupe.5G001300_v2.0.a1
pyrus_communis	pycom06g00020
rosa_chinensis	RchiOBHm_Chr7g0217551
rosa_laevigata	RLG00000002462
rosa_multiflora	Rmu_co8121272.1_g000001 Rmu_co8214236.1_g000001 Rmu_sc0004631.1_g000001 Rmu_sc0006161.1_g000005
rosa_roxburghii	Rroxscaffold_3G00241880
rosa_rugosa	Rorug07G0169700 Rorug07G0169700 Rorug07G0169800
rosa_samantha	Rh7AG309700 Rh7BG300800 Rh7CG328900 Rh7DG309300
rosa_wichuraiana	Rw7G026270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	2 cut(s)	469, 818
AciI	CCGC	4 cut(s)	134, 150, 647, 816
AclWI	GGATC	2 cut(s)	177, 433
AcsI	RAATTY	4 cut(s)	191, 246, 324, 661
AfaI	GTAC	2 cut(s)	257, 381
AfiI	CCNNNNNNNGG	1 cut(s)	517
AflII	CTTAAG	1 cut(s)	887
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	4 cut(s)	43, 200, 329, 661
AhlI	ACTAGT	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	165
AjuI	GAANNNNNNNTTGG	2 cut(s)	442, 474
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	2 cut(s)	177, 433
AlwNI	CAGNNNCTG	2 cut(s)	172, 348
AoxI	GGCC	1 cut(s)	479
ApeKI	GCWGC	4 cut(s)	22, 345, 671, 758
ApoI	RAATTY	4 cut(s)	191, 246, 324, 661
ArsI	GACNNNNNNTTYG	4 cut(s)	257, 289, 429, 461
Asp700I	GAANNNNTTC	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	703, 820
AsuII	TTCGAA	1 cut(s)	448
BaeI	ACNNNNGTAYC	2 cut(s)	216, 249
BbsI	GAAGAC	1 cut(s)	736
BbvI	GCAGC	4 cut(s)	9, 357, 658, 745
BccI	CCATC	4 cut(s)	411, 416, 530, 866
BciT130I	CCWGG	1 cut(s)	167
BciVI	GTATCC	1 cut(s)	293
BcoDI	GTCTC	1 cut(s)	320
BcuI	ACTAGT	1 cut(s)	91
BfaI	CTAG	6 cut(s)	74, 92, 579, 686, 735, 840
BfrI	CTTAAG	1 cut(s)	887
BfuI	GTATCC	1 cut(s)	293
BisI	GCNGC	5 cut(s)	23, 346, 672, 759, 816
BlsI	GCNGC	5 cut(s)	24, 347, 673, 760, 817
BmcAI	AGTACT	1 cut(s)	257
Bme1390I	CCNGG	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	561
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	2 cut(s)	473, 658
BpiI	GAAGAC	1 cut(s)	736
BpmI	CTGGAG	1 cut(s)	494
Bpu10I	CCTNAGC	1 cut(s)	84
Bpu14I	TTCGAA	1 cut(s)	448
BpuEI	CTTGAG	3 cut(s)	76, 272, 386
BsaJI	CCNNGG	2 cut(s)	286, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	517
Bse1I	ACTGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	286, 516
BseGI	GGATG	4 cut(s)	422, 427, 610, 673
BseLI	CCNNNNNNNGG	1 cut(s)	517
BseMI	GCAATG	1 cut(s)	17
BseMII	CTCAG	2 cut(s)	75, 333
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	2 cut(s)	604, 739
BseXI	GCAGC	4 cut(s)	9, 357, 658, 745
BseYI	CCCAGC	1 cut(s)	130
Bsh1236I	CGCG	2 cut(s)	469, 818
BshFI	GGCC	1 cut(s)	481
BslI	CCNNNNNNNGG	1 cut(s)	517
BsmAI	GTCTC	1 cut(s)	320
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	481
Bsp119I	TTCGAA	1 cut(s)	448
Bsp1407I	TGTACA	1 cut(s)	379
Bsp143I	GATC	2 cut(s)	169, 425
BspACI	CCGC	4 cut(s)	134, 150, 647, 816
BspANI	GGCC	1 cut(s)	481
BspCNI	CTCAG	2 cut(s)	76, 332
BspFNI	CGCG	2 cut(s)	469, 818
BspLI	GGNNCC	1 cut(s)	561
BspPI	GGATC	2 cut(s)	177, 433
BspQI	GCTCTTC	1 cut(s)	535
BspT104I	TTCGAA	1 cut(s)	448
BspTI	CTTAAG	1 cut(s)	887
BsrDI	GCAATG	1 cut(s)	17
BsrGI	TGTACA	1 cut(s)	379
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	2 cut(s)	286, 516
BssMI	GATC	2 cut(s)	169, 425
BssT1I	CCWWGG	1 cut(s)	516
Bst2UI	CCWGG	1 cut(s)	167
Bst6I	CTCTTC	2 cut(s)	535, 716
BstAFI	CTTAAG	1 cut(s)	887
BstAUI	TGTACA	1 cut(s)	379
BstBI	TTCGAA	1 cut(s)	448
BstC8I	GCNNGC	1 cut(s)	771
BstDEI	CTNAG	6 cut(s)	84, 319, 555, 717, 863, 912
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	4 cut(s)	422, 427, 610, 673
BstFNI	CGCG	2 cut(s)	469, 818
BstHHI	GCGC	2 cut(s)	703, 820
BstKTI	GATC	2 cut(s)	172, 428
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	2 cut(s)	169, 425
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 149, 497
BstNI	CCWGG	1 cut(s)	167
BstNSI	RCATGY	2 cut(s)	274, 495
BstSCI	CCNGG	1 cut(s)	165
BstUI	CGCG	2 cut(s)	469, 818
BstV1I	GCAGC	4 cut(s)	9, 357, 658, 745
BstV2I	GAAGAC	1 cut(s)	736
BstX2I	RGATCY	2 cut(s)	169, 425
BstYI	RGATCY	2 cut(s)	169, 425
BsuI	GTATCC	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	481
BtgI	CCRYGG	1 cut(s)	286
BtgZI	GCGATG	1 cut(s)	450
BtsCI	GGATG	4 cut(s)	422, 427, 610, 673
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	2 cut(s)	11, 211
Cac8I	GCNNGC	1 cut(s)	771
CaiI	CAGNNNCTG	2 cut(s)	172, 348
CfoI	GCGC	2 cut(s)	703, 820
Csp6I	GTAC	2 cut(s)	256, 380
CviAII	CATG	2 cut(s)	271, 492
CviQI	GTAC	2 cut(s)	256, 380
DdeI	CTNAG	6 cut(s)	84, 319, 555, 717, 863, 912
DpnI	GATC	2 cut(s)	171, 427
DpnII	GATC	2 cut(s)	169, 425
Eam1104I	CTCTTC	2 cut(s)	535, 716
EarI	CTCTTC	2 cut(s)	535, 716
Eco130I	CCWWGG	1 cut(s)	516
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	516
ErhI	CCWWGG	1 cut(s)	516
FaeI	CATG	2 cut(s)	274, 495
FaiI	YATR	9 cut(s)	109, 145, 161, 272, 353, 493, 572, 680, 779
FatI	CATG	2 cut(s)	270, 491
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	5 cut(s)	23, 346, 672, 759, 816
FokI	GGATG	4 cut(s)	429, 434, 617, 680
Fsp4HI	GCNGC	5 cut(s)	23, 346, 672, 759, 816
FspBI	CTAG	6 cut(s)	74, 92, 579, 686, 735, 840
GlaI	GCGC	2 cut(s)	702, 819
GluI	GCNGC	5 cut(s)	23, 346, 672, 759, 816
GsaI	CCCAGC	1 cut(s)	134
GsuI	CTGGAG	1 cut(s)	494
HaeIII	GGCC	1 cut(s)	481
HhaI	GCGC	2 cut(s)	703, 820
Hin1II	CATG	2 cut(s)	274, 495
Hin6I	GCGC	2 cut(s)	701, 818
HinP1I	GCGC	2 cut(s)	701, 818
HindIII	AAGCTT	3 cut(s)	362, 397, 629
HinfI	GANTC	2 cut(s)	291, 614
Hpy166II	GTNNAC	4 cut(s)	97, 211, 235, 290
Hpy188I	TCNGA	4 cut(s)	127, 174, 322, 564
Hpy188III	TCNNGA	8 cut(s)	30, 43, 74, 251, 511, 579, 611, 686
Hpy8I	GTNNAC	4 cut(s)	97, 211, 235, 290
Hpy99I	CGWCG	1 cut(s)	414
HpyAV	CCTTC	4 cut(s)	349, 492, 829, 889
HpyCH4V	TGCA	4 cut(s)	4, 25, 263, 674
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 149, 497
HpyF3I	CTNAG	6 cut(s)	84, 319, 555, 717, 863, 912
Hsp92II	CATG	2 cut(s)	274, 495
HspAI	GCGC	2 cut(s)	701, 818
Kzo9I	GATC	2 cut(s)	169, 425
LguI	GCTCTTC	1 cut(s)	535
LmnI	GCTCC	4 cut(s)	51, 513, 766, 844
Lsp1109I	GCAGC	4 cut(s)	9, 357, 658, 745
LweI	GCATC	2 cut(s)	473, 658
MaeI	CTAG	6 cut(s)	74, 92, 579, 686, 735, 840
MaeIII	GTNAC	2 cut(s)	470, 550
MalI	GATC	2 cut(s)	171, 427
MboI	GATC	2 cut(s)	169, 425
MboII	GAAGA	8 cut(s)	311, 552, 733, 741, 793, 814, 838, 881
MflI	RGATCY	2 cut(s)	169, 425
MluCI	AATT	5 cut(s)	191, 246, 324, 528, 661
MlyI	GAGTC	1 cut(s)	285
MmeI	TCCRAC	2 cut(s)	587, 906
MroXI	GAANNNNTTC	1 cut(s)	195
MseI	TTAA	3 cut(s)	278, 401, 888
MspA1I	CMGCKG	2 cut(s)	134, 348
MspCI	CTTAAG	1 cut(s)	887
MspR9I	CCNGG	1 cut(s)	167
Mva1269I	GAATGC	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	167
MvnI	CGCG	2 cut(s)	469, 818
MwoI	GCNNNNNNNGC	3 cut(s)	140, 149, 497
NdeII	GATC	2 cut(s)	169, 425
NlaIII	CATG	2 cut(s)	274, 495
NlaIV	GGNNCC	1 cut(s)	561
NspI	RCATGY	2 cut(s)	274, 495
NspV	TTCGAA	1 cut(s)	448
PciI	ACATGT	1 cut(s)	270
PciSI	GCTCTTC	1 cut(s)	535
PctI	GAATGC	1 cut(s)	25
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	614
PfoI	TCCNGGA	1 cut(s)	165
PkrI	GCNGC	5 cut(s)	24, 347, 673, 760, 817
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
PscI	ACATGT	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	165
PspFI	CCCAGC	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	561
PstNI	CAGNNNCTG	2 cut(s)	172, 348
PsuI	RGATCY	2 cut(s)	169, 425
PvuII	CAGCTG	1 cut(s)	348
RsaI	GTAC	2 cut(s)	257, 381
RsaNI	GTAC	2 cut(s)	256, 380
SapI	GCTCTTC	1 cut(s)	535
SaqAI	TTAA	3 cut(s)	278, 401, 888
SatI	GCNGC	5 cut(s)	23, 346, 672, 759, 816
Sau3AI	GATC	2 cut(s)	169, 425
ScaI	AGTACT	1 cut(s)	257
SchI	GAGTC	1 cut(s)	285
ScrFI	CCNGG	1 cut(s)	167
SfaNI	GCATC	2 cut(s)	473, 658
SfuI	TTCGAA	1 cut(s)	448
SmlI	CTYRAG	4 cut(s)	55, 251, 365, 887
SmoI	CTYRAG	4 cut(s)	55, 251, 365, 887
SpeI	ACTAGT	1 cut(s)	91
Sse9I	AATT	5 cut(s)	191, 246, 324, 528, 661
SsiI	CCGC	4 cut(s)	134, 150, 647, 816
SspMI	CTAG	6 cut(s)	74, 92, 579, 686, 735, 840
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	516
TaqI	TCGA	4 cut(s)	139, 412, 436, 448
TasI	AATT	5 cut(s)	191, 246, 324, 528, 661
TatI	WGTACW	2 cut(s)	255, 379
TauI	GCSGC	1 cut(s)	818
TfiI	GAWTC	1 cut(s)	614
Tru1I	TTAA	3 cut(s)	278, 401, 888
Tru9I	TTAA	3 cut(s)	278, 401, 888
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	4 cut(s)	22, 345, 671, 758
TspDTI	ATGAA	3 cut(s)	368, 623, 794
TspGWI	ACGGA	1 cut(s)	275
TspRI	CASTG	1 cut(s)	211
Vha464I	CTTAAG	1 cut(s)	887
XapI	RAATTY	4 cut(s)	191, 246, 324, 661
XbaI	TCTAGA	3 cut(s)	73, 578, 685
XceI	RCATGY	2 cut(s)	274, 495
XmiI	GTMKAC	1 cut(s)	210
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	6 cut(s)	74, 92, 579, 686, 735, 840
ZrmI	AGTACT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.