MD06G1024600.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
3000727 .. 3008200
7474 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1024600.v1.1.491

Sequence Viewer

Length: 2100 bp
ATGAACCAACTGGACGACGACGACGATTGGGACTTAATTTTCACTGAACAAGCCGTACAAGTCGCCCAAGTACAAGAGCGTGCTTACTCTACTCAGCAGCAGCAGCAGCACCCCCCGCCGCCGCACCACCACCACACTCCTCAGCATTCTTTCTCGGAACCATCACAATATCACCATCACCAACAAGAACCGCCGCCCCCGCCTTCTTACTCCAATCCCGTTAGGCCCATTTCCTACTCCCCTCCGCGAGAGCTCACTCAGAGGACCACCACCACCACCACCAATGCACTTGCAATTTCCCTTTCTCCTTCGCCTCCTTCTTCCGCATTGCCTCCCTCTGCTAGCCGCCCTGAACTTGACAGAGAAAAAGAACTCGAAATCGACCGCTTAAAGGAAGAACTGGGACGTGTCTCAAAGCAGCTTTTGCACTTGGAACAAGAATGCTTTGAACTAAGGAAGGAAAAAGACAAACATCATAAATTTGTAAGTTCAATGACTGAAAAGAAAGAAGCAGCTGCTAGGAACTCTGATAGTACAAATTTGTCCGGTGGCATTAAGGAATCTGGAGATGTCCTAGTCAATCATAAGGATTCTCGACAATTTCAAAATGCATTATGTTTAAGTGGTCAGCCTGGCTCTCGGATTGATATTGGTGTGTCAACCTCTAAAGCTACACGTGTTCAAACTGATGAAACTAGTGCTTCTGCCCGACAAAACCCAAATGATGACCTCTCAAAGAAATTACTATCCATCTGGGGCTCTTCAAATGATTCAAATGAACAAGAGTTAGGAAGAAATGTAATTTCGAATTTGCTTATGGATTGCCAAACAGATTTCCTGTTCCTTTTTGGCTGCATTGGCATTAATAGAATGGACAAGCTGGGAGATGATAGCTCTTCTATTGCAGCTTCGCAGTACCACTTACACATGTCTCATACTCCAGAAGCAGCAAAAGTTTCTCATCTTTATTCTGTCTTGACCAAGGCGAAAAATGGAATGTTAAAGTTGGAGTCCTTGTTTCAACCATTACTCAACCTCTGTAGTCTTGAAAATGTTATCATTGTTCAGGCATCTCTACATATACTGCTTGTGTTTTTGAAGCACCTGGTAAGGCTGGAAAGGCATTTCGAGAGAAGGGTCAATGTTATGGTCGAGGGACTTGGAATGAAATATTCTTATGCCGAAACTCAAAGCAAGAATGGAGTTTGGAATAATGGCATTGCAACTTGGTTTTCTAATATAGACTGGATTTCTCTCTTTGAGGTGATCCTACAAACTACCATGAAGAATACAAACCAAGGTGTAAGGCTAGAAGCAGTCTCTGTTATGAATATGATTATAATGAGAAGTAATGCCTTTGTGGAGAGAGAAAAGTTTGGCCAAACATTGGTGTTTGAAATTCTTTCGCAGTTGCTTGCAAAGGAAGCTGGTTTTGAGGCCCGAAAACAAGCTGTGCAACTTCTATATATGCTACTTAATTGTCCTAAAATACTGGTCAAGTTCTGTTCTGATTATAAAGAGGGAAAAGCTGCCCTTGCTATGGATGATAATGTAGGCGATGCATCAGGTTACCAAAAATGTAGCATGATCCTTCAAGGATTGGCAGATTGTATAGCTTGCTGTGGGAACAGTTTAGAGGAACTGAAACTTCGCAGAATTGCTGTTCTTTTACTGGCTTTCCTAGCCTCGTCTGGAACATCTGGCTTCGAAATACTTGTGAGTCACAAGCTCTTTCGAGATGCAAACTTTCTGATGTTGATTTTACAAGTTTTGGCATCGGAGGTAGATACAGAACCAGCAGTTAATGCTGATCAAGCACAGAATTTCAAAGAGAGGACCTTGCTGTTGAGGGAGGCTCTTATACTACTTAACAGGCTGGTTTCAAACCCATCATATTCTGCCACTGTCTTGGGTTTATTAACAAACAGCAGAGACATGGCCAGCTTGACTGTTGATGTTGCAAACCAATTGTCCCGAAAAGACCAAATATGTGAGAAGTTTGATGGCATGACAAGGCAGATGCGGGAGTCTGAAATTGTAGACTTAGCTCGAGCATTTAAGAAAAGGGTGTTCATATATTTAGGAGATAACATACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

700

Amino Acids

78.46

Weight (kDa)

6.19

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1340, 1515
AccB7I CCANNNNNTGG 1 cut(s) 1387
AccI GTMKAC 1 cut(s) 2040
AccII CGCG 1 cut(s) 247
AclWI GGATC 2 cut(s) 1261, 1582
AcoI YGGCCR 2 cut(s) 1378, 1938
AcsI RAATTY 5 cut(s) 479, 538, 808, 1398, 1822
AcvI CACGTG 1 cut(s) 677
AfaI GTAC 4 cut(s) 57, 72, 535, 917
AfiI CCNNNNNNNGG 3 cut(s) 391, 1387, 1540
AflIII ACRYGT 4 cut(s) 406, 674, 676, 927
AhlI ACTAGT 1 cut(s) 695
AjiI CACGTC 1 cut(s) 407
AjnI CCWGG 2 cut(s) 631, 1104
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 4 cut(s) 415, 936, 1324, 1926
AlwI GGATC 2 cut(s) 1261, 1582
AlwNI CAGNNNCTG 1 cut(s) 1322
Ama87I CYCGRG 1 cut(s) 2049
AoxI GGCC 4 cut(s) 224, 1378, 1437, 1938
ApoI RAATTY 5 cut(s) 479, 538, 808, 1398, 1822
ArsI GACNNNNNNTTYG 2 cut(s) 1955, 1987
AseI ATTAAT 1 cut(s) 864
AspS9I GGNCC 4 cut(s) 225, 264, 1438, 1836
AsuHPI GGTGA 3 cut(s) 164, 170, 1276
AsuII TTCGAA 2 cut(s) 806, 1707
AsuNHI GCTAGC 1 cut(s) 341
AvaI CYCGRG 1 cut(s) 2049
AvaII GGWCC 2 cut(s) 264, 1836
BalI TGGCCA 2 cut(s) 1380, 1940
BanII GRGCYC 2 cut(s) 255, 761
BbrPI CACGTG 1 cut(s) 677
Bbv12I GWGCWC 1 cut(s) 255
BbvCI CCTCAGC 1 cut(s) 141
BccI CCATC 5 cut(s) 169, 183, 758, 1897, 1997
BceAI ACGGC 1 cut(s) 38
BciT130I CCWGG 2 cut(s) 633, 1106
BclI TGATCA 1 cut(s) 1810
BcoDI GTCTC 4 cut(s) 415, 936, 1324, 1926
BcuI ACTAGT 1 cut(s) 695
BfaI CTAG 6 cut(s) 342, 519, 575, 696, 1310, 1682
BfmI CTRYAG 1 cut(s) 1039
Bme1390I CCNGG 2 cut(s) 633, 1106
Bme18I GGWCC 2 cut(s) 264, 1836
BmeT110I CYCGRG 1 cut(s) 2049
BmgBI CACGTC 1 cut(s) 407
BmgT120I GGNCC 4 cut(s) 225, 264, 1438, 1836
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 2 cut(s) 633, 1106
BmrI ACTGGG 1 cut(s) 410
BmsI GCATC 6 cut(s) 1079, 1549, 1571, 1729, 1784, 2010
BmtI GCTAGC 1 cut(s) 345
BmuI ACTGGG 1 cut(s) 410
BplI GAGNNNNNCTC 2 cut(s) 1840, 1872
BpmI CTGGAG 2 cut(s) 585, 924
Bpu10I CCTNAGC 1 cut(s) 141
Bpu14I TTCGAA 2 cut(s) 806, 1707
BsaAI YACGTR 1 cut(s) 677
BsaJI CCNNGG 2 cut(s) 981, 1297
BsaWI WCCGGW 1 cut(s) 545
BsaXI ACNNNNNCTCC 2 cut(s) 1001, 1031
Bsc4I CCNNNNNNNGG 3 cut(s) 391, 1387, 1540
Bse1I ACTGG 5 cut(s) 15, 405, 1250, 1497, 1677
Bse3DI GCAATG 2 cut(s) 326, 1218
BseBI CCWGG 2 cut(s) 633, 1106
BseDI CCNNGG 2 cut(s) 981, 1297
BseGI GGATG 1 cut(s) 1549
BseLI CCNNNNNNNGG 3 cut(s) 391, 1387, 1540
BseMI GCAATG 2 cut(s) 326, 1218
BseMII CTCAG 3 cut(s) 107, 155, 272
BseNI ACTGG 5 cut(s) 15, 405, 1250, 1497, 1677
BseRI GAGGAG 1 cut(s) 129
BseYI CCCAGC 1 cut(s) 880
Bsh1236I CGCG 1 cut(s) 247
Bsh1285I CGRYCG 1 cut(s) 385
BshFI GGCC 4 cut(s) 226, 1380, 1439, 1940
BsiEI CGRYCG 1 cut(s) 385
BsiHKAI GWGCWC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 2049
BsiSI CCGG 1 cut(s) 546
BslFI GGGAC 4 cut(s) 44, 417, 1170, 1957
BslI CCNNNNNNNGG 3 cut(s) 391, 1387, 1540
BsmAI GTCTC 4 cut(s) 415, 936, 1324, 1926
BsmFI GGGAC 4 cut(s) 44, 417, 1170, 1957
BsmI GAATGC 2 cut(s) 145, 446
BsnI GGCC 4 cut(s) 226, 1380, 1439, 1940
BsoBI CYCGRG 1 cut(s) 2049
Bsp119I TTCGAA 2 cut(s) 806, 1707
Bsp1286I GDGCHC 2 cut(s) 255, 761
Bsp143I GATC 3 cut(s) 1266, 1587, 1810
BspANI GGCC 4 cut(s) 226, 1380, 1439, 1940
BspCNI CTCAG 3 cut(s) 106, 154, 271
BspFNI CGCG 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 159
BspOI GCTAGC 1 cut(s) 345
BspPI GGATC 2 cut(s) 1261, 1582
BspQI GCTCTTC 2 cut(s) 766, 901
BspT104I TTCGAA 2 cut(s) 806, 1707
BsrDI GCAATG 2 cut(s) 326, 1218
BsrI ACTGG 5 cut(s) 15, 405, 1250, 1497, 1677
BssECI CCNNGG 2 cut(s) 981, 1297
BssMI GATC 3 cut(s) 1266, 1587, 1810
BssT1I CCWWGG 2 cut(s) 981, 1297
Bst2UI CCWGG 2 cut(s) 633, 1106
Bst4CI ACNGT 4 cut(s) 1631, 1906, 1951, 2097
Bst6I CTCTTC 2 cut(s) 766, 901
BstAPI GCANNNNNTGC 2 cut(s) 424, 1805
BstBAI YACGTR 1 cut(s) 677
BstBI TTCGAA 2 cut(s) 806, 1707
BstC8I GCNNGC 5 cut(s) 81, 343, 1416, 1618, 1942
BstDEI CTNAG 5 cut(s) 93, 141, 258, 452, 2044
BstEII GGTNACC 1 cut(s) 1568
BstF5I GGATG 1 cut(s) 1549
BstFNI CGCG 1 cut(s) 247
BstKTI GATC 3 cut(s) 1269, 1590, 1813
BstMAI GTCTC 4 cut(s) 415, 936, 1324, 1926
BstMBI GATC 3 cut(s) 1266, 1587, 1810
BstMCI CGRYCG 1 cut(s) 385
BstNI CCWGG 2 cut(s) 633, 1106
BstNSI RCATGY 1 cut(s) 931
BstPI GGTNACC 1 cut(s) 1568
BstSCI CCNGG 2 cut(s) 631, 1104
BstSFI CTRYAG 1 cut(s) 1039
BstUI CGCG 1 cut(s) 247
BstXI CCANNNNNNTGG 1 cut(s) 1909
BsuRI GGCC 4 cut(s) 226, 1380, 1439, 1940
BtgZI GCGATG 1 cut(s) 1572
BtrI CACGTC 1 cut(s) 407
BtsCI GGATG 1 cut(s) 1549
BtsIMutI CAGTG 2 cut(s) 42, 1902
Cac8I GCNNGC 5 cut(s) 81, 343, 1416, 1618, 1942
CaiI CAGNNNCTG 1 cut(s) 1322
Cfr13I GGNCC 4 cut(s) 225, 264, 1438, 1836
CsiI ACCWGGT 1 cut(s) 1104
Csp6I GTAC 4 cut(s) 56, 71, 534, 916
CviAII CATG 5 cut(s) 928, 1282, 1585, 1936, 2008
CviQI GTAC 4 cut(s) 56, 71, 534, 916
DdeI CTNAG 5 cut(s) 93, 141, 258, 452, 2044
DpnI GATC 3 cut(s) 1268, 1589, 1812
DpnII GATC 3 cut(s) 1266, 1587, 1810
EaeI YGGCCR 2 cut(s) 1378, 1938
Eam1104I CTCTTC 2 cut(s) 766, 901
EarI CTCTTC 2 cut(s) 766, 901
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 2 cut(s) 981, 1297
Eco24I GRGCYC 2 cut(s) 255, 761
Eco47I GGWCC 2 cut(s) 264, 1836
Eco53kI GAGCTC 1 cut(s) 253
Eco72I CACGTG 1 cut(s) 677
Eco88I CYCGRG 1 cut(s) 2049
Eco91I GGTNACC 1 cut(s) 1568
EcoICRI GAGCTC 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 1836
EcoO65I GGTNACC 1 cut(s) 1568
EcoRII CCWGG 2 cut(s) 631, 1104
EcoT14I CCWWGG 2 cut(s) 981, 1297
EcoT22I ATGCAT 2 cut(s) 613, 1564
EcoT38I GRGCYC 2 cut(s) 255, 761
ErhI CCWWGG 2 cut(s) 981, 1297
FaeI CATG 5 cut(s) 931, 1285, 1588, 1939, 2011
FalI AAGNNNNNCTT 2 cut(s) 1518, 1550
FaqI GGGAC 4 cut(s) 44, 417, 1170, 1957
FatI CATG 5 cut(s) 927, 1281, 1584, 1935, 2007
FauI CCCGC 3 cut(s) 123, 207, 2016
FbaI TGATCA 1 cut(s) 1810
FblI GTMKAC 1 cut(s) 2040
FokI GGATG 1 cut(s) 1556
FriOI GRGCYC 2 cut(s) 255, 761
FspBI CTAG 6 cut(s) 342, 519, 575, 696, 1310, 1682
GsaI CCCAGC 1 cut(s) 884
GsuI CTGGAG 2 cut(s) 585, 924
HaeIII GGCC 4 cut(s) 226, 1380, 1439, 1940
HapII CCGG 1 cut(s) 546
Hin1II CATG 5 cut(s) 931, 1285, 1588, 1939, 2011
HincII GTYRAC 1 cut(s) 660
HindII GTYRAC 1 cut(s) 660
HinfI GANTC 6 cut(s) 560, 590, 770, 1010, 1720, 2027
HpaII CCGG 1 cut(s) 546
HphI GGTGA 3 cut(s) 164, 170, 1276
Hpy166II GTNNAC 2 cut(s) 660, 2041
Hpy188I TCNGA 8 cut(s) 157, 261, 529, 642, 1510, 1752, 1780, 2032
Hpy188III TCNNGA 9 cut(s) 564, 594, 941, 976, 1046, 1129, 1692, 1736, 1974
Hpy8I GTNNAC 2 cut(s) 660, 2041
Hpy99I CGWCG 3 cut(s) 20, 23, 26
HpyAV CCTTC 6 cut(s) 213, 318, 327, 451, 1128, 1601
HpyCH4III ACNGT 4 cut(s) 1631, 1906, 1951, 2097
HpyCH4IV ACGT 2 cut(s) 406, 676
HpyF3I CTNAG 5 cut(s) 93, 141, 258, 452, 2044
HpySE526I ACGT 2 cut(s) 406, 676
Hsp92II CATG 5 cut(s) 931, 1285, 1588, 1939, 2011
Ksp22I TGATCA 1 cut(s) 1810
Kzo9I GATC 3 cut(s) 1266, 1587, 1810
LguI GCTCTTC 2 cut(s) 766, 901
LweI GCATC 6 cut(s) 1079, 1549, 1571, 1729, 1784, 2010
MabI ACCWGGT 1 cut(s) 1104
MaeI CTAG 6 cut(s) 342, 519, 575, 696, 1310, 1682
MaeII ACGT 2 cut(s) 406, 676
MaeIII GTNAC 2 cut(s) 1568, 1721
MalI GATC 3 cut(s) 1268, 1589, 1812
MboI GATC 3 cut(s) 1266, 1587, 1810
MboII GAAGA 6 cut(s) 312, 407, 753, 804, 888, 1297
MfeI CAATTG 1 cut(s) 1967
MhlI GDGCHC 2 cut(s) 255, 761
MlsI TGGCCA 2 cut(s) 1380, 1940
MluNI TGGCCA 2 cut(s) 1380, 1940
MlyI GAGTC 3 cut(s) 1019, 1729, 2036
MmeI TCCRAC 1 cut(s) 987
Mox20I TGGCCA 2 cut(s) 1380, 1940
Mph1103I ATGCAT 2 cut(s) 613, 1564
MscI TGGCCA 2 cut(s) 1380, 1940
Msp20I TGGCCA 2 cut(s) 1380, 1940
MspA1I CMGCKG 1 cut(s) 515
MspI CCGG 1 cut(s) 546
MspR9I CCNGG 2 cut(s) 633, 1106
MunI CAATTG 1 cut(s) 1967
Mva1269I GAATGC 2 cut(s) 145, 446
MvaI CCWGG 2 cut(s) 633, 1106
MvnI CGCG 1 cut(s) 247
NdeII GATC 3 cut(s) 1266, 1587, 1810
NheI GCTAGC 1 cut(s) 341
NlaIII CATG 5 cut(s) 931, 1285, 1588, 1939, 2011
NlaIV GGNNCC 1 cut(s) 159
NmuCI GTSAC 1 cut(s) 1721
NsiI ATGCAT 2 cut(s) 613, 1564
NspI RCATGY 1 cut(s) 931
NspV TTCGAA 2 cut(s) 806, 1707
PaeR7I CTCGAG 1 cut(s) 2049
PciI ACATGT 1 cut(s) 927
PciSI GCTCTTC 2 cut(s) 766, 901
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PctI GAATGC 2 cut(s) 145, 446
PfeI GAWTC 3 cut(s) 560, 590, 770
PflMI CCANNNNNTGG 1 cut(s) 1387
PleI GAGTC 3 cut(s) 1018, 1728, 2035
PmaCI CACGTG 1 cut(s) 677
PmlI CACGTG 1 cut(s) 677
PpsI GAGTC 3 cut(s) 1018, 1728, 2035
Ppu21I YACGTR 1 cut(s) 677
PpuMI RGGWCCY 1 cut(s) 1836
PscI ACATGT 1 cut(s) 927
PshBI ATTAAT 1 cut(s) 864
PsiI TTATAA 2 cut(s) 1340, 1515
Psp124BI GAGCTC 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 1836
Psp6I CCWGG 2 cut(s) 631, 1104
PspCI CACGTG 1 cut(s) 677
PspEI GGTNACC 1 cut(s) 1568
PspFI CCCAGC 1 cut(s) 880
PspGI CCWGG 2 cut(s) 631, 1104
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 4 cut(s) 225, 264, 1438, 1836
PspPPI RGGWCCY 1 cut(s) 1836
PspXI VCTCGAGB 1 cut(s) 2049
PsrI GAACNNNNNNTAC 2 cut(s) 39, 71
PstNI CAGNNNCTG 1 cut(s) 1322
PvuII CAGCTG 1 cut(s) 515
RsaI GTAC 4 cut(s) 57, 72, 535, 917
RsaNI GTAC 4 cut(s) 56, 71, 534, 916
SacI GAGCTC 1 cut(s) 255
SapI GCTCTTC 2 cut(s) 766, 901
Sau3AI GATC 3 cut(s) 1266, 1587, 1810
Sau96I GGNCC 4 cut(s) 225, 264, 1438, 1836
SchI GAGTC 3 cut(s) 1019, 1729, 2036
ScrFI CCNGG 2 cut(s) 633, 1106
SduI GDGCHC 2 cut(s) 255, 761
SexAI ACCWGGT 1 cut(s) 1104
SfaNI GCATC 6 cut(s) 1079, 1549, 1571, 1729, 1784, 2010
SfcI CTRYAG 1 cut(s) 1039
Sfr274I CTCGAG 1 cut(s) 2049
SfuI TTCGAA 2 cut(s) 806, 1707
SinI GGWCC 2 cut(s) 264, 1836
SlaI CTCGAG 1 cut(s) 2049
SmlI CTYRAG 1 cut(s) 2049
SmoI CTYRAG 1 cut(s) 2049
SpeI ACTAGT 1 cut(s) 695
SspI AATATT 1 cut(s) 1172
SspMI CTAG 6 cut(s) 342, 519, 575, 696, 1310, 1682
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 2 cut(s) 631, 1104
StyI CCWWGG 2 cut(s) 981, 1297
TaaI ACNGT 4 cut(s) 1631, 1906, 1951, 2097
TaiI ACGT 2 cut(s) 409, 679
TaqI TCGA 9 cut(s) 375, 381, 595, 806, 1128, 1152, 1707, 1735, 2050
TatI WGTACW 2 cut(s) 70, 533
TauI GCSGC 4 cut(s) 121, 124, 196, 348
TfiI GAWTC 3 cut(s) 560, 590, 770
TscAI CASTG 2 cut(s) 49, 1909
TseFI GTSAC 1 cut(s) 1721
Tsp45I GTSAC 1 cut(s) 1721
TspDTI ATGAA 7 cut(s) 17, 705, 792, 1181, 1298, 1343, 2062
TspRI CASTG 2 cut(s) 49, 1909
Van91I CCANNNNNTGG 1 cut(s) 1387
VpaK11BI GGWCC 2 cut(s) 264, 1836
VspI ATTAAT 1 cut(s) 864
XapI RAATTY 5 cut(s) 479, 538, 808, 1398, 1822
XceI RCATGY 1 cut(s) 931
XhoI CTCGAG 1 cut(s) 2049
XmiI GTMKAC 1 cut(s) 2040
XspI CTAG 6 cut(s) 342, 519, 575, 696, 1310, 1682
Zsp2I ATGCAT 2 cut(s) 613, 1564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.