RLG00000018896

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002469
Physical Location & Seq
Reverse (-)
42428013 .. 42429253
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018896

Sequence Viewer

Length: 480 bp
ATGAATGCTAGGTTAGGTCTCGACCAACCAGAAGGCCAATCTCGATCGCTCCGGCATCGTCCCCAATTACTGCTCCAAGTTCTCAGCCAAGAACAAGACTCCGACCTCCCTCTACCGAAGAACTCCTCGGCGAAAGCTCCAAGACCCCAATTATATCCAAAACGTACACTAGTATTGGTCAATGTCATGGTTGAGGGACTCGTAAGAAGCAATCAAACATCTTATGTGGAATCTCTTCCATTTGGAATGGATTTTTATGCTGAAACTGAAAGCAAGGGTGGTGATTGGAATAATGGTGTTGCAAATTTGGTTTCTCAAATAGACTGGATTTTACTTTTTGAGTTGATCGTACAAACTGCCATGAGGAATACAGAACACTGCCTAAGGCTACAAGCAGTCTCTATTCTGAATGTCATTGTAATGAAAAGTAGTCTTTTATGGAGAGGGAAATGTTTTGTCGGACACTGGTGTTTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.02

Weight (kDa)

8.88

Isoelectric Point (pI)

61.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 304
AfaI GTAC 2 cut(s) 166, 351
AgsI TTSAA 1 cut(s) 475
AhlI ACTAGT 1 cut(s) 169
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
Alw26I GTCTC 2 cut(s) 23, 403
AoxI GGCC 1 cut(s) 34
ApoI RAATTY 1 cut(s) 304
Asp700I GAANNNNTTC 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 293
AxyI CCTNAGG 1 cut(s) 383
BcoDI GTCTC 2 cut(s) 23, 403
BcuI ACTAGT 1 cut(s) 169
BfaI CTAG 2 cut(s) 9, 170
BmsI GCATC 1 cut(s) 64
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 126
Bse1I ACTGG 2 cut(s) 329, 470
Bse21I CCTNAGG 1 cut(s) 383
BseDI CCNNGG 1 cut(s) 126
BseMII CTCAG 1 cut(s) 97
BseNI ACTGG 2 cut(s) 329, 470
BseRI GAGGAG 1 cut(s) 115
Bsh1285I CGRYCG 1 cut(s) 47
BshFI GGCC 1 cut(s) 36
BsiEI CGRYCG 1 cut(s) 47
BsiSI CCGG 1 cut(s) 52
BslFI GGGAC 2 cut(s) 45, 210
BsmAI GTCTC 2 cut(s) 23, 403
BsmFI GGGAC 2 cut(s) 45, 210
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 36
Bso31I GGTCTC 1 cut(s) 23
Bsp143I GATC 2 cut(s) 44, 345
BspANI GGCC 1 cut(s) 36
BspCNI CTCAG 1 cut(s) 96
BspTNI GGTCTC 1 cut(s) 23
BsrI ACTGG 2 cut(s) 329, 470
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 2 cut(s) 44, 345
Bst6I CTCTTC 1 cut(s) 240
BstDEI CTNAG 2 cut(s) 83, 383
BstKTI GATC 2 cut(s) 47, 348
BstMAI GTCTC 2 cut(s) 23, 403
BstMBI GATC 2 cut(s) 44, 345
BstMCI CGRYCG 1 cut(s) 47
Bsu36I CCTNAGG 1 cut(s) 383
BsuRI GGCC 1 cut(s) 36
BtsI GCAGTG 1 cut(s) 376
BtsIMutI CAGTG 2 cut(s) 376, 463
Csp6I GTAC 2 cut(s) 165, 350
CviAII CATG 2 cut(s) 187, 361
CviJI RGCY 4 cut(s) 36, 87, 137, 388
CviKI_1 RGCY 4 cut(s) 36, 87, 137, 388
CviQI GTAC 2 cut(s) 165, 350
DdeI CTNAG 2 cut(s) 83, 383
DpnI GATC 2 cut(s) 46, 347
DpnII GATC 2 cut(s) 44, 345
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 23
Eco81I CCTNAGG 1 cut(s) 383
FaeI CATG 2 cut(s) 190, 364
FaiI YATR 6 cut(s) 154, 188, 225, 258, 362, 439
FaqI GGGAC 2 cut(s) 45, 210
FatI CATG 2 cut(s) 186, 360
FspBI CTAG 2 cut(s) 9, 170
HaeIII GGCC 1 cut(s) 36
HapII CCGG 1 cut(s) 52
Hin1II CATG 2 cut(s) 190, 364
HinfI GANTC 3 cut(s) 98, 198, 230
HpaII CCGG 1 cut(s) 52
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 1 cut(s) 167
Hpy188I TCNGA 3 cut(s) 103, 408, 461
Hpy188III TCNNGA 2 cut(s) 20, 42
Hpy8I GTNNAC 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 26
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 1 cut(s) 302
HpyF3I CTNAG 2 cut(s) 83, 383
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 2 cut(s) 190, 364
Kzo9I GATC 2 cut(s) 44, 345
LmnI GCTCC 3 cut(s) 54, 78, 142
LpnPI CCDG 4 cut(s) 42, 65, 310, 451
LweI GCATC 1 cut(s) 64
MaeI CTAG 2 cut(s) 9, 170
MaeII ACGT 1 cut(s) 163
MalI GATC 2 cut(s) 46, 347
MboI GATC 2 cut(s) 44, 345
MboII GAAGA 2 cut(s) 130, 227
MluCI AATT 3 cut(s) 65, 149, 304
MlyI GAGTC 2 cut(s) 92, 192
MmeI TCCRAC 2 cut(s) 126, 439
MnlI CCTC 6 cut(s) 116, 120, 136, 187, 357, 437
MroXI GAANNNNTTC 1 cut(s) 234
MslI CAYNNNNRTG 1 cut(s) 419
MspI CCGG 1 cut(s) 52
Mva1269I GAATGC 1 cut(s) 10
NdeII GATC 2 cut(s) 44, 345
NlaIII CATG 2 cut(s) 190, 364
NmeAIII GCCGAG 1 cut(s) 107
PctI GAATGC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 230
Ple19I CGATCG 1 cut(s) 47
PleI GAGTC 2 cut(s) 92, 192
PpsI GAGTC 2 cut(s) 92, 192
PvuI CGATCG 1 cut(s) 47
RsaI GTAC 2 cut(s) 166, 351
RsaNI GTAC 2 cut(s) 165, 350
RseI CAYNNNNRTG 1 cut(s) 419
Sau3AI GATC 2 cut(s) 44, 345
SchI GAGTC 2 cut(s) 92, 192
SetI ASST 5 cut(s) 14, 19, 108, 139, 166
SfaNI GCATC 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 419
SpeI ACTAGT 1 cut(s) 169
Sse9I AATT 3 cut(s) 65, 149, 304
SspMI CTAG 2 cut(s) 9, 170
TaiI ACGT 1 cut(s) 166
TaqI TCGA 2 cut(s) 21, 43
TasI AATT 3 cut(s) 65, 149, 304
TfiI GAWTC 1 cut(s) 230
TscAI CASTG 2 cut(s) 383, 470
TspDTI ATGAA 2 cut(s) 17, 437
TspRI CASTG 2 cut(s) 383, 470
XapI RAATTY 1 cut(s) 304
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 2 cut(s) 9, 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.