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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G45610 AT5G45610 |
| fragaria_vesca | FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 |
| malus_domestica | MD06G1024600.v1.1 |
| prunus_persica | Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 |
| pyrus_communis | pycom06g01990 |
| rosa_chinensis | RchiOBHm_Chr7g0212401 |
| rosa_laevigata | RLG00000002892 RLG00000018896 |
| rosa_multiflora | Rmu_sc0001911.1_g000056 Rmu_sc0007576.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00246860 |
| rosa_rugosa | Rorug07G0133800 Rorug07G0133900 |
| rosa_samantha | Rh2DG427300 Rh7AG266600 Rh7BG260700 Rh7CG283500 Rh7DG273600 |
| rosa_wichuraiana | Rw7G022800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1509 |
| Acc36I | ACCTGC | 1 cut(s) | 1950 |
| AccI | GTMKAC | 2 cut(s) | 969, 1236 |
| AccII | CGCG | 3 cut(s) | 35, 72, 145 |
| AciI | CCGC | 8 cut(s) | 35, 92, 110, 113, 143, 186, 194, 276 |
| AclWI | GGATC | 1 cut(s) | 700 |
| AcoI | YGGCCR | 3 cut(s) | 1372, 1932, 1941 |
| AcsI | RAATTY | 2 cut(s) | 1219, 1493 |
| AcuI | CTGAAG | 2 cut(s) | 419, 422 |
| AcvI | CACGTG | 1 cut(s) | 200 |
| AcyI | GRCGYC | 1 cut(s) | 1874 |
| AfaI | GTAC | 5 cut(s) | 63, 444, 513, 1574, 1842 |
| AfeI | AGCGCT | 1 cut(s) | 161 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 216, 239, 240, 1381 |
| AflII | CTTAAG | 1 cut(s) | 1034 |
| AflIII | ACRYGT | 2 cut(s) | 199, 1024 |
| AhlI | ACTAGT | 2 cut(s) | 611, 964 |
| AjnI | CCWGG | 1 cut(s) | 1002 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2001, 2033 |
| Alw21I | GWGCWC | 1 cut(s) | 395 |
| Alw26I | GTCTC | 5 cut(s) | 178, 408, 900, 1318, 1920 |
| AlwI | GGATC | 1 cut(s) | 700 |
| Aor51HI | AGCGCT | 1 cut(s) | 161 |
| AoxI | GGCC | 5 cut(s) | 1372, 1848, 1932, 1941, 2003 |
| ApeKI | GCWGC | 7 cut(s) | 257, 260, 367, 473, 845, 1723, 1769 |
| ApoI | RAATTY | 2 cut(s) | 1219, 1493 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 23, 55 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 432 |
| AspLEI | GCGC | 5 cut(s) | 72, 147, 162, 246, 336 |
| AspS9I | GGNCC | 2 cut(s) | 207, 1830 |
| AsuC2I | CCSGG | 1 cut(s) | 1969 |
| AsuHPI | GGTGA | 3 cut(s) | 581, 2033, 2078 |
| AsuNHI | GCTAGC | 1 cut(s) | 679 |
| AvaII | GGWCC | 2 cut(s) | 207, 1830 |
| AxyI | CCTNAGG | 1 cut(s) | 1298 |
| BalI | TGGCCA | 2 cut(s) | 1934, 1943 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 832, 864 |
| BauI | CACGAG | 1 cut(s) | 1230 |
| BbrPI | CACGTG | 1 cut(s) | 200 |
| Bbv12I | GWGCWC | 1 cut(s) | 395 |
| BbvI | GCAGC | 7 cut(s) | 244, 247, 379, 460, 857, 1710, 1781 |
| BccI | CCATC | 5 cut(s) | 247, 337, 461, 1513, 1891 |
| BceAI | ACGGC | 4 cut(s) | 79, 100, 155, 1430 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 851, 885 |
| BciT130I | CCWGG | 1 cut(s) | 1004 |
| BclI | TGATCA | 1 cut(s) | 1260 |
| BcnI | CCSGG | 1 cut(s) | 1969 |
| BcoDI | GTCTC | 5 cut(s) | 178, 408, 900, 1318, 1920 |
| BcuI | ACTAGT | 2 cut(s) | 611, 964 |
| BfmI | CTRYAG | 2 cut(s) | 819, 976 |
| BfoI | RGCGCY | 3 cut(s) | 163, 247, 337 |
| BfrI | CTTAAG | 1 cut(s) | 1034 |
| BfuAI | ACCTGC | 1 cut(s) | 1950 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1940 |
| BmcAI | AGTACT | 1 cut(s) | 1574 |
| Bme1390I | CCNGG | 2 cut(s) | 1004, 1969 |
| Bme18I | GGWCC | 2 cut(s) | 207, 1830 |
| BmgT120I | GGNCC | 2 cut(s) | 207, 1830 |
| BmiI | GGNNCC | 1 cut(s) | 108 |
| BmrFI | CCNGG | 2 cut(s) | 1004, 1969 |
| BmrI | ACTGGG | 1 cut(s) | 1249 |
| BmsI | GCATC | 5 cut(s) | 937, 1016, 1513, 1543, 1723 |
| BmtI | GCTAGC | 1 cut(s) | 683 |
| BmuI | ACTGGG | 1 cut(s) | 1249 |
| BoxI | GACNNNNGTC | 1 cut(s) | 920 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 563, 595 |
| BpuEI | CTTGAG | 1 cut(s) | 433 |
| BpuMI | CCSGG | 1 cut(s) | 1969 |
| BsaAI | YACGTR | 1 cut(s) | 200 |
| BsaHI | GRCGYC | 1 cut(s) | 1874 |
| BsaJI | CCNNGG | 1 cut(s) | 918 |
| BsaWI | WCCGGW | 2 cut(s) | 103, 1502 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 158, 188 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 216, 239, 240, 1381 |
| Bse1I | ACTGG | 5 cut(s) | 1244, 1386, 1491, 1671, 1935 |
| Bse21I | CCTNAGG | 1 cut(s) | 1298 |
| Bse3DI | GCAATG | 2 cut(s) | 188, 278 |
| BseBI | CCWGG | 1 cut(s) | 1004 |
| BseDI | CCNNGG | 1 cut(s) | 918 |
| BseGI | GGATG | 5 cut(s) | 54, 314, 952, 1528, 1543 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 216, 239, 240, 1381 |
| BseMI | GCAATG | 2 cut(s) | 188, 278 |
| BseMII | CTCAG | 6 cut(s) | 101, 408, 569, 797, 1102, 1245 |
| BseNI | ACTGG | 5 cut(s) | 1244, 1386, 1491, 1671, 1935 |
| BseRI | GAGGAG | 3 cut(s) | 166, 1529, 1646 |
| BseXI | GCAGC | 7 cut(s) | 244, 247, 379, 460, 857, 1710, 1781 |
| BseYI | CCCAGC | 1 cut(s) | 156 |
| Bsh1236I | CGCG | 3 cut(s) | 35, 72, 145 |
| BshFI | GGCC | 5 cut(s) | 1374, 1850, 1934, 1943, 2005 |
| BsiHKAI | GWGCWC | 1 cut(s) | 395 |
| BsiSI | CCGG | 5 cut(s) | 104, 1375, 1503, 1969, 2006 |
| BslFI | GGGAC | 3 cut(s) | 41, 1125, 1951 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 216, 239, 240, 1381 |
| BsmAI | GTCTC | 5 cut(s) | 178, 408, 900, 1318, 1920 |
| BsmBI | CGTCTC | 1 cut(s) | 178 |
| BsmFI | GGGAC | 3 cut(s) | 41, 1125, 1951 |
| BsmI | GAATGC | 1 cut(s) | 2003 |
| BsnI | GGCC | 5 cut(s) | 1374, 1850, 1934, 1943, 2005 |
| Bsp1286I | GDGCHC | 1 cut(s) | 395 |
| Bsp1407I | TGTACA | 1 cut(s) | 511 |
| Bsp143I | GATC | 4 cut(s) | 692, 1260, 1395, 1780 |
| BspACI | CCGC | 8 cut(s) | 35, 92, 110, 113, 143, 186, 194, 276 |
| BspANI | GGCC | 5 cut(s) | 1374, 1850, 1934, 1943, 2005 |
| BspCNI | CTCAG | 6 cut(s) | 100, 407, 568, 798, 1101, 1246 |
| BspFNI | CGCG | 3 cut(s) | 35, 72, 145 |
| BspLI | GGNNCC | 1 cut(s) | 108 |
| BspMAI | CTGCAG | 2 cut(s) | 823, 980 |
| BspMI | ACCTGC | 1 cut(s) | 1950 |
| BspOI | GCTAGC | 1 cut(s) | 683 |
| BspPI | GGATC | 1 cut(s) | 700 |
| BspTI | CTTAAG | 1 cut(s) | 1034 |
| BsrDI | GCAATG | 2 cut(s) | 188, 278 |
| BsrGI | TGTACA | 1 cut(s) | 511 |
| BsrI | ACTGG | 5 cut(s) | 1244, 1386, 1491, 1671, 1935 |
| BssECI | CCNNGG | 1 cut(s) | 918 |
| BssMI | GATC | 4 cut(s) | 692, 1260, 1395, 1780 |
| BssNI | GRCGYC | 1 cut(s) | 1874 |
| BssSI | CACGAG | 1 cut(s) | 1230 |
| BssT1I | CCWWGG | 1 cut(s) | 918 |
| Bst2BI | CACGAG | 1 cut(s) | 1230 |
| Bst2UI | CCWGG | 1 cut(s) | 1004 |
| Bst4CI | ACNGT | 4 cut(s) | 1211, 1577, 1625, 1900 |
| Bst6I | CTCTTC | 3 cut(s) | 127, 184, 1155 |
| BstACI | GRCGYC | 1 cut(s) | 1874 |
| BstAFI | CTTAAG | 1 cut(s) | 1034 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1553 |
| BstAUI | TGTACA | 1 cut(s) | 511 |
| BstBAI | YACGTR | 1 cut(s) | 200 |
| BstC8I | GCNNGC | 6 cut(s) | 681, 748, 1410, 1612, 1957, 2003 |
| BstDEI | CTNAG | 9 cut(s) | 87, 394, 555, 806, 1046, 1088, 1254, 1298, 1800 |
| BstEII | GGTNACC | 1 cut(s) | 2021 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 214 |
| BstF5I | GGATG | 5 cut(s) | 54, 314, 952, 1528, 1543 |
| BstFNI | CGCG | 3 cut(s) | 35, 72, 145 |
| BstH2I | RGCGCY | 3 cut(s) | 163, 247, 337 |
| BstHHI | GCGC | 5 cut(s) | 72, 147, 162, 246, 336 |
| BstKTI | GATC | 4 cut(s) | 695, 1263, 1398, 1783 |
| BstMAI | GTCTC | 5 cut(s) | 178, 408, 900, 1318, 1920 |
| BstMBI | GATC | 4 cut(s) | 692, 1260, 1395, 1780 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1418, 1553, 1676, 1775, 1940 |
| BstNI | CCWGG | 1 cut(s) | 1004 |
| BstNSI | RCATGY | 3 cut(s) | 359, 1028, 1910 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 920 |
| BstPI | GGTNACC | 1 cut(s) | 2021 |
| BstSCI | CCNGG | 2 cut(s) | 1002, 1967 |
| BstSFI | CTRYAG | 2 cut(s) | 819, 976 |
| BstUI | CGCG | 3 cut(s) | 35, 72, 145 |
| BstV1I | GCAGC | 7 cut(s) | 244, 247, 379, 460, 857, 1710, 1781 |
| BstX2I | RGATCY | 1 cut(s) | 692 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 204 |
| BstYI | RGATCY | 1 cut(s) | 692 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1298 |
| BsuRI | GGCC | 5 cut(s) | 1374, 1850, 1934, 1943, 2005 |
| BtsCI | GGATG | 5 cut(s) | 54, 314, 952, 1528, 1543 |
| BtsI | GCAGTG | 1 cut(s) | 816 |
| BtsIMutI | CAGTG | 3 cut(s) | 816, 1379, 1621 |
| BveI | ACCTGC | 1 cut(s) | 1950 |
| Cac8I | GCNNGC | 6 cut(s) | 681, 748, 1410, 1612, 1957, 2003 |
| CfoI | GCGC | 5 cut(s) | 72, 147, 162, 246, 336 |
| Cfr13I | GGNCC | 2 cut(s) | 207, 1830 |
| CseI | GACGC | 3 cut(s) | 41, 61, 1863 |
| Csp6I | GTAC | 5 cut(s) | 62, 443, 512, 1573, 1841 |
| CviAII | CATG | 7 cut(s) | 356, 787, 1025, 1102, 1276, 1907, 1930 |
| CviQI | GTAC | 5 cut(s) | 62, 443, 512, 1573, 1841 |
| DdeI | CTNAG | 9 cut(s) | 87, 394, 555, 806, 1046, 1088, 1254, 1298, 1800 |
| DpnI | GATC | 4 cut(s) | 694, 1262, 1397, 1782 |
| DpnII | GATC | 4 cut(s) | 692, 1260, 1395, 1780 |
| EaeI | YGGCCR | 3 cut(s) | 1372, 1932, 1941 |
| Eam1104I | CTCTTC | 3 cut(s) | 127, 184, 1155 |
| EarI | CTCTTC | 3 cut(s) | 127, 184, 1155 |
| Eco130I | CCWWGG | 1 cut(s) | 918 |
| Eco147I | AGGCCT | 1 cut(s) | 1850 |
| Eco47I | GGWCC | 2 cut(s) | 207, 1830 |
| Eco47III | AGCGCT | 1 cut(s) | 161 |
| Eco57I | CTGAAG | 2 cut(s) | 419, 422 |
| Eco72I | CACGTG | 1 cut(s) | 200 |
| Eco81I | CCTNAGG | 1 cut(s) | 1298 |
| Eco91I | GGTNACC | 1 cut(s) | 2021 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 214 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1830 |
| EcoO65I | GGTNACC | 1 cut(s) | 2021 |
| EcoRII | CCWGG | 1 cut(s) | 1002 |
| EcoT14I | CCWWGG | 1 cut(s) | 918 |
| ErhI | CCWWGG | 1 cut(s) | 918 |
| Esp3I | CGTCTC | 1 cut(s) | 178 |
| FaeI | CATG | 7 cut(s) | 359, 790, 1028, 1105, 1279, 1910, 1933 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1333, 1365 |
| FaqI | GGGAC | 3 cut(s) | 41, 1125, 1951 |
| FatI | CATG | 7 cut(s) | 355, 786, 1024, 1101, 1275, 1906, 1929 |
| FbaI | TGATCA | 1 cut(s) | 1260 |
| FblI | GTMKAC | 2 cut(s) | 969, 1236 |
| FokI | GGATG | 5 cut(s) | 41, 321, 959, 1535, 1550 |
| GlaI | GCGC | 5 cut(s) | 71, 146, 161, 245, 335 |
| GsaI | CCCAGC | 1 cut(s) | 160 |
| HaeII | RGCGCY | 3 cut(s) | 163, 247, 337 |
| HaeIII | GGCC | 5 cut(s) | 1374, 1850, 1934, 1943, 2005 |
| HapII | CCGG | 5 cut(s) | 104, 1375, 1503, 1969, 2006 |
| HgaI | GACGC | 3 cut(s) | 41, 61, 1863 |
| HhaI | GCGC | 5 cut(s) | 72, 147, 162, 246, 336 |
| Hin1I | GRCGYC | 1 cut(s) | 1874 |
| Hin1II | CATG | 7 cut(s) | 359, 790, 1028, 1105, 1279, 1910, 1933 |
| Hin6I | GCGC | 5 cut(s) | 70, 145, 160, 244, 334 |
| HinP1I | GCGC | 5 cut(s) | 70, 145, 160, 244, 334 |
| HincII | GTYRAC | 2 cut(s) | 576, 970 |
| HindII | GTYRAC | 2 cut(s) | 576, 970 |
| HpaII | CCGG | 5 cut(s) | 104, 1375, 1503, 1969, 2006 |
| HphI | GGTGA | 3 cut(s) | 581, 2033, 2078 |
| Hpy166II | GTNNAC | 6 cut(s) | 576, 970, 1144, 1237, 1619, 2055 |
| Hpy188I | TCNGA | 9 cut(s) | 82, 376, 397, 487, 658, 1131, 1255, 1785, 2014 |
| Hpy188III | TCNNGA | 8 cut(s) | 233, 306, 361, 913, 1052, 1628, 1686, 1730 |
| Hpy8I | GTNNAC | 6 cut(s) | 576, 970, 1144, 1237, 1619, 2055 |
| Hpy99I | CGWCG | 2 cut(s) | 35, 47 |
| HpyAV | CCTTC | 5 cut(s) | 400, 824, 1052, 1061, 1116 |
| HpyCH4III | ACNGT | 4 cut(s) | 1211, 1577, 1625, 1900 |
| HpyCH4IV | ACGT | 1 cut(s) | 199 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1418, 1553, 1676, 1775, 1940 |
| HpyF3I | CTNAG | 9 cut(s) | 87, 394, 555, 806, 1046, 1088, 1254, 1298, 1800 |
| HpySE526I | ACGT | 1 cut(s) | 199 |
| Hsp92I | GRCGYC | 1 cut(s) | 1874 |
| Hsp92II | CATG | 7 cut(s) | 359, 790, 1028, 1105, 1279, 1910, 1933 |
| HspAI | GCGC | 5 cut(s) | 70, 145, 160, 244, 334 |
| Ksp22I | TGATCA | 1 cut(s) | 1260 |
| Kzo9I | GATC | 4 cut(s) | 692, 1260, 1395, 1780 |
| LmnI | GCTCC | 3 cut(s) | 167, 346, 470 |
| Lsp1109I | GCAGC | 7 cut(s) | 244, 247, 379, 460, 857, 1710, 1781 |
| LweI | GCATC | 5 cut(s) | 937, 1016, 1513, 1543, 1723 |
| MaeII | ACGT | 1 cut(s) | 199 |
| MaeIII | GTNAC | 3 cut(s) | 872, 1715, 2021 |
| MalI | GATC | 4 cut(s) | 694, 1262, 1397, 1782 |
| MboI | GATC | 4 cut(s) | 692, 1260, 1395, 1780 |
| MflI | RGATCY | 1 cut(s) | 692 |
| MhlI | GDGCHC | 1 cut(s) | 395 |
| MlsI | TGGCCA | 2 cut(s) | 1934, 1943 |
| MluCI | AATT | 9 cut(s) | 237, 515, 674, 733, 1075, 1219, 1403, 1471, 1493 |
| MluNI | TGGCCA | 2 cut(s) | 1934, 1943 |
| MlyI | GAGTC | 5 cut(s) | 581, 1107, 1139, 1723, 2043 |
| MmeI | TCCRAC | 2 cut(s) | 189, 924 |
| Mox20I | TGGCCA | 2 cut(s) | 1934, 1943 |
| MroXI | GAANNNNTTC | 1 cut(s) | 432 |
| MscI | TGGCCA | 2 cut(s) | 1934, 1943 |
| MseI | TTAA | 9 cut(s) | 98, 984, 1035, 1491, 1751, 1794, 1863, 1913, 2040 |
| MslI | CAYNNNNRTG | 4 cut(s) | 567, 639, 785, 1334 |
| Msp20I | TGGCCA | 2 cut(s) | 1934, 1943 |
| MspCI | CTTAAG | 1 cut(s) | 1034 |
| MspI | CCGG | 5 cut(s) | 104, 1375, 1503, 1969, 2006 |
| MspR9I | CCNGG | 2 cut(s) | 1004, 1969 |
| Mva1269I | GAATGC | 1 cut(s) | 2003 |
| MvaI | CCWGG | 1 cut(s) | 1004 |
| MvnI | CGCG | 3 cut(s) | 35, 72, 145 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1418, 1553, 1676, 1775, 1940 |
| NciI | CCSGG | 1 cut(s) | 1969 |
| NdeII | GATC | 4 cut(s) | 692, 1260, 1395, 1780 |
| NheI | GCTAGC | 1 cut(s) | 679 |
| NlaIII | CATG | 7 cut(s) | 359, 790, 1028, 1105, 1279, 1910, 1933 |
| NlaIV | GGNNCC | 1 cut(s) | 108 |
| NmuCI | GTSAC | 2 cut(s) | 1715, 2021 |
| NspI | RCATGY | 3 cut(s) | 359, 1028, 1910 |
| PceI | AGGCCT | 1 cut(s) | 1850 |
| PciI | ACATGT | 1 cut(s) | 1024 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 39, 1113 |
| PctI | GAATGC | 1 cut(s) | 2003 |
| PdmI | GAANNNNTTC | 1 cut(s) | 432 |
| PfeI | GAWTC | 6 cut(s) | 83, 229, 503, 1126, 1582, 2009 |
| PflFI | GACNNNGTC | 1 cut(s) | 1623 |
| PfoI | TCCNGGA | 1 cut(s) | 1967 |
| PleI | GAGTC | 5 cut(s) | 580, 1107, 1139, 1722, 2042 |
| PmaCI | CACGTG | 1 cut(s) | 200 |
| PmlI | CACGTG | 1 cut(s) | 200 |
| PpsI | GAGTC | 5 cut(s) | 580, 1107, 1139, 1722, 2042 |
| Ppu21I | YACGTR | 1 cut(s) | 200 |
| PpuMI | RGGWCCY | 1 cut(s) | 1830 |
| PscI | ACATGT | 1 cut(s) | 1024 |
| PshAI | GACNNNNGTC | 1 cut(s) | 920 |
| PsiI | TTATAA | 1 cut(s) | 1509 |
| Psp5II | RGGWCCY | 1 cut(s) | 1830 |
| Psp6I | CCWGG | 1 cut(s) | 1002 |
| PspCI | CACGTG | 1 cut(s) | 200 |
| PspEI | GGTNACC | 1 cut(s) | 2021 |
| PspFI | CCCAGC | 1 cut(s) | 156 |
| PspGI | CCWGG | 1 cut(s) | 1002 |
| PspN4I | GGNNCC | 1 cut(s) | 108 |
| PspPI | GGNCC | 2 cut(s) | 207, 1830 |
| PspPPI | RGGWCCY | 1 cut(s) | 1830 |
| PstI | CTGCAG | 2 cut(s) | 823, 980 |
| PsuI | RGATCY | 1 cut(s) | 692 |
| PsyI | GACNNNGTC | 1 cut(s) | 1623 |
| RsaI | GTAC | 5 cut(s) | 63, 444, 513, 1574, 1842 |
| RsaNI | GTAC | 5 cut(s) | 62, 443, 512, 1573, 1841 |
| RseI | CAYNNNNRTG | 4 cut(s) | 567, 639, 785, 1334 |
| SalI | GTCGAC | 1 cut(s) | 968 |
| SaqAI | TTAA | 9 cut(s) | 98, 984, 1035, 1491, 1751, 1794, 1863, 1913, 2040 |
| Sau3AI | GATC | 4 cut(s) | 692, 1260, 1395, 1780 |
| Sau96I | GGNCC | 2 cut(s) | 207, 1830 |
| ScaI | AGTACT | 1 cut(s) | 1574 |
| SchI | GAGTC | 5 cut(s) | 581, 1107, 1139, 1723, 2043 |
| ScrFI | CCNGG | 2 cut(s) | 1004, 1969 |
| SduI | GDGCHC | 1 cut(s) | 395 |
| SfaNI | GCATC | 5 cut(s) | 937, 1016, 1513, 1543, 1723 |
| SfcI | CTRYAG | 2 cut(s) | 819, 976 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1940 |
| SinI | GGWCC | 2 cut(s) | 207, 1830 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 567, 639, 785, 1334 |
| SmlI | CTYRAG | 2 cut(s) | 448, 1034 |
| SmoI | CTYRAG | 2 cut(s) | 448, 1034 |
| SpeI | ACTAGT | 2 cut(s) | 611, 964 |
| Sse9I | AATT | 9 cut(s) | 237, 515, 674, 733, 1075, 1219, 1403, 1471, 1493 |
| SseBI | AGGCCT | 1 cut(s) | 1850 |
| SsiI | CCGC | 8 cut(s) | 35, 92, 110, 113, 143, 186, 194, 276 |
| SspI | AATATT | 1 cut(s) | 1755 |
| StuI | AGGCCT | 1 cut(s) | 1850 |
| StyD4I | CCNGG | 2 cut(s) | 1002, 1967 |
| StyI | CCWWGG | 1 cut(s) | 918 |
| TaaI | ACNGT | 4 cut(s) | 1211, 1577, 1625, 1900 |
| TaiI | ACGT | 1 cut(s) | 202 |
| TaqI | TCGA | 5 cut(s) | 45, 125, 222, 969, 1107 |
| TasI | AATT | 9 cut(s) | 237, 515, 674, 733, 1075, 1219, 1403, 1471, 1493 |
| TatI | WGTACW | 4 cut(s) | 61, 442, 511, 1572 |
| TauI | GCSGC | 4 cut(s) | 38, 94, 115, 196 |
| TfiI | GAWTC | 6 cut(s) | 83, 229, 503, 1126, 1582, 2009 |
| Tru1I | TTAA | 9 cut(s) | 98, 984, 1035, 1491, 1751, 1794, 1863, 1913, 2040 |
| Tru9I | TTAA | 9 cut(s) | 98, 984, 1035, 1491, 1751, 1794, 1863, 1913, 2040 |
| TscAI | CASTG | 3 cut(s) | 823, 1386, 1628 |
| TseFI | GTSAC | 2 cut(s) | 1715, 2021 |
| TseI | GCWGC | 7 cut(s) | 257, 260, 367, 473, 845, 1723, 1769 |
| Tsp45I | GTSAC | 2 cut(s) | 1715, 2021 |
| TspRI | CASTG | 3 cut(s) | 823, 1386, 1628 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1623 |
| Vha464I | CTTAAG | 1 cut(s) | 1034 |
| VpaK11BI | GGWCC | 2 cut(s) | 207, 1830 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 214 |
| XapI | RAATTY | 2 cut(s) | 1219, 1493 |
| XbaI | TCTAGA | 2 cut(s) | 1051, 1627 |
| XceI | RCATGY | 3 cut(s) | 359, 1028, 1910 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 739, 770 |
| XmiI | GTMKAC | 2 cut(s) | 969, 1236 |
| XmnI | GAANNNNTTC | 1 cut(s) | 432 |
| ZrmI | AGTACT | 1 cut(s) | 1574 |