Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002469

Physical Location & Seq

Genomic Coordinates Forward (+)

61870085 .. 61871389

Gene Structure 1305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG427300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAGGACGAGGGATTAGAAGATTGGGACGACGCGGCTTTCGTCGAAGAACTCATCCAAGTACAAGAGCGCGTCATCTCCGATTCTCAGCCGCCGTTAAGACCGGAACCGCCGCCGTCCTCTTCGATTACCTACTCGCCTCCGCGCCACCTCTCCCAGCGCTCAAACGCCGTCTCCTCTTCCTCCGCATTGCCGCCGCGTGTTTGGACCTCCCAGAGGCTGGACAAGAATCCCGAAATTGGGCGCTTGAAGATGGCTGCTGCTTCTTCTTCTTCTTCCGCATTGCCTCCTTGTGTTTCGGGCAACTCTGGATGTGATAAGGAACGCGAAATCGGGCGCTTGAAGGAACAAGAGTGCTCAGAACTGAAGAAGGAAAGAGACAAAAAAGATGAACAGCTTCAGTTTGTACTCTCAAGGAATGAAAACAAAGATGGAACTGCTAGGAACTCTGATAGTGCAAATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.18

Weight (kDa)

4.95

Isoelectric Point (pI)

70.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45610 AT5G45610
fragaria_vesca	FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380
malus_domestica	MD06G1024600.v1.1
prunus_persica	Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1
pyrus_communis	pycom06g01990
rosa_chinensis	RchiOBHm_Chr7g0212401
rosa_laevigata	RLG00000002892 RLG00000018896
rosa_multiflora	Rmu_sc0001911.1_g000056 Rmu_sc0007576.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246860
rosa_rugosa	Rorug07G0133800 Rorug07G0133900
rosa_samantha	Rh2DG427300 Rh7AG266600 Rh7BG260700 Rh7CG283500 Rh7DG273600
rosa_wichuraiana	Rw7G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	220
AccII	CGCG	5 cut(s)	35, 72, 145, 199, 327
AciI	CCGC	9 cut(s)	35, 92, 110, 113, 143, 186, 194, 197, 279
AcsI	RAATTY	1 cut(s)	460
AcuI	CTGAAG	2 cut(s)	383, 386
AfaI	GTAC	2 cut(s)	63, 408
AfeI	AGCGCT	1 cut(s)	161
AfiI	CCNNNNNNNGG	4 cut(s)	216, 220, 239, 240
AgsI	TTSAA	2 cut(s)	250, 343
AluBI	AGCT	1 cut(s)	397
AluI	AGCT	1 cut(s)	397
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	2 cut(s)	178, 372
AlwNI	CAGNNNCTG	1 cut(s)	220
Aor51HI	AGCGCT	1 cut(s)	161
ApeKI	GCWGC	2 cut(s)	257, 260
ApoI	RAATTY	1 cut(s)	460
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
Asp700I	GAANNNNTTC	1 cut(s)	396
AspLEI	GCGC	5 cut(s)	72, 147, 162, 246, 339
AspS9I	GGNCC	1 cut(s)	207
AvaII	GGWCC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	359
BbvI	GCAGC	2 cut(s)	244, 247
BccI	CCATC	2 cut(s)	247, 425
BceAI	ACGGC	3 cut(s)	79, 100, 155
BcoDI	GTCTC	2 cut(s)	178, 372
BfaI	CTAG	1 cut(s)	441
BfoI	RGCGCY	3 cut(s)	163, 247, 340
BisI	GCNGC	7 cut(s)	36, 92, 113, 194, 197, 258, 261
BlsI	GCNGC	7 cut(s)	37, 93, 114, 195, 198, 259, 262
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	397
BsaWI	WCCGGW	1 cut(s)	103
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	4 cut(s)	216, 220, 239, 240
Bse3DI	GCAATG	2 cut(s)	188, 281
BseGI	GGATG	2 cut(s)	54, 317
BseLI	CCNNNNNNNGG	4 cut(s)	216, 220, 239, 240
BseMI	GCAATG	2 cut(s)	188, 281
BseMII	CTCAG	2 cut(s)	101, 372
BseRI	GAGGAG	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	244, 247
BseYI	CCCAGC	1 cut(s)	156
Bsh1236I	CGCG	5 cut(s)	35, 72, 145, 199, 327
BsiHKAI	GWGCWC	1 cut(s)	359
BsiSI	CCGG	1 cut(s)	104
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	4 cut(s)	216, 220, 239, 240
BsmAI	GTCTC	2 cut(s)	178, 372
BsmBI	CGTCTC	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	359
BspACI	CCGC	9 cut(s)	35, 92, 110, 113, 143, 186, 194, 197, 279
BspCNI	CTCAG	2 cut(s)	100, 371
BspFNI	CGCG	5 cut(s)	35, 72, 145, 199, 327
BspLI	GGNNCC	1 cut(s)	108
BsrDI	GCAATG	2 cut(s)	188, 281
Bst6I	CTCTTC	2 cut(s)	127, 184
BstDEI	CTNAG	2 cut(s)	87, 358
BstENI	CCTNNNNNAGG	1 cut(s)	214
BstF5I	GGATG	2 cut(s)	54, 317
BstFNI	CGCG	5 cut(s)	35, 72, 145, 199, 327
BstH2I	RGCGCY	3 cut(s)	163, 247, 340
BstHHI	GCGC	5 cut(s)	72, 147, 162, 246, 339
BstMAI	GTCTC	2 cut(s)	178, 372
BstUI	CGCG	5 cut(s)	35, 72, 145, 199, 327
BstV1I	GCAGC	2 cut(s)	244, 247
BtsCI	GGATG	2 cut(s)	54, 317
CaiI	CAGNNNCTG	1 cut(s)	220
CfoI	GCGC	5 cut(s)	72, 147, 162, 246, 339
Cfr13I	GGNCC	1 cut(s)	207
CseI	GACGC	2 cut(s)	41, 61
Csp6I	GTAC	2 cut(s)	62, 407
CviJI	RGCY	5 cut(s)	38, 91, 220, 257, 397
CviKI_1	RGCY	5 cut(s)	38, 91, 220, 257, 397
CviQI	GTAC	2 cut(s)	62, 407
DdeI	CTNAG	2 cut(s)	87, 358
Eam1104I	CTCTTC	2 cut(s)	127, 184
EarI	CTCTTC	2 cut(s)	127, 184
Eco47I	GGWCC	1 cut(s)	207
Eco47III	AGCGCT	1 cut(s)	161
Eco57I	CTGAAG	2 cut(s)	383, 386
EcoNI	CCTNNNNNAGG	1 cut(s)	214
Esp3I	CGTCTC	1 cut(s)	178
FaiI	YATR	1 cut(s)	466
FaqI	GGGAC	1 cut(s)	41
Fnu4HI	GCNGC	7 cut(s)	36, 92, 113, 194, 197, 258, 261
FokI	GGATG	2 cut(s)	41, 324
Fsp4HI	GCNGC	7 cut(s)	36, 92, 113, 194, 197, 258, 261
FspBI	CTAG	1 cut(s)	441
GlaI	GCGC	5 cut(s)	71, 146, 161, 245, 338
GluI	GCNGC	7 cut(s)	36, 92, 113, 194, 197, 258, 261
GsaI	CCCAGC	1 cut(s)	160
HaeII	RGCGCY	3 cut(s)	163, 247, 340
HapII	CCGG	1 cut(s)	104
HgaI	GACGC	2 cut(s)	41, 61
HhaI	GCGC	5 cut(s)	72, 147, 162, 246, 339
Hin6I	GCGC	5 cut(s)	70, 145, 160, 244, 337
HinP1I	GCGC	5 cut(s)	70, 145, 160, 244, 337
HinfI	GANTC	2 cut(s)	83, 229
HpaII	CCGG	1 cut(s)	104
Hpy188I	TCNGA	3 cut(s)	82, 361, 451
Hpy188III	TCNNGA	2 cut(s)	233, 309
Hpy99I	CGWCG	2 cut(s)	35, 47
HpyAV	CCTTC	2 cut(s)	337, 364
HpyCH4V	TGCA	1 cut(s)	458
HpyF3I	CTNAG	2 cut(s)	87, 358
HspAI	GCGC	5 cut(s)	70, 145, 160, 244, 337
LpnPI	CCDG	5 cut(s)	117, 170, 206, 227, 294
Lsp1109I	GCAGC	2 cut(s)	244, 247
MaeI	CTAG	1 cut(s)	441
MhlI	GDGCHC	1 cut(s)	359
MluCI	AATT	2 cut(s)	237, 460
MnlI	CCTC	9 cut(s)	4, 130, 150, 161, 187, 193, 210, 220, 297
MroXI	GAANNNNTTC	1 cut(s)	396
MseI	TTAA	1 cut(s)	98
MspI	CCGG	1 cut(s)	104
MvnI	CGCG	5 cut(s)	35, 72, 145, 199, 327
NlaIV	GGNNCC	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	83, 229
PflMI	CCANNNNNTGG	1 cut(s)	220
PkrI	GCNGC	7 cut(s)	37, 93, 114, 195, 198, 259, 262
PspFI	CCCAGC	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	207
PstNI	CAGNNNCTG	1 cut(s)	220
RsaI	GTAC	2 cut(s)	63, 408
RsaNI	GTAC	2 cut(s)	62, 407
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	7 cut(s)	36, 92, 113, 194, 197, 258, 261
Sau96I	GGNCC	1 cut(s)	207
SduI	GDGCHC	1 cut(s)	359
SetI	ASST	4 cut(s)	134, 153, 212, 399
SinI	GGWCC	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	412
SmoI	CTYRAG	1 cut(s)	412
Sse9I	AATT	2 cut(s)	237, 460
SsiI	CCGC	9 cut(s)	35, 92, 110, 113, 143, 186, 194, 197, 279
SspMI	CTAG	1 cut(s)	441
TaqI	TCGA	2 cut(s)	45, 125
TasI	AATT	2 cut(s)	237, 460
TatI	WGTACW	2 cut(s)	61, 406
TauI	GCSGC	5 cut(s)	38, 94, 115, 196, 199
TfiI	GAWTC	2 cut(s)	83, 229
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TseI	GCWGC	2 cut(s)	257, 260
TspDTI	ATGAA	2 cut(s)	405, 435
Van91I	CCANNNNNTGG	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	207
XagI	CCTNNNNNAGG	1 cut(s)	214
XapI	RAATTY	1 cut(s)	460
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.