Rh7BG260700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
23776707 .. 23785648
8942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG260700.1

Sequence Viewer

Length: 1776 bp
ATGGAGGACGAGGGATTAGAAGATTGGGACGACGCGGCTTTCGTCGAAGAACTCATCCAAGTACAAGAGCGTGTCATCTCCGATTCTCAGCCGCCGTTAAAACCTGAACCGCCGCCGTCCTCTTCCATTACCTACTCGCCTCCGCGCCACCTCTCCCAGCGCTCCAACGCCGTCTCCTCTTCCTCCGCATTGCCGCCGCGTGTTTGGACCTCCCAGAGGCCCGACAAGAATCCCGAAATTGGGCGCTTGAAGATGGCTGCTTCTTCTTCTTCTTCCGCATTGCCTCCTTGTGTTTCGGGCAACTCTGGATGTGATAAGGAACGCGAAATCGGGCGCTTGAAGGAACAAGAGTGCTCAGAACTGAAGAAGGAAAGAGACAAAAAAGATGAACAGCTTCAGTTTGTACTCTCAAGGAATGAAAAGAAAGATGGAGCTGCTAGGAACTCTGATAGTGCAAATTTGGAATCTTCTGTACAATTACAAATGGCAAGAGGTTCAAGTCATCAGCCTAGTTCTCGGGTTCATATTGGTGTGTCAACCTCGAAAGCCACAGGCGTTCAAACTGATGAAACTAGTGCTTCTGCCCAAGCAATCCATAATGATGACCAGCAAATTTCTGATAACCTCTCCAAGAAATTGCTAGCTATCTGGGGATCTCCAAATGAACAAGAGTTGGGAAAAAATTTCATATCCAATTTGCTTATGGCTTGCCAAACAGATTTCCATTCTCTTTCTGGGTGCATTGGCATGAATATATCCTCTAAACTGAGAATGGACACTGCAGGAGATGAAGGCTCTTGTATTGCAGCTTCACAGAATATGCACATATCTCGCAACCCAGAAGTTGCAAAAGTGTCTCATCTTTATTCTGTCTTGACCAAGGTCAATAATGGAATGATAAAGTTGGATGCTCTGTTTCAACCACTAGTCGACCTCTGCAGTCTTAAAAATGTTGTCATTGTCAAGGCATCTCTACATATACTACATGTGTTTCTTAAGCACCTTCTAAGTCTAGAAAGGCCGGTAGAAGGAAGGGTCAATGTCATGGTTGAGGGACTCGTAAGAAGGAATCAGACATCTTATGTGGACTCTCTTCCATTTGGAATGGATTTTTATGCTGAAACTGAAAGCAAGAGTGGAGATTGGAATAACGGTGTTGCAAATTTGGTTTCTCGCGTAGACTGGGTTTCACTTTTTGAGTTGATCGTACAAACTGCCATGAGGAATACAGAACACTGCCTAAGGCTACAAGCAGTCTCTATTATGAATGTCATTGTAATGAAAAGTAATGCTTTTATGGATAGGGAAATGTTTGGCCGGACACTGGTGTTTGAAATGATCGCAAAATTGCTTGCAAAGGAAGCTGGTTTTGAGGTGCGAAAACAAGCCGTGCAACTTCTGTATATGCTACTGAATTGTCCTAAAATACTGGTTAAATTCTGTACCGGTTATAAAGAGGAGATGGATGCTGGTGCTATGGATGAAAATGCAGGAGAGGCTTTGACTTTTCAAAAGTACTGTATGATTCTTCAAGGATTGGCAGATTGTCTAGCTTGCTGTGGACACTGTCTAGAGGAGTTGATACTTTGCCGAAATGCTGTTCTTTTACTGGCTTTCCTAGCCTCATCTGGAATATCTGGCTTTGAAATACTTGCGAGTCACAAGCTGCTTCAAGATGCAAACTTTCTAATGTTAATATTACAAGTTTTGGCAGCAGAAGTAGATCAGACAGCAGTTAATACCAAGCAACAACATCAGCTTTACAAAGAAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

591

Amino Acids

65.36

Weight (kDa)

5.78

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1452
AccI GTMKAC 2 cut(s) 930, 1179
AccII CGCG 5 cut(s) 35, 145, 199, 324, 1176
AciI CCGC 9 cut(s) 35, 92, 110, 113, 143, 186, 194, 197, 276
AclWI GGATC 1 cut(s) 661
AcoI YGGCCR 1 cut(s) 1315
AcsI RAATTY 5 cut(s) 457, 612, 682, 1162, 1436
AcuI CTGAAG 2 cut(s) 380, 383
AfaI GTAC 6 cut(s) 63, 405, 474, 1209, 1444, 1517
AfeI AGCGCT 1 cut(s) 161
AfiI CCNNNNNNNGG 5 cut(s) 216, 239, 240, 1028, 1324
AflII CTTAAG 1 cut(s) 995
AflIII ACRYGT 1 cut(s) 985
AgeI ACCGGT 1 cut(s) 1445
AhlI ACTAGT 2 cut(s) 572, 925
AluBI AGCT 8 cut(s) 394, 434, 644, 809, 1364, 1553, 1666, 1759
AluI AGCT 8 cut(s) 394, 434, 644, 809, 1364, 1553, 1666, 1759
Alw21I GWGCWC 1 cut(s) 356
Alw26I GTCTC 4 cut(s) 178, 369, 861, 1261
AlwI GGATC 1 cut(s) 661
Ama87I CYCGRG 1 cut(s) 516
Aor51HI AGCGCT 1 cut(s) 161
AoxI GGCC 3 cut(s) 218, 1019, 1315
ApeKI GCWGC 5 cut(s) 257, 434, 806, 1666, 1712
ApoI RAATTY 5 cut(s) 457, 612, 682, 1162, 1436
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
AsiGI ACCGGT 1 cut(s) 1445
Asp700I GAANNNNTTC 1 cut(s) 393
AspLEI GCGC 4 cut(s) 147, 162, 246, 336
AspS9I GGNCC 2 cut(s) 207, 219
AsuNHI GCTAGC 1 cut(s) 640
AvaI CYCGRG 1 cut(s) 516
AvaII GGWCC 1 cut(s) 207
AxyI CCTNAGG 1 cut(s) 1241
BarI GAAGNNNNNNTAC 2 cut(s) 793, 825
Bbv12I GWGCWC 1 cut(s) 356
BbvI GCAGC 5 cut(s) 244, 421, 818, 1653, 1724
BccI CCATC 3 cut(s) 247, 422, 1456
BceAI ACGGC 4 cut(s) 79, 100, 155, 1373
BcgI CGANNNNNNTGC 2 cut(s) 812, 846
BcoDI GTCTC 4 cut(s) 178, 369, 861, 1261
BcuI ACTAGT 2 cut(s) 572, 925
BfaI CTAG 9 cut(s) 438, 510, 573, 641, 926, 1013, 1550, 1571, 1619
BfmI CTRYAG 2 cut(s) 780, 937
BfoI RGCGCY 3 cut(s) 163, 247, 337
BfrI CTTAAG 1 cut(s) 995
BmcAI AGTACT 1 cut(s) 1517
Bme18I GGWCC 1 cut(s) 207
BmeT110I CYCGRG 1 cut(s) 516
BmgT120I GGNCC 2 cut(s) 207, 219
BmrI ACTGGG 1 cut(s) 1192
BmsI GCATC 4 cut(s) 898, 977, 1456, 1666
BmtI GCTAGC 1 cut(s) 644
BmuI ACTGGG 1 cut(s) 1192
BoxI GACNNNNGTC 1 cut(s) 881
BpuEI CTTGAG 1 cut(s) 394
BsaJI CCNNGG 1 cut(s) 879
BsaWI WCCGGW 1 cut(s) 1445
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 5 cut(s) 216, 239, 240, 1028, 1324
Bse118I RCCGGY 2 cut(s) 1021, 1445
Bse1I ACTGG 4 cut(s) 1187, 1329, 1434, 1614
Bse21I CCTNAGG 1 cut(s) 1241
Bse3DI GCAATG 2 cut(s) 188, 278
BseDI CCNNGG 1 cut(s) 879
BseGI GGATG 5 cut(s) 54, 314, 913, 1471, 1486
BseLI CCNNNNNNNGG 5 cut(s) 216, 239, 240, 1028, 1324
BseMI GCAATG 2 cut(s) 188, 278
BseMII CTCAG 3 cut(s) 101, 369, 758
BseNI ACTGG 4 cut(s) 1187, 1329, 1434, 1614
BseRI GAGGAG 3 cut(s) 166, 1472, 1589
BseXI GCAGC 5 cut(s) 244, 421, 818, 1653, 1724
BseYI CCCAGC 1 cut(s) 156
Bsh1236I CGCG 5 cut(s) 35, 145, 199, 324, 1176
BshFI GGCC 3 cut(s) 220, 1021, 1317
BshTI ACCGGT 1 cut(s) 1445
BsiHKAI GWGCWC 1 cut(s) 356
BsiHKCI CYCGRG 1 cut(s) 516
BsiSI CCGG 3 cut(s) 1022, 1318, 1446
BslFI GGGAC 2 cut(s) 41, 1068
BslI CCNNNNNNNGG 5 cut(s) 216, 239, 240, 1028, 1324
BsmAI GTCTC 4 cut(s) 178, 369, 861, 1261
BsmBI CGTCTC 1 cut(s) 178
BsmFI GGGAC 2 cut(s) 41, 1068
BsnI GGCC 3 cut(s) 220, 1021, 1317
BsoBI CYCGRG 1 cut(s) 516
Bsp1286I GDGCHC 1 cut(s) 356
Bsp1407I TGTACA 1 cut(s) 472
Bsp143I GATC 4 cut(s) 653, 1203, 1338, 1723
BspACI CCGC 9 cut(s) 35, 92, 110, 113, 143, 186, 194, 197, 276
BspANI GGCC 3 cut(s) 220, 1021, 1317
BspCNI CTCAG 3 cut(s) 100, 368, 759
BspFNI CGCG 5 cut(s) 35, 145, 199, 324, 1176
BspMAI CTGCAG 2 cut(s) 784, 941
BspOI GCTAGC 1 cut(s) 644
BspPI GGATC 1 cut(s) 661
BspTI CTTAAG 1 cut(s) 995
BsrDI GCAATG 2 cut(s) 188, 278
BsrFI RCCGGY 2 cut(s) 1021, 1445
BsrGI TGTACA 1 cut(s) 472
BsrI ACTGG 4 cut(s) 1187, 1329, 1434, 1614
BssAI RCCGGY 2 cut(s) 1021, 1445
BssECI CCNNGG 1 cut(s) 879
BssMI GATC 4 cut(s) 653, 1203, 1338, 1723
BssT1I CCWWGG 1 cut(s) 879
Bst4CI ACNGT 3 cut(s) 1154, 1520, 1568
Bst6I CTCTTC 3 cut(s) 127, 184, 1098
BstAFI CTTAAG 1 cut(s) 995
BstAUI TGTACA 1 cut(s) 472
BstC8I GCNNGC 4 cut(s) 642, 709, 1353, 1555
BstDEI CTNAG 5 cut(s) 87, 355, 767, 1007, 1241
BstENI CCTNNNNNAGG 1 cut(s) 214
BstF5I GGATG 5 cut(s) 54, 314, 913, 1471, 1486
BstFNI CGCG 5 cut(s) 35, 145, 199, 324, 1176
BstH2I RGCGCY 3 cut(s) 163, 247, 337
BstHHI GCGC 4 cut(s) 147, 162, 246, 336
BstKTI GATC 4 cut(s) 656, 1206, 1341, 1726
BstMAI GTCTC 4 cut(s) 178, 369, 861, 1261
BstMBI GATC 4 cut(s) 653, 1203, 1338, 1723
BstMWI GCNNNNNNNGC 3 cut(s) 1361, 1496, 1619
BstNSI RCATGY 1 cut(s) 989
BstPAI GACNNNNGTC 1 cut(s) 881
BstSFI CTRYAG 2 cut(s) 780, 937
BstUI CGCG 5 cut(s) 35, 145, 199, 324, 1176
BstV1I GCAGC 5 cut(s) 244, 421, 818, 1653, 1724
BstX2I RGATCY 1 cut(s) 653
BstYI RGATCY 1 cut(s) 653
Bsu36I CCTNAGG 1 cut(s) 1241
BsuRI GGCC 3 cut(s) 220, 1021, 1317
BtsCI GGATG 5 cut(s) 54, 314, 913, 1471, 1486
BtsI GCAGTG 2 cut(s) 777, 1234
BtsIMutI CAGTG 4 cut(s) 777, 1234, 1322, 1564
Cac8I GCNNGC 4 cut(s) 642, 709, 1353, 1555
CfoI GCGC 4 cut(s) 147, 162, 246, 336
Cfr10I RCCGGY 2 cut(s) 1021, 1445
Cfr13I GGNCC 2 cut(s) 207, 219
CseI GACGC 1 cut(s) 41
Csp6I GTAC 6 cut(s) 62, 404, 473, 1208, 1443, 1516
CspAI ACCGGT 1 cut(s) 1445
CviAII CATG 4 cut(s) 748, 986, 1045, 1219
CviQI GTAC 6 cut(s) 62, 404, 473, 1208, 1443, 1516
DdeI CTNAG 5 cut(s) 87, 355, 767, 1007, 1241
DpnI GATC 4 cut(s) 655, 1205, 1340, 1725
DpnII GATC 4 cut(s) 653, 1203, 1338, 1723
EaeI YGGCCR 1 cut(s) 1315
Eam1104I CTCTTC 3 cut(s) 127, 184, 1098
EarI CTCTTC 3 cut(s) 127, 184, 1098
Eco130I CCWWGG 1 cut(s) 879
Eco47I GGWCC 1 cut(s) 207
Eco47III AGCGCT 1 cut(s) 161
Eco57I CTGAAG 2 cut(s) 380, 383
Eco81I CCTNAGG 1 cut(s) 1241
Eco88I CYCGRG 1 cut(s) 516
EcoNI CCTNNNNNAGG 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 879
ErhI CCWWGG 1 cut(s) 879
Esp3I CGTCTC 1 cut(s) 178
FaeI CATG 4 cut(s) 751, 989, 1048, 1222
FalI AAGNNNNNCTT 2 cut(s) 1276, 1308
FaqI GGGAC 2 cut(s) 41, 1068
FatI CATG 4 cut(s) 747, 985, 1044, 1218
FblI GTMKAC 2 cut(s) 930, 1179
FokI GGATG 5 cut(s) 41, 321, 920, 1478, 1493
FspBI CTAG 9 cut(s) 438, 510, 573, 641, 926, 1013, 1550, 1571, 1619
GlaI GCGC 4 cut(s) 146, 161, 245, 335
GsaI CCCAGC 1 cut(s) 160
HaeII RGCGCY 3 cut(s) 163, 247, 337
HaeIII GGCC 3 cut(s) 220, 1021, 1317
HapII CCGG 3 cut(s) 1022, 1318, 1446
HgaI GACGC 1 cut(s) 41
HhaI GCGC 4 cut(s) 147, 162, 246, 336
Hin1II CATG 4 cut(s) 751, 989, 1048, 1222
Hin6I GCGC 4 cut(s) 145, 160, 244, 334
HinP1I GCGC 4 cut(s) 145, 160, 244, 334
HincII GTYRAC 2 cut(s) 537, 931
HindII GTYRAC 2 cut(s) 537, 931
HinfI GANTC 8 cut(s) 83, 229, 464, 1056, 1069, 1088, 1525, 1657
HpaII CCGG 3 cut(s) 1022, 1318, 1446
Hpy166II GTNNAC 5 cut(s) 537, 931, 1087, 1180, 1562
Hpy188I TCNGA 6 cut(s) 82, 358, 448, 619, 1074, 1728
Hpy188III TCNNGA 7 cut(s) 233, 306, 874, 1013, 1571, 1629, 1673
Hpy8I GTNNAC 5 cut(s) 537, 931, 1087, 1180, 1562
Hpy99I CGWCG 2 cut(s) 35, 47
HpyAV CCTTC 7 cut(s) 334, 361, 785, 1013, 1022, 1026, 1059
HpyCH4III ACNGT 3 cut(s) 1154, 1520, 1568
HpyF10VI GCNNNNNNNGC 3 cut(s) 1361, 1496, 1619
HpyF3I CTNAG 5 cut(s) 87, 355, 767, 1007, 1241
Hsp92II CATG 4 cut(s) 751, 989, 1048, 1222
HspAI GCGC 4 cut(s) 145, 160, 244, 334
Kzo9I GATC 4 cut(s) 653, 1203, 1338, 1723
LmnI GCTCC 2 cut(s) 167, 431
Lsp1109I GCAGC 5 cut(s) 244, 421, 818, 1653, 1724
LweI GCATC 4 cut(s) 898, 977, 1456, 1666
MaeI CTAG 9 cut(s) 438, 510, 573, 641, 926, 1013, 1550, 1571, 1619
MaeIII GTNAC 1 cut(s) 1658
MalI GATC 4 cut(s) 655, 1205, 1340, 1725
MboI GATC 4 cut(s) 653, 1203, 1338, 1723
MflI RGATCY 1 cut(s) 653
MhlI GDGCHC 1 cut(s) 356
MlyI GAGTC 3 cut(s) 1050, 1082, 1666
MmeI TCCRAC 2 cut(s) 189, 885
MroXI GAANNNNTTC 1 cut(s) 393
MseI TTAA 6 cut(s) 98, 945, 996, 1434, 1694, 1737
MslI CAYNNNNRTG 4 cut(s) 528, 600, 746, 1277
MspCI CTTAAG 1 cut(s) 995
MspI CCGG 3 cut(s) 1022, 1318, 1446
MvnI CGCG 5 cut(s) 35, 145, 199, 324, 1176
MwoI GCNNNNNNNGC 3 cut(s) 1361, 1496, 1619
NdeII GATC 4 cut(s) 653, 1203, 1338, 1723
NheI GCTAGC 1 cut(s) 640
NlaIII CATG 4 cut(s) 751, 989, 1048, 1222
NmuCI GTSAC 1 cut(s) 1658
NspI RCATGY 1 cut(s) 989
PciI ACATGT 1 cut(s) 985
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 5 cut(s) 83, 229, 464, 1069, 1525
PflFI GACNNNGTC 1 cut(s) 1566
PinAI ACCGGT 1 cut(s) 1445
PleI GAGTC 3 cut(s) 1050, 1082, 1665
PpsI GAGTC 3 cut(s) 1050, 1082, 1665
PscI ACATGT 1 cut(s) 985
PshAI GACNNNNGTC 1 cut(s) 881
PsiI TTATAA 1 cut(s) 1452
PspFI CCCAGC 1 cut(s) 156
PspPI GGNCC 2 cut(s) 207, 219
PstI CTGCAG 2 cut(s) 784, 941
PsuI RGATCY 1 cut(s) 653
PsyI GACNNNGTC 1 cut(s) 1566
RsaI GTAC 6 cut(s) 63, 405, 474, 1209, 1444, 1517
RsaNI GTAC 6 cut(s) 62, 404, 473, 1208, 1443, 1516
RseI CAYNNNNRTG 4 cut(s) 528, 600, 746, 1277
SalI GTCGAC 1 cut(s) 929
SaqAI TTAA 6 cut(s) 98, 945, 996, 1434, 1694, 1737
Sau3AI GATC 4 cut(s) 653, 1203, 1338, 1723
Sau96I GGNCC 2 cut(s) 207, 219
ScaI AGTACT 1 cut(s) 1517
SchI GAGTC 3 cut(s) 1050, 1082, 1666
SduI GDGCHC 1 cut(s) 356
SfaNI GCATC 4 cut(s) 898, 977, 1456, 1666
SfcI CTRYAG 2 cut(s) 780, 937
SinI GGWCC 1 cut(s) 207
SmiMI CAYNNNNRTG 4 cut(s) 528, 600, 746, 1277
SmlI CTYRAG 2 cut(s) 409, 995
SmoI CTYRAG 2 cut(s) 409, 995
SpeI ACTAGT 2 cut(s) 572, 925
SsiI CCGC 9 cut(s) 35, 92, 110, 113, 143, 186, 194, 197, 276
SspI AATATT 1 cut(s) 1698
SspMI CTAG 9 cut(s) 438, 510, 573, 641, 926, 1013, 1550, 1571, 1619
StyI CCWWGG 1 cut(s) 879
TaaI ACNGT 3 cut(s) 1154, 1520, 1568
TaqI TCGA 3 cut(s) 45, 542, 930
TatI WGTACW 4 cut(s) 61, 403, 472, 1515
TauI GCSGC 5 cut(s) 38, 94, 115, 196, 199
TfiI GAWTC 5 cut(s) 83, 229, 464, 1069, 1525
Tru1I TTAA 6 cut(s) 98, 945, 996, 1434, 1694, 1737
Tru9I TTAA 6 cut(s) 98, 945, 996, 1434, 1694, 1737
TscAI CASTG 4 cut(s) 784, 1241, 1329, 1571
TseFI GTSAC 1 cut(s) 1658
TseI GCWGC 5 cut(s) 257, 434, 806, 1666, 1712
Tsp45I GTSAC 1 cut(s) 1658
TspRI CASTG 4 cut(s) 784, 1241, 1329, 1571
Tth111I GACNNNGTC 1 cut(s) 1566
Vha464I CTTAAG 1 cut(s) 995
VpaK11BI GGWCC 1 cut(s) 207
XagI CCTNNNNNAGG 1 cut(s) 214
XapI RAATTY 5 cut(s) 457, 612, 682, 1162, 1436
XbaI TCTAGA 2 cut(s) 1012, 1570
XceI RCATGY 1 cut(s) 989
XcmI CCANNNNNNNNNTGG 2 cut(s) 700, 731
XmiI GTMKAC 2 cut(s) 930, 1179
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 9 cut(s) 438, 510, 573, 641, 926, 1013, 1550, 1571, 1619
ZrmI AGTACT 1 cut(s) 1517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.