Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001911.1

Orthogroup ID

OG0002469

Physical Location & Seq

Genomic Coordinates Forward (+)

203680 .. 214397

Gene Structure 10718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001911.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

atgagaaatacagttgtagttactcttcgtgttgtttcaaaaaagaagtttggtggtagtggtcaggctcgggctcaggcccgtgaggctgcacatgacatccaacatgggttgggctttgttataaacagtggagatcatattttgacttggggtgataacattaaagactctttcttcccgaactatttgactctttgggcacagttatttagaagggatgctttgcttgccatcaaagatttcggaagattccctattatggatcttcgtggagtagcccggcaaagcggagactttggagggaagcatattgattgccacttcaccttgaagcttagcttagcctccggtaacatgcatgtattcaagcagcttctgcccgacataagtcgattaaatggtgccaaaaagtattttcaagcatcatgttttgcctttatacattcaagcccaaactccccagtggatgtccattctcaggatcaggaagtagtgattgctttgggaagcaatgtgggtgacagactacataatttcaatgaagccttgcagttgatgaaaaaatcaggcgtgcaaataacaagacatggctgtttgtatgagacagcaccagcctacgtaactgaccagcctaactttttaaactctgcagttagagcggttacaaaacttgggcctcatgagctattaggagcactgaagaaaattgaaaaggacatgggtcgtacccaaggtataaggatggaggacgagggattagaagattgggacgacgcggctttcgtcgaagaactcatccaagtacaagagcgcgtcatctccgattctcagccgccgttaagaccggaaccgccgccgtcctcttcgattacctactcgcctccgcgccacctctcccagcgctccaacgccgtctcctcttcctccgcattgccgccgcgtgtttggacctcccagaggctcgacaagaatcccgaaattgggcgcttgaagatggctgcttcttcttcttccgcattgcctccttgtgtttcgggcaactctggatgtgataaggaacgcgaaatcgggcgcttgaagatggagcttgggcatgtcttgaagcagctttcagattatgaacaagagtgctcagaactgaagaaggaaagagacaaaaaagatgaacagcttcagtttgtactctcaaggaatgaaaagaaagatggagctgctaggaactctgatagtgcaaacttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003848 GO:0004156 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009396 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016772 GO:0016778 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046653 GO:0046654 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 map00790 map01100

Pfam Domains

Protein Families

HPPK Pterin_bind

Protein Analysis

414

Amino Acids

46.0

Weight (kDa)

8.61

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45610 AT5G45610
fragaria_vesca	FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380
malus_domestica	MD06G1024600.v1.1
prunus_persica	Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1
pyrus_communis	pycom06g01990
rosa_chinensis	RchiOBHm_Chr7g0212401
rosa_laevigata	RLG00000002892 RLG00000018896
rosa_multiflora	Rmu_sc0001911.1_g000056 Rmu_sc0007576.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246860
rosa_rugosa	Rorug07G0133800 Rorug07G0133900
rosa_samantha	Rh2DG427300 Rh7AG266600 Rh7BG260700 Rh7CG283500 Rh7DG273600
rosa_wichuraiana	Rw7G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	404
AccBSI	CCGCTC	1 cut(s)	662
AccII	CGCG	5 cut(s)	779, 816, 889, 943, 1065
AclWI	GGATC	2 cut(s)	273, 492
AcuI	CTGAAG	3 cut(s)	722, 1160, 1163
AfaI	GTAC	3 cut(s)	730, 807, 1185
AfeI	AGCGCT	1 cut(s)	905
AfiI	CCNNNNNNNGG	5 cut(s)	262, 481, 960, 983, 984
AluBI	AGCT	8 cut(s)	337, 342, 376, 688, 1090, 1111, 1174, 1214
AluI	AGCT	8 cut(s)	337, 342, 376, 688, 1090, 1111, 1174, 1214
Alw21I	GWGCWC	2 cut(s)	700, 1136
Alw26I	GTCTC	4 cut(s)	288, 599, 922, 1149
AlwI	GGATC	2 cut(s)	273, 492
AlwNI	CAGNNNCTG	1 cut(s)	379
Ama87I	CYCGRG	1 cut(s)	69
Aor51HI	AGCGCT	1 cut(s)	905
AoxI	GGCC	2 cut(s)	78, 677
ApeKI	GCWGC	5 cut(s)	89, 373, 1001, 1108, 1214
ArsI	GACNNNNNNTTYG	2 cut(s)	767, 799
Asp700I	GAANNNNTTC	1 cut(s)	1173
AspLEI	GCGC	5 cut(s)	816, 891, 906, 990, 1077
AspS9I	GGNCC	3 cut(s)	79, 677, 951
AsuC2I	CCSGG	1 cut(s)	283
AsuHPI	GGTGA	3 cut(s)	167, 319, 533
AvaI	CYCGRG	1 cut(s)	69
AvaII	GGWCC	1 cut(s)	951
BaeGI	GKGCMC	1 cut(s)	205
BanI	GGYRCC	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	76
BarI	GAAGNNNNNNTAC	2 cut(s)	9, 41
Bbv12I	GWGCWC	2 cut(s)	700, 1136
BbvI	GCAGC	5 cut(s)	76, 385, 988, 1120, 1201
BccI	CCATC	5 cut(s)	242, 739, 991, 1078, 1202
BceAI	ACGGC	3 cut(s)	823, 844, 899
BcnI	CCSGG	1 cut(s)	283
BcoDI	GTCTC	4 cut(s)	288, 599, 922, 1149
BfaI	CTAG	1 cut(s)	1218
BfmI	CTRYAG	1 cut(s)	651
BfoI	RGCGCY	3 cut(s)	907, 991, 1078
BglI	GCCNNNNNGGC	1 cut(s)	86
BlpI	GCTNAGC	2 cut(s)	338, 343
Bme1390I	CCNGG	1 cut(s)	283
Bme18I	GGWCC	1 cut(s)	951
BmeT110I	CYCGRG	1 cut(s)	69
BmgT120I	GGNCC	3 cut(s)	79, 677, 951
BmiI	GGNNCC	2 cut(s)	406, 852
BmrFI	CCNGG	1 cut(s)	283
BmrI	ACTGGG	1 cut(s)	458
BmsI	GCATC	2 cut(s)	211, 434
BmuI	ACTGGG	1 cut(s)	458
BoxI	GACNNNNGTC	2 cut(s)	390, 723
Bpu10I	CCTNAGC	1 cut(s)	75
Bpu1102I	GCTNAGC	2 cut(s)	338, 343
BpuEI	CTTGAG	1 cut(s)	1174
BpuMI	CCSGG	1 cut(s)	283
BsaAI	YACGTR	1 cut(s)	622
BsaJI	CCNNGG	1 cut(s)	733
BsaWI	WCCGGW	2 cut(s)	350, 847
BsaXI	ACNNNNNCTCC	2 cut(s)	902, 932
Bsc4I	CCNNNNNNNGG	5 cut(s)	262, 481, 960, 983, 984
Bse1I	ACTGG	1 cut(s)	464
Bse3DI	GCAATG	3 cut(s)	520, 932, 1019
BseDI	CCNNGG	1 cut(s)	733
BseGI	GGATG	6 cut(s)	99, 226, 475, 750, 798, 1055
BseLI	CCNNNNNNNGG	5 cut(s)	262, 481, 960, 983, 984
BseMI	GCAATG	3 cut(s)	520, 932, 1019
BseMII	CTCAG	4 cut(s)	89, 494, 845, 1149
BseNI	ACTGG	1 cut(s)	464
BseRI	GAGGAG	1 cut(s)	910
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	5 cut(s)	76, 385, 988, 1120, 1201
BseYI	CCCAGC	1 cut(s)	900
BsgI	GTGCAG	1 cut(s)	75
Bsh1236I	CGCG	5 cut(s)	779, 816, 889, 943, 1065
BshFI	GGCC	2 cut(s)	80, 679
BshNI	GGYRCC	1 cut(s)	404
BsiHKAI	GWGCWC	2 cut(s)	700, 1136
BsiHKCI	CYCGRG	1 cut(s)	69
BsiSI	CCGG	3 cut(s)	283, 351, 848
BslFI	GGGAC	1 cut(s)	785
BslI	CCNNNNNNNGG	5 cut(s)	262, 481, 960, 983, 984
BsmAI	GTCTC	4 cut(s)	288, 599, 922, 1149
BsmBI	CGTCTC	1 cut(s)	922
BsmFI	GGGAC	1 cut(s)	785
BsnI	GGCC	2 cut(s)	80, 679
BsoBI	CYCGRG	1 cut(s)	69
Bsp1286I	GDGCHC	4 cut(s)	76, 205, 700, 1136
Bsp143I	GATC	3 cut(s)	136, 265, 484
Bsp1720I	GCTNAGC	2 cut(s)	338, 343
BspANI	GGCC	2 cut(s)	80, 679
BspCNI	CTCAG	4 cut(s)	88, 493, 844, 1148
BspFNI	CGCG	5 cut(s)	779, 816, 889, 943, 1065
BspHI	TCATGA	1 cut(s)	682
BspLI	GGNNCC	2 cut(s)	406, 852
BspMAI	CTGCAG	1 cut(s)	655
BspPI	GGATC	2 cut(s)	273, 492
BspT107I	GGYRCC	1 cut(s)	404
BsrBI	CCGCTC	1 cut(s)	662
BsrDI	GCAATG	3 cut(s)	520, 932, 1019
BsrI	ACTGG	1 cut(s)	464
BssECI	CCNNGG	1 cut(s)	733
BssMI	GATC	3 cut(s)	136, 265, 484
BssT1I	CCWWGG	1 cut(s)	733
Bst4CI	ACNGT	3 cut(s)	13, 131, 207
Bst6I	CTCTTC	3 cut(s)	30, 871, 928
BstAPI	GCANNNNNTGC	1 cut(s)	379
BstBAI	YACGTR	1 cut(s)	622
BstC8I	GCNNGC	2 cut(s)	231, 575
BstDEI	CTNAG	6 cut(s)	75, 338, 343, 480, 831, 1135
BstENI	CCTNNNNNAGG	1 cut(s)	958
BstF5I	GGATG	6 cut(s)	99, 226, 475, 750, 798, 1055
BstFNI	CGCG	5 cut(s)	779, 816, 889, 943, 1065
BstH2I	RGCGCY	3 cut(s)	907, 991, 1078
BstHHI	GCGC	5 cut(s)	816, 891, 906, 990, 1077
BstKTI	GATC	3 cut(s)	139, 268, 487
BstMAI	GTCTC	4 cut(s)	288, 599, 922, 1149
BstMBI	GATC	3 cut(s)	136, 265, 484
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 230, 379, 659, 685
BstNSI	RCATGY	3 cut(s)	361, 365, 1100
BstPAI	GACNNNNGTC	2 cut(s)	390, 723
BstSCI	CCNGG	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	651
BstSLI	GKGCMC	1 cut(s)	205
BstSNI	TACGTA	1 cut(s)	622
BstUI	CGCG	5 cut(s)	779, 816, 889, 943, 1065
BstV1I	GCAGC	5 cut(s)	76, 385, 988, 1120, 1201
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BsuRI	GGCC	2 cut(s)	80, 679
BtsCI	GGATG	6 cut(s)	99, 226, 475, 750, 798, 1055
BtsIMutI	CAGTG	3 cut(s)	136, 471, 698
Cac8I	GCNNGC	2 cut(s)	231, 575
CaiI	CAGNNNCTG	1 cut(s)	379
CciI	TCATGA	1 cut(s)	682
CfoI	GCGC	5 cut(s)	816, 891, 906, 990, 1077
Cfr13I	GGNCC	3 cut(s)	79, 677, 951
CseI	GACGC	2 cut(s)	785, 805
Csp6I	GTAC	3 cut(s)	729, 806, 1184
CviAII	CATG	9 cut(s)	95, 107, 358, 362, 429, 590, 683, 721, 1097
CviQI	GTAC	3 cut(s)	729, 806, 1184
DdeI	CTNAG	6 cut(s)	75, 338, 343, 480, 831, 1135
DpnI	GATC	3 cut(s)	138, 267, 486
DpnII	GATC	3 cut(s)	136, 265, 484
DraI	TTTAAA	1 cut(s)	645
Eam1104I	CTCTTC	3 cut(s)	30, 871, 928
EarI	CTCTTC	3 cut(s)	30, 871, 928
Eco105I	TACGTA	1 cut(s)	622
Eco130I	CCWWGG	1 cut(s)	733
Eco24I	GRGCYC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	951
Eco47III	AGCGCT	1 cut(s)	905
Eco57I	CTGAAG	3 cut(s)	722, 1160, 1163
Eco88I	CYCGRG	1 cut(s)	69
EcoNI	CCTNNNNNAGG	1 cut(s)	958
EcoT14I	CCWWGG	1 cut(s)	733
EcoT22I	ATGCAT	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	733
Esp3I	CGTCTC	1 cut(s)	922
FaeI	CATG	9 cut(s)	98, 110, 361, 365, 432, 593, 686, 724, 1100
FalI	AAGNNNNNCTT	4 cut(s)	208, 240, 326, 358
FaqI	GGGAC	1 cut(s)	785
FatI	CATG	9 cut(s)	94, 106, 357, 361, 428, 589, 682, 720, 1096
FokI	GGATG	6 cut(s)	86, 233, 482, 757, 785, 1062
FriOI	GRGCYC	1 cut(s)	76
FspBI	CTAG	1 cut(s)	1218
GlaI	GCGC	5 cut(s)	815, 890, 905, 989, 1076
GsaI	CCCAGC	1 cut(s)	904
HaeII	RGCGCY	3 cut(s)	907, 991, 1078
HaeIII	GGCC	2 cut(s)	80, 679
HapII	CCGG	3 cut(s)	283, 351, 848
HgaI	GACGC	2 cut(s)	785, 805
HhaI	GCGC	5 cut(s)	816, 891, 906, 990, 1077
Hin1II	CATG	9 cut(s)	98, 110, 361, 365, 432, 593, 686, 724, 1100
Hin6I	GCGC	5 cut(s)	814, 889, 904, 988, 1075
HinP1I	GCGC	5 cut(s)	814, 889, 904, 988, 1075
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	5 cut(s)	170, 193, 252, 827, 973
HpaII	CCGG	3 cut(s)	283, 351, 848
HphI	GGTGA	3 cut(s)	167, 319, 533
Hpy188I	TCNGA	5 cut(s)	248, 826, 1117, 1138, 1228
Hpy188III	TCNNGA	7 cut(s)	181, 482, 488, 683, 977, 1047, 1102
Hpy99I	CGWCG	2 cut(s)	779, 791
HpyAV	CCTTC	2 cut(s)	210, 1141
HpyCH4III	ACNGT	3 cut(s)	13, 131, 207
HpyCH4IV	ACGT	1 cut(s)	621
HpyCH4V	TGCA	6 cut(s)	92, 361, 553, 577, 653, 1235
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 230, 379, 659, 685
HpyF3I	CTNAG	6 cut(s)	75, 338, 343, 480, 831, 1135
HpySE526I	ACGT	1 cut(s)	621
Hsp92II	CATG	9 cut(s)	98, 110, 361, 365, 432, 593, 686, 724, 1100
HspAI	GCGC	5 cut(s)	814, 889, 904, 988, 1075
Kzo9I	GATC	3 cut(s)	136, 265, 484
LmnI	GCTCC	4 cut(s)	695, 911, 1087, 1211
Lsp1109I	GCAGC	5 cut(s)	76, 385, 988, 1120, 1201
LweI	GCATC	2 cut(s)	211, 434
MaeI	CTAG	1 cut(s)	1218
MaeII	ACGT	1 cut(s)	621
MaeIII	GTNAC	5 cut(s)	19, 353, 521, 622, 664
MalI	GATC	3 cut(s)	138, 267, 486
MbiI	CCGCTC	1 cut(s)	662
MboI	GATC	3 cut(s)	136, 265, 484
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	4 cut(s)	76, 205, 700, 1136
MluCI	AATT	3 cut(s)	535, 708, 981
MlyI	GAGTC	2 cut(s)	164, 187
MmeI	TCCRAC	2 cut(s)	127, 933
Mph1103I	ATGCAT	1 cut(s)	363
MroXI	GAANNNNTTC	1 cut(s)	1173
MseI	TTAA	4 cut(s)	165, 398, 644, 842
MspI	CCGG	3 cut(s)	283, 351, 848
MspR9I	CCNGG	1 cut(s)	283
MvnI	CGCG	5 cut(s)	779, 816, 889, 943, 1065
MwoI	GCNNNNNNNGC	5 cut(s)	86, 230, 379, 659, 685
NciI	CCSGG	1 cut(s)	283
NdeII	GATC	3 cut(s)	136, 265, 484
NlaIII	CATG	9 cut(s)	98, 110, 361, 365, 432, 593, 686, 724, 1100
NlaIV	GGNNCC	2 cut(s)	406, 852
NmuCI	GTSAC	1 cut(s)	521
NsiI	ATGCAT	1 cut(s)	363
NspI	RCATGY	3 cut(s)	361, 365, 1100
PagI	TCATGA	1 cut(s)	682
PcsI	WCGNNNNNNNCGW	1 cut(s)	783
PdmI	GAANNNNTTC	1 cut(s)	1173
PfeI	GAWTC	3 cut(s)	252, 827, 973
PleI	GAGTC	2 cut(s)	164, 187
PpsI	GAGTC	2 cut(s)	164, 187
Ppu21I	YACGTR	1 cut(s)	622
PshAI	GACNNNNGTC	2 cut(s)	390, 723
PsiI	TTATAA	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	900
PspN4I	GGNNCC	2 cut(s)	406, 852
PspPI	GGNCC	3 cut(s)	79, 677, 951
PstI	CTGCAG	1 cut(s)	655
PstNI	CAGNNNCTG	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	3 cut(s)	730, 807, 1185
RsaNI	GTAC	3 cut(s)	729, 806, 1184
SaqAI	TTAA	4 cut(s)	165, 398, 644, 842
Sau3AI	GATC	3 cut(s)	136, 265, 484
Sau96I	GGNCC	3 cut(s)	79, 677, 951
SchI	GAGTC	2 cut(s)	164, 187
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	4 cut(s)	76, 205, 700, 1136
SfaNI	GCATC	2 cut(s)	211, 434
SfcI	CTRYAG	1 cut(s)	651
SinI	GGWCC	1 cut(s)	951
SmlI	CTYRAG	1 cut(s)	1189
SmoI	CTYRAG	1 cut(s)	1189
SnaBI	TACGTA	1 cut(s)	622
Sse9I	AATT	3 cut(s)	535, 708, 981
SspMI	CTAG	1 cut(s)	1218
StyD4I	CCNGG	1 cut(s)	281
StyI	CCWWGG	1 cut(s)	733
TaaI	ACNGT	3 cut(s)	13, 131, 207
TaiI	ACGT	1 cut(s)	624
TaqI	TCGA	4 cut(s)	394, 789, 869, 966
TasI	AATT	3 cut(s)	535, 708, 981
TatI	WGTACW	2 cut(s)	805, 1183
TauI	GCSGC	5 cut(s)	782, 838, 859, 940, 943
TfiI	GAWTC	3 cut(s)	252, 827, 973
Tru1I	TTAA	4 cut(s)	165, 398, 644, 842
Tru9I	TTAA	4 cut(s)	165, 398, 644, 842
TscAI	CASTG	3 cut(s)	136, 471, 705
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	5 cut(s)	89, 373, 1001, 1108, 1214
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	5 cut(s)	558, 575, 1137, 1182, 1212
TspRI	CASTG	3 cut(s)	136, 471, 705
VpaK11BI	GGWCC	1 cut(s)	951
XagI	CCTNNNNNAGG	1 cut(s)	958
XceI	RCATGY	3 cut(s)	361, 365, 1100
XmnI	GAANNNNTTC	1 cut(s)	1173
XspI	CTAG	1 cut(s)	1218
Zsp2I	ATGCAT	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.