Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002469

Physical Location & Seq

Genomic Coordinates Reverse (-)

10505604 .. 10507782

Gene Structure 2179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0133900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGGAACAGCCCTTCTCTCAGTCCAAGCACCTCATCACATCCCTCTCTCTCAATTCCATTACACCAACACTACCAAGTCATGGAGGAGCTTCTCTCAGACCTACCCATTAGAACCCAAGTCTACCATCCTTCTCTGCTCAACCTCTTCAGCTTCAGTTGTAGAAGACACTGCTTCTCCTCCACCTGATGATTCACTTGCTGCCAAATCAGAATCCCCCATCAAAGAGCTTCCCCTCAGTGCTTGCAAGTCCTGTGGAAGAGAAGAAGTGGAGAAGGGATGCAATGGTGAAGGAAGGATTCAAGGTGGAATTGCAACATTTCCAGGATTTGGTTGGTGGCCCATAAAGGCTTACAGGCCATGCCCTGGATTTTTGGAATCAGGCGGCCGGTATAAGCGACAAGGACAAAGCCTGGATGAGGTTGCCTTTGGAAGAGGTGGGAAAGGAGAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.25

Weight (kDa)

7.63

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45610 AT5G45610
fragaria_vesca	FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380 FvH4_5g23380
malus_domestica	MD06G1024600.v1.1
prunus_persica	Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1 Prupe.5G025700_v2.0.a1
pyrus_communis	pycom06g01990
rosa_chinensis	RchiOBHm_Chr7g0212401
rosa_laevigata	RLG00000002892 RLG00000018896
rosa_multiflora	Rmu_sc0001911.1_g000056 Rmu_sc0007576.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246860
rosa_rugosa	Rorug07G0133800 Rorug07G0133900
rosa_samantha	Rh2DG427300 Rh7AG266600 Rh7BG260700 Rh7CG283500 Rh7DG273600
rosa_wichuraiana	Rw7G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	81, 329, 365
AccI	GTMKAC	1 cut(s)	122
AciI	CCGC	1 cut(s)	384
AcoI	YGGCCR	1 cut(s)	385
AcuI	CTGAAG	2 cut(s)	132, 138
AfiI	CCNNNNNNNGG	4 cut(s)	81, 329, 365, 418
AgsI	TTSAA	1 cut(s)	302
AjnI	CCWGG	3 cut(s)	322, 364, 411
AluBI	AGCT	3 cut(s)	90, 152, 229
AluI	AGCT	3 cut(s)	90, 152, 229
AoxI	GGCC	3 cut(s)	338, 356, 385
ApeKI	GCWGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	339
AsuHPI	GGTGA	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	2 cut(s)	134, 227
BciT130I	CCWGG	3 cut(s)	324, 366, 413
BfaI	CTAG	1 cut(s)	454
BisI	GCNGC	2 cut(s)	201, 385
BlsI	GCNGC	2 cut(s)	202, 386
Bme1390I	CCNGG	3 cut(s)	324, 366, 413
BmgT120I	GGNCC	1 cut(s)	339
BmrFI	CCNGG	3 cut(s)	324, 366, 413
BmsI	GCATC	1 cut(s)	269
BpiI	GAAGAC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	79, 111
BsaJI	CCNNGG	1 cut(s)	364
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bsc4I	CCNNNNNNNGG	4 cut(s)	81, 329, 365, 418
Bse118I	RCCGGY	1 cut(s)	387
Bse3DI	GCAATG	1 cut(s)	289
BseBI	CCWGG	3 cut(s)	324, 366, 413
BseDI	CCNNGG	1 cut(s)	364
BseGI	GGATG	4 cut(s)	39, 126, 284, 421
BseLI	CCNNNNNNNGG	4 cut(s)	81, 329, 365, 418
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	3 cut(s)	33, 110, 250
BseRI	GAGGAG	2 cut(s)	100, 168
BseX3I	CGGCCG	1 cut(s)	385
BseXI	GCAGC	1 cut(s)	187
Bsh1285I	CGRYCG	1 cut(s)	388
BshFI	GGCC	3 cut(s)	340, 358, 387
BsiEI	CGRYCG	1 cut(s)	388
BsiSI	CCGG	1 cut(s)	388
BslI	CCNNNNNNNGG	4 cut(s)	81, 329, 365, 418
BsnI	GGCC	3 cut(s)	340, 358, 387
BspACI	CCGC	1 cut(s)	384
BspANI	GGCC	3 cut(s)	340, 358, 387
BspCNI	CTCAG	3 cut(s)	32, 109, 249
BsrDI	GCAATG	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	387
BssAI	RCCGGY	1 cut(s)	387
BssECI	CCNNGG	1 cut(s)	364
Bst2UI	CCWGG	3 cut(s)	324, 366, 413
Bst6I	CTCTTC	3 cut(s)	151, 253, 427
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	3 cut(s)	19, 96, 236
BstENI	CCTNNNNNAGG	1 cut(s)	416
BstF5I	GGATG	4 cut(s)	39, 126, 284, 421
BstMCI	CGRYCG	1 cut(s)	388
BstNI	CCWGG	3 cut(s)	324, 366, 413
BstSCI	CCNGG	3 cut(s)	322, 364, 411
BstV1I	GCAGC	1 cut(s)	187
BstV2I	GAAGAC	1 cut(s)	171
BstZI	CGGCCG	1 cut(s)	385
BsuRI	GGCC	3 cut(s)	340, 358, 387
BtsCI	GGATG	4 cut(s)	39, 126, 284, 421
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	2 cut(s)	168, 244
Cac8I	GCNNGC	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	387
Cfr13I	GGNCC	1 cut(s)	339
CspCI	CAANNNNNGTGG	2 cut(s)	235, 270
CviAII	CATG	2 cut(s)	81, 360
CviJI	RGCY	9 cut(s)	11, 90, 152, 229, 340, 350, 358, 387, 411
CviKI_1	RGCY	9 cut(s)	11, 90, 152, 229, 340, 350, 358, 387, 411
DdeI	CTNAG	3 cut(s)	19, 96, 236
EaeI	YGGCCR	1 cut(s)	385
EagI	CGGCCG	1 cut(s)	385
Eam1104I	CTCTTC	3 cut(s)	151, 253, 427
EarI	CTCTTC	3 cut(s)	151, 253, 427
EclXI	CGGCCG	1 cut(s)	385
Eco52I	CGGCCG	1 cut(s)	385
Eco57I	CTGAAG	2 cut(s)	132, 138
EcoNI	CCTNNNNNAGG	1 cut(s)	416
EcoRII	CCWGG	3 cut(s)	322, 364, 411
FaeI	CATG	2 cut(s)	84, 363
FaiI	YATR	4 cut(s)	82, 344, 361, 393
FatI	CATG	2 cut(s)	80, 359
FblI	GTMKAC	1 cut(s)	122
Fnu4HI	GCNGC	2 cut(s)	201, 385
FokI	GGATG	4 cut(s)	26, 113, 291, 428
Fsp4HI	GCNGC	2 cut(s)	201, 385
FspBI	CTAG	1 cut(s)	454
GluI	GCNGC	2 cut(s)	201, 385
HaeIII	GGCC	3 cut(s)	340, 358, 387
HapII	CCGG	1 cut(s)	388
Hin1II	CATG	2 cut(s)	84, 363
HinfI	GANTC	4 cut(s)	191, 212, 298, 377
HpaII	CCGG	1 cut(s)	388
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	2 cut(s)	99, 211
Hpy8I	GTNNAC	1 cut(s)	123
HpyAV	CCTTC	5 cut(s)	23, 140, 268, 284, 288
HpyCH4V	TGCA	3 cut(s)	246, 282, 314
HpyF3I	CTNAG	3 cut(s)	19, 96, 236
Hsp92II	CATG	2 cut(s)	84, 363
LmnI	GCTCC	1 cut(s)	87
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	1 cut(s)	269
MaeI	CTAG	1 cut(s)	454
MboII	GAAGA	5 cut(s)	138, 176, 270, 275, 444
MluCI	AATT	2 cut(s)	53, 309
MnlI	CCTC	8 cut(s)	42, 54, 78, 154, 189, 245, 412, 428
MspI	CCGG	1 cut(s)	388
MspR9I	CCNGG	3 cut(s)	324, 366, 413
MvaI	CCWGG	3 cut(s)	324, 366, 413
NlaIII	CATG	2 cut(s)	84, 363
PfeI	GAWTC	4 cut(s)	191, 212, 298, 377
PflMI	CCANNNNNTGG	3 cut(s)	81, 329, 365
PfoI	TCCNGGA	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	202, 386
Psp6I	CCWGG	3 cut(s)	322, 364, 411
PspGI	CCWGG	3 cut(s)	322, 364, 411
PspPI	GGNCC	1 cut(s)	339
SatI	GCNGC	2 cut(s)	201, 385
Sau96I	GGNCC	1 cut(s)	339
ScrFI	CCNGG	3 cut(s)	324, 366, 413
SfaNI	GCATC	1 cut(s)	269
Sse9I	AATT	2 cut(s)	53, 309
SsiI	CCGC	1 cut(s)	384
SspMI	CTAG	1 cut(s)	454
StyD4I	CCNGG	3 cut(s)	322, 364, 411
TasI	AATT	2 cut(s)	53, 309
TauI	GCSGC	1 cut(s)	387
TfiI	GAWTC	4 cut(s)	191, 212, 298, 377
TscAI	CASTG	2 cut(s)	175, 244
TseI	GCWGC	1 cut(s)	200
TspRI	CASTG	2 cut(s)	175, 244
Van91I	CCANNNNNTGG	3 cut(s)	81, 329, 365
XagI	CCTNNNNNAGG	1 cut(s)	416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	330
XmiI	GTMKAC	1 cut(s)	122
XspI	CTAG	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.