MD06G1032200.v1.1

Plant intracellular Ras-group-related LRR protein 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0016857
Physical Location & Seq
Reverse (-)
3863091 .. 3865867
2777 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1032200.v1.1.491

Sequence Viewer

Length: 1596 bp
ATGGGTGCCAAACCCAAGCTCAAGGAAGAACCACCATCCCCGGCCCTTGTAGAAACAGTTGAAGAAATCATGAAGCTCTACAAGTCGCTGCCACCGAGGCCCTCCATTGAAGAGGTCGAAGCAGCCTTGTCCGTCCTCGAAACAGTGGCCAACGAGGAGCAAGCGAAGCTCGAGGAGATATCGAAGCTAGAGAAACCGAAAGACGTTCCCCAAGAACTCTTCGATGTGTTGCAGAAGTCGAAGAAGACCGTGGTTTTGTTTCAGAGCCACGAGCAGAGGAAGGAGGCTTCATATGTGGTTGAGACTGACAAGTTGTTTCACACCTTTGATGATCTTATCCAGAGAGCTTCCGGGTTGGTTTCGGGTGATGTTCCGAGTCAGAATCATGTTGATTTCAGTGACCCGGTTGAGAAAGTTGGGAGGGAAGCTGTGATCCGTGATCAAAGTTTGGTGAAGAAGAAGAAGATGGGATATGAAGAAGATGAGAAAGATGGCTTTAAGGGTTTGGTGAGCAGTGCTTCCACTCTTTCTTCAGGTGTCGTGGACTCTGGAAAGTTAAGCCTAATGAAGGTGGCAGCTGTGATTGAAAACACCGCTAAAAGTGGGGAAGTAGTTCTTGATCTTGGAGGAAAGTTAGTAGATCAAATGGAGTGGCTTCCTGTATCCCTTGGGAAGTTATCAGATGTAACCGAATTGAACTTGTCTGAAAACCGAATCATGGCTCTTCCGCCCACGATCGGTGGCCTTAAAGCCTTGACAAAGCTTGACATTCACTCGAACCAGCTGGTAAACCTTCCAGAGTCATTTGGTGAGTTGAGCAATCTCACTGATCTTGACCTCCATGCAAACATGTTGAAATCTCTGCCGGCCTCTTTCGGGAACTTGATTAACCTCCTTAACCTCGATTTGAGTTCAAACAAGTTCACCCATTTGCCCGATGTAATTGGGAAATTGGCCAGTTTAAAGCTACTGAATGTTGAAACAAATGAGCTTCAGGAATTGCCTTACACAATTGGATCCTGCACATCAATTGTTGAGCTACATTTGGATTTCAACGAGCTAAGAGCTCTTCCGGAGGCAGTTGGAAAGATCGAAAGCTTAGAGGTTCTTACACTTCACTATAACAGAATCAAAGCGTTGCCAACAACAATTGGTAATCTTAACAACCTCAAGGAGCTTGACATTAGCTTCAACGAACTCGAATCCATACCCGAAAACTTGTGCTTTGCAGTGAACCTCAAGAAGCTGAATGTGGCAAACAACTTTGCAGACTTGAGAGCCTTGCCGCGGTCAATTGGTAATCTTGAGTTGCTTGAAGAGTTGGATATCAGTGATGATCAGATCAGAACTTTACCAAACTCTTTCAAAATGTTGTCGAAACTGAGAGTTTTTCGCGCCGATGAGACACCTATGGAAGTTCCACCAAGAGAAGTGATAAAACTGGGTGCCCAGGCTGTTGTGAAGTACATGGCAGATCTTGAGGCCAAGAGAGAGAGTGCTGCTTTTCAAGCATTGAAGCAGAAGAATAAGAAGGGATTTTGGTTCTGGTTTTGCTCAAAACTTTGCTCCATTGGTGGTAATTCTGCCAACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000122 GO:0000578 GO:0000902 GO:0001654 GO:0001655 GO:0001700 GO:0001708 GO:0001736 GO:0001737 GO:0001738 GO:0001745 GO:0001751 GO:0001752 GO:0001754 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002164 GO:0002165 GO:0002168 GO:0003002 GO:0003006 GO:0003008 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005918 GO:0005923 GO:0005938 GO:0006355 GO:0006357 GO:0007028 GO:0007043 GO:0007154 GO:0007163 GO:0007164 GO:0007165 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007308 GO:0007309 GO:0007314 GO:0007315 GO:0007318 GO:0007350 GO:0007351 GO:0007389 GO:0007391 GO:0007399 GO:0007423 GO:0007444 GO:0007464 GO:0007472 GO:0007476 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007635 GO:0008104 GO:0008150 GO:0008283 GO:0008285 GO:0008358 GO:0008544 GO:0008593 GO:0008595 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009790 GO:0009791 GO:0009792 GO:0009798 GO:0009880 GO:0009886 GO:0009887 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009913 GO:0009948 GO:0009952 GO:0009966 GO:0009987 GO:0009994 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0016020 GO:0016043 GO:0016323 GO:0016327 GO:0016328 GO:0016331 GO:0016332 GO:0016333 GO:0016334 GO:0016335 GO:0016336 GO:0019219 GO:0019222 GO:0019953 GO:0019991 GO:0021700 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0030010 GO:0030011 GO:0030030 GO:0030054 GO:0030100 GO:0030154 GO:0030182 GO:0030707 GO:0030714 GO:0030855 GO:0030859 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031594 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0032989 GO:0033036 GO:0034329 GO:0034330 GO:0034332 GO:0034333 GO:0035088 GO:0035089 GO:0035090 GO:0035107 GO:0035114 GO:0035120 GO:0035220 GO:0035239 GO:0035282 GO:0035295 GO:0035315 GO:0035316 GO:0035317 GO:0040008 GO:0042048 GO:0042058 GO:0042067 GO:0042127 GO:0042221 GO:0042706 GO:0043296 GO:0043297 GO:0044085 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0045165 GO:0045169 GO:0045175 GO:0045178 GO:0045186 GO:0045197 GO:0045198 GO:0045199 GO:0045202 GO:0045216 GO:0045570 GO:0045571 GO:0045892 GO:0045926 GO:0045934 GO:0046425 GO:0046530 GO:0046552 GO:0046620 GO:0046621 GO:0048056 GO:0048468 GO:0048469 GO:0048477 GO:0048513 GO:0048519 GO:0048523 GO:0048563 GO:0048569 GO:0048583 GO:0048592 GO:0048598 GO:0048599 GO:0048609 GO:0048638 GO:0048640 GO:0048663 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048863 GO:0048869 GO:0050678 GO:0050680 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050877 GO:0050890 GO:0050896 GO:0051049 GO:0051093 GO:0051128 GO:0051171 GO:0051172 GO:0051179 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0060429 GO:0060562 GO:0060581 GO:0060627 GO:0061162 GO:0061245 GO:0061326 GO:0061339 GO:0065007 GO:0065008 GO:0070160 GO:0071840 GO:0071944 GO:0072001 GO:0072002 GO:0072089 GO:0080090 GO:0090162 GO:0090596 GO:0097574 GO:0098590 GO:0099568 GO:0120036 GO:1901184 GO:1902531 GO:1902679 GO:1903506 GO:1903507 GO:1904892 GO:1990794 GO:2000026 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8

Protein Analysis

532

Amino Acids

58.76

Weight (kDa)

5.21

Isoelectric Point (pI)

35.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 220 - 303 9e-10 Leucine-rich repeat region
LRR_8 PF13855 229 - 285 1.2e-08 Leucine rich repeat
LRR_8 PF13855 273 - 331 7.3e-07 Leucine rich repeat
LRR_14 PF23598 292 - 408 2.4e-16 Leucine-rich repeat region
LRR_8 PF13855 344 - 400 6.9e-08 Leucine rich repeat
LRR_8 PF13855 366 - 421 1.1e-06 Leucine rich repeat
LRR_4 PF12799 366 - 404 3.5e-06 Leucine Rich repeats (2 copies)
LRR_14 PF23598 407 - 474 1.6e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016857)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g21720
malus_domestica MD06G1032200.v1.1
prunus_persica Prupe.1G323800_v2.0.a1 Prupe.5G039900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209221
rosa_laevigata RLG00000003156
rosa_multiflora Rmu_sc0001701.1_g000009
rosa_roxburghii Rroxscaffold_3G00249620
rosa_rugosa Rorug07G0110400
rosa_samantha Rh7AG244400 Rh7BG239700 Rh7CG259900 Rh7DG251200
rosa_wichuraiana Rw7G020730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 5, 1445
AccII CGCG 2 cut(s) 1288, 1395
AccIII TCCGGA 1 cut(s) 1072
AciI CCGC 4 cut(s) 594, 728, 1286, 1288
AclWI GGATC 3 cut(s) 427, 1011, 1024
AcoI YGGCCR 2 cut(s) 147, 954
AcuI CTGAAG 2 cut(s) 516, 977
AfaI GTAC 1 cut(s) 1466
AfiI CCNNNNNNNGG 5 cut(s) 568, 718, 737, 876, 1287
AflIII ACRYGT 1 cut(s) 849
AjnI CCWGG 1 cut(s) 1449
Alw21I GWGCWC 1 cut(s) 1069
Alw26I GTCTC 2 cut(s) 296, 1397
AlwI GGATC 3 cut(s) 427, 1011, 1024
Ama87I CYCGRG 1 cut(s) 170
Aor13HI TCCGGA 1 cut(s) 1072
AoxI GGCC 7 cut(s) 42, 98, 147, 742, 867, 954, 1482
ApeKI GCWGC 4 cut(s) 88, 122, 575, 1499
ArsI GACNNNNNNTTYG 2 cut(s) 238, 270
Asp700I GAANNNNTTC 1 cut(s) 612
AspLEI GCGC 1 cut(s) 1397
AspS9I GGNCC 2 cut(s) 43, 99
AsuC2I CCSGG 3 cut(s) 41, 352, 404
AsuHPI GGTGA 5 cut(s) 377, 463, 520, 821, 916
AvaI CYCGRG 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 1450
BalI TGGCCA 2 cut(s) 149, 956
BamHI GGATCC 1 cut(s) 1016
BanI GGYRCC 2 cut(s) 5, 1445
BanII GRGCYC 1 cut(s) 1069
BauI CACGAG 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 1069
BbvI GCAGC 4 cut(s) 75, 134, 587, 1486
BccI CCATC 3 cut(s) 43, 460, 485
BciT130I CCWGG 1 cut(s) 1451
BciVI GTATCC 1 cut(s) 673
BclI TGATCA 2 cut(s) 439, 1336
BcnI CCSGG 3 cut(s) 41, 352, 404
BcoDI GTCTC 2 cut(s) 296, 1397
BfaI CTAG 2 cut(s) 188, 1594
BfuI GTATCC 1 cut(s) 673
BglI GCCNNNNNGGC 1 cut(s) 97
BglII AGATCT 1 cut(s) 1474
BisI GCNGC 5 cut(s) 89, 123, 576, 1286, 1500
BlsI GCNGC 5 cut(s) 90, 124, 577, 1287, 1501
Bme1390I CCNGG 4 cut(s) 41, 352, 404, 1451
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 2 cut(s) 43, 99
BmiI GGNNCC 3 cut(s) 7, 1018, 1447
BmrFI CCNGG 4 cut(s) 41, 352, 404, 1451
BmrI ACTGGG 1 cut(s) 1451
BmuI ACTGGG 1 cut(s) 1451
BpiI GAAGAC 1 cut(s) 251
BpuEI CTTGAG 6 cut(s) 5, 1154, 1223, 1294, 1325, 1499
BpuMI CCSGG 3 cut(s) 41, 352, 404
BsaJI CCNNGG 6 cut(s) 39, 95, 249, 667, 1286, 1449
BsaWI WCCGGW 1 cut(s) 1072
Bsc4I CCNNNNNNNGG 5 cut(s) 568, 718, 737, 876, 1287
Bse118I RCCGGY 1 cut(s) 865
Bse1I ACTGG 2 cut(s) 957, 1446
BseAI TCCGGA 1 cut(s) 1072
BseBI CCWGG 1 cut(s) 1451
BseDI CCNNGG 6 cut(s) 39, 95, 249, 667, 1286, 1449
BseGI GGATG 1 cut(s) 35
BseLI CCNNNNNNNGG 5 cut(s) 568, 718, 737, 876, 1287
BseMII CTCAG 1 cut(s) 1373
BseNI ACTGG 2 cut(s) 957, 1446
BseRI GAGGAG 2 cut(s) 170, 188
BseSI GKGCMC 1 cut(s) 1450
BseXI GCAGC 4 cut(s) 75, 134, 587, 1486
BsgI GTGCAG 1 cut(s) 1006
Bsh1236I CGCG 2 cut(s) 1288, 1395
Bsh1285I CGRYCG 1 cut(s) 738
BshFI GGCC 7 cut(s) 44, 100, 149, 744, 869, 956, 1484
BshNI GGYRCC 2 cut(s) 5, 1445
BsiEI CGRYCG 1 cut(s) 738
BsiHKAI GWGCWC 1 cut(s) 1069
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 5 cut(s) 41, 351, 404, 866, 1073
BslI CCNNNNNNNGG 5 cut(s) 568, 718, 737, 876, 1287
BsmAI GTCTC 2 cut(s) 296, 1397
BsnI GGCC 7 cut(s) 44, 100, 149, 744, 869, 956, 1484
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 1069, 1450
Bsp13I TCCGGA 1 cut(s) 1072
BspACI CCGC 4 cut(s) 594, 728, 1286, 1288
BspANI GGCC 7 cut(s) 44, 100, 149, 744, 869, 956, 1484
BspCNI CTCAG 1 cut(s) 1374
BspEI TCCGGA 1 cut(s) 1072
BspFNI CGCG 2 cut(s) 1288, 1395
BspHI TCATGA 1 cut(s) 69
BspLI GGNNCC 3 cut(s) 7, 1018, 1447
BspPI GGATC 3 cut(s) 427, 1011, 1024
BspQI GCTCTTC 2 cut(s) 729, 1074
BspT107I GGYRCC 2 cut(s) 5, 1445
BsrFI RCCGGY 1 cut(s) 865
BsrI ACTGG 2 cut(s) 957, 1446
BssAI RCCGGY 1 cut(s) 865
BssECI CCNNGG 6 cut(s) 39, 95, 249, 667, 1286, 1449
BssSI CACGAG 1 cut(s) 269
BssT1I CCWWGG 1 cut(s) 667
Bst2BI CACGAG 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 1451
Bst4CI ACNGT 3 cut(s) 58, 145, 250
Bst6I CTCTTC 5 cut(s) 105, 224, 729, 1074, 1311
BstC8I GCNNGC 2 cut(s) 162, 867
BstDEI CTNAG 3 cut(s) 1061, 1099, 1382
BstDSI CCRYGG 2 cut(s) 249, 1286
BstENI CCTNNNNNAGG 1 cut(s) 566
BstF5I GGATG 1 cut(s) 35
BstFNI CGCG 2 cut(s) 1288, 1395
BstHHI GCGC 1 cut(s) 1397
BstMAI GTCTC 2 cut(s) 296, 1397
BstMCI CGRYCG 1 cut(s) 738
BstMWI GCNNNNNNNGC 3 cut(s) 97, 166, 1508
BstNI CCWGG 1 cut(s) 1451
BstNSI RCATGY 1 cut(s) 853
BstSCI CCNGG 4 cut(s) 39, 350, 402, 1449
BstSLI GKGCMC 1 cut(s) 1450
BstUI CGCG 2 cut(s) 1288, 1395
BstV1I GCAGC 4 cut(s) 75, 134, 587, 1486
BstV2I GAAGAC 1 cut(s) 251
BstX2I RGATCY 2 cut(s) 1016, 1474
BstYI RGATCY 2 cut(s) 1016, 1474
BsuI GTATCC 1 cut(s) 673
BsuRI GGCC 7 cut(s) 44, 100, 149, 744, 869, 956, 1484
BtgI CCRYGG 2 cut(s) 249, 1286
BtsCI GGATG 1 cut(s) 35
BtsI GCAGTG 2 cut(s) 520, 1236
BtsIMutI CAGTG 6 cut(s) 150, 403, 520, 825, 1236, 1336
Cac8I GCNNGC 2 cut(s) 162, 867
CciI TCATGA 1 cut(s) 69
CfoI GCGC 1 cut(s) 1397
Cfr10I RCCGGY 1 cut(s) 865
Cfr13I GGNCC 2 cut(s) 43, 99
Cfr42I CCGCGG 1 cut(s) 1289
Csp6I GTAC 1 cut(s) 1465
CspCI CAANNNNNGTGG 2 cut(s) 632, 667
CviAII CATG 6 cut(s) 70, 386, 718, 842, 850, 1468
CviQI GTAC 1 cut(s) 1465
DdeI CTNAG 3 cut(s) 1061, 1099, 1382
DraI TTTAAA 1 cut(s) 963
EaeI YGGCCR 2 cut(s) 147, 954
Eam1104I CTCTTC 5 cut(s) 105, 224, 729, 1074, 1311
EarI CTCTTC 5 cut(s) 105, 224, 729, 1074, 1311
EciI GGCGGA 1 cut(s) 717
Ecl136II GAGCTC 1 cut(s) 1067
Eco130I CCWWGG 1 cut(s) 667
Eco24I GRGCYC 1 cut(s) 1069
Eco32I GATATC 2 cut(s) 180, 1327
Eco53kI GAGCTC 1 cut(s) 1067
Eco57I CTGAAG 2 cut(s) 516, 977
Eco88I CYCGRG 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 1067
EcoNI CCTNNNNNAGG 1 cut(s) 566
EcoO109I RGGNCCY 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 1449
EcoRV GATATC 2 cut(s) 180, 1327
EcoT14I CCWWGG 1 cut(s) 667
EcoT38I GRGCYC 1 cut(s) 1069
ErhI CCWWGG 1 cut(s) 667
FaeI CATG 6 cut(s) 73, 389, 721, 845, 853, 1471
FalI AAGNNNNNCTT 2 cut(s) 600, 632
FatI CATG 6 cut(s) 69, 385, 717, 841, 849, 1467
FauNDI CATATG 1 cut(s) 292
FbaI TGATCA 2 cut(s) 439, 1336
Fnu4HI GCNGC 5 cut(s) 89, 123, 576, 1286, 1500
FokI GGATG 1 cut(s) 22
FriOI GRGCYC 1 cut(s) 1069
Fsp4HI GCNGC 5 cut(s) 89, 123, 576, 1286, 1500
FspBI CTAG 2 cut(s) 188, 1594
GlaI GCGC 1 cut(s) 1396
GluI GCNGC 5 cut(s) 89, 123, 576, 1286, 1500
HaeIII GGCC 7 cut(s) 44, 100, 149, 744, 869, 956, 1484
HapII CCGG 5 cut(s) 41, 351, 404, 866, 1073
HhaI GCGC 1 cut(s) 1397
Hin1II CATG 6 cut(s) 73, 389, 721, 845, 853, 1471
Hin6I GCGC 1 cut(s) 1395
HinP1I GCGC 1 cut(s) 1395
HindIII AAGCTT 2 cut(s) 761, 1096
HinfI GANTC 7 cut(s) 376, 382, 545, 714, 800, 1128, 1202
HpaII CCGG 5 cut(s) 41, 351, 404, 866, 1073
HphI GGTGA 5 cut(s) 377, 463, 520, 821, 916
Hpy166II GTNNAC 4 cut(s) 544, 790, 924, 1234
Hpy188I TCNGA 7 cut(s) 264, 375, 381, 682, 706, 1341, 1346
Hpy8I GTNNAC 4 cut(s) 544, 790, 924, 1234
HpyAV CCTTC 4 cut(s) 274, 562, 803, 1525
HpyCH4III ACNGT 3 cut(s) 58, 145, 250
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 5 cut(s) 232, 845, 1023, 1229, 1268
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 166, 1508
HpyF3I CTNAG 3 cut(s) 1061, 1099, 1382
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 6 cut(s) 73, 389, 721, 845, 853, 1471
HspAI GCGC 1 cut(s) 1395
Kpn2I TCCGGA 1 cut(s) 1072
KroI GCCGGC 1 cut(s) 865
KroNI GCCGGC 1 cut(s) 867
Ksp22I TGATCA 2 cut(s) 439, 1336
KspI CCGCGG 1 cut(s) 1289
LguI GCTCTTC 2 cut(s) 729, 1074
LmnI GCTCC 3 cut(s) 157, 1174, 1571
Lsp1109I GCAGC 4 cut(s) 75, 134, 587, 1486
MaeI CTAG 2 cut(s) 188, 1594
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 2 cut(s) 398, 685
MfeI CAATTG 4 cut(s) 1011, 1029, 1149, 1293
MflI RGATCY 2 cut(s) 1016, 1474
MhlI GDGCHC 2 cut(s) 1069, 1450
MlsI TGGCCA 2 cut(s) 149, 956
MluCI AATT 9 cut(s) 692, 942, 950, 998, 1011, 1029, 1149, 1293, 1579
MluNI TGGCCA 2 cut(s) 149, 956
MlyI GAGTC 3 cut(s) 385, 539, 809
MmeI TCCRAC 2 cut(s) 1063, 1302
Mox20I TGGCCA 2 cut(s) 149, 956
MroI TCCGGA 1 cut(s) 1072
MroNI GCCGGC 1 cut(s) 865
MroXI GAANNNNTTC 1 cut(s) 612
MscI TGGCCA 2 cut(s) 149, 956
MseI TTAA 7 cut(s) 498, 557, 747, 888, 897, 962, 1161
Msp20I TGGCCA 2 cut(s) 149, 956
MspA1I CMGCKG 3 cut(s) 578, 784, 1288
MspI CCGG 5 cut(s) 41, 351, 404, 866, 1073
MspR9I CCNGG 4 cut(s) 41, 352, 404, 1451
MunI CAATTG 4 cut(s) 1011, 1029, 1149, 1293
MvaI CCWGG 1 cut(s) 1451
MvnI CGCG 2 cut(s) 1288, 1395
MwoI GCNNNNNNNGC 3 cut(s) 97, 166, 1508
NaeI GCCGGC 1 cut(s) 867
NciI CCSGG 3 cut(s) 41, 352, 404
NdeI CATATG 1 cut(s) 292
NgoMIV GCCGGC 1 cut(s) 865
NlaIII CATG 6 cut(s) 73, 389, 721, 845, 853, 1471
NlaIV GGNNCC 3 cut(s) 7, 1018, 1447
NmuCI GTSAC 1 cut(s) 398
NspI RCATGY 1 cut(s) 853
PaeR7I CTCGAG 1 cut(s) 170
PagI TCATGA 1 cut(s) 69
PciI ACATGT 1 cut(s) 849
PciSI GCTCTTC 2 cut(s) 729, 1074
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PdiI GCCGGC 1 cut(s) 867
PdmI GAANNNNTTC 1 cut(s) 612
PfeI GAWTC 4 cut(s) 382, 714, 1128, 1202
PkrI GCNGC 5 cut(s) 90, 124, 577, 1287, 1501
Ple19I CGATCG 1 cut(s) 738
PleI GAGTC 3 cut(s) 384, 539, 808
PpsI GAGTC 3 cut(s) 384, 539, 808
PscI ACATGT 1 cut(s) 849
Psp124BI GAGCTC 1 cut(s) 1069
Psp6I CCWGG 1 cut(s) 1449
PspGI CCWGG 1 cut(s) 1449
PspN4I GGNNCC 3 cut(s) 7, 1018, 1447
PspPI GGNCC 2 cut(s) 43, 99
PspXI VCTCGAGB 1 cut(s) 170
PsuI RGATCY 2 cut(s) 1016, 1474
PvuI CGATCG 1 cut(s) 738
PvuII CAGCTG 2 cut(s) 578, 784
RsaI GTAC 1 cut(s) 1466
RsaNI GTAC 1 cut(s) 1465
SacI GAGCTC 1 cut(s) 1069
SacII CCGCGG 1 cut(s) 1289
SapI GCTCTTC 2 cut(s) 729, 1074
SaqAI TTAA 7 cut(s) 498, 557, 747, 888, 897, 962, 1161
SatI GCNGC 5 cut(s) 89, 123, 576, 1286, 1500
Sau96I GGNCC 2 cut(s) 43, 99
SchI GAGTC 3 cut(s) 385, 539, 809
ScrFI CCNGG 4 cut(s) 41, 352, 404, 1451
SduI GDGCHC 2 cut(s) 1069, 1450
Sfr274I CTCGAG 1 cut(s) 170
Sfr303I CCGCGG 1 cut(s) 1289
SgrBI CCGCGG 1 cut(s) 1289
SlaI CTCGAG 1 cut(s) 170
SmlI CTYRAG 7 cut(s) 20, 170, 1169, 1238, 1273, 1304, 1478
SmoI CTYRAG 7 cut(s) 20, 170, 1169, 1238, 1273, 1304, 1478
Sse9I AATT 9 cut(s) 692, 942, 950, 998, 1011, 1029, 1149, 1293, 1579
SsiI CCGC 4 cut(s) 594, 728, 1286, 1288
SspMI CTAG 2 cut(s) 188, 1594
SstI GAGCTC 1 cut(s) 1069
StyD4I CCNGG 4 cut(s) 39, 350, 402, 1449
StyI CCWWGG 1 cut(s) 667
TaaI ACNGT 3 cut(s) 58, 145, 250
TaiI ACGT 1 cut(s) 207
TasI AATT 9 cut(s) 692, 942, 950, 998, 1011, 1029, 1149, 1293, 1579
TatI WGTACW 1 cut(s) 1464
TauI GCSGC 1 cut(s) 1288
TfiI GAWTC 4 cut(s) 382, 714, 1128, 1202
Tru1I TTAA 7 cut(s) 498, 557, 747, 888, 897, 962, 1161
Tru9I TTAA 7 cut(s) 498, 557, 747, 888, 897, 962, 1161
TscAI CASTG 6 cut(s) 150, 403, 520, 832, 1236, 1336
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 4 cut(s) 88, 122, 575, 1499
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 4 cut(s) 86, 279, 489, 581
TspGWI ACGGA 2 cut(s) 121, 425
TspRI CASTG 6 cut(s) 150, 403, 520, 832, 1236, 1336
XagI CCTNNNNNAGG 1 cut(s) 566
XceI RCATGY 1 cut(s) 853
XhoI CTCGAG 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 612
XspI CTAG 2 cut(s) 188, 1594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.