Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0008758

Physical Location & Seq

Genomic Coordinates Reverse (-)

5660689 .. 5670735

Gene Structure 10047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1043200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2682 bp

ATGGCGGAATCGGTGGAGCTTCCCACTCGCCTCGGCATCCTTCCTTTCCGAAACAAGGTCCTCTTACCCGGCGCCATCATTCGAATTCGCTGCACATCCCCCAGCAGTGTCAAATTGGTGGAGCAAGAGTTATGGCAGCGCGAAGAGAAGGGGTTAATTGGTATTCTTCCCGTTCGAGATGCTGCCGAGGCTGCAACAGTGGCCCCTGTGTTGTCTCAAGGTGTGGGAAGTGATTCTGGTGAACGAAGCTCTAGAGTTCAAGTTGGTACTTCCGATTCTCACAGGCCAGATGGAAAAAATCAGCAGGAAGTTATTCACTGGCATACAAGGGGAGTTGCTGCACGGGCTTTACATCTCTCAAGAGGAGTTGAGAAGCCAAGTGGGAGGGTTACGTATGTAGTTGTCCTTGAAGGCTTGTGTAGATTCAACGTCCAGGAACTTAGCACAAGGGGAACATATTATACTGCACGAATATCTCCACTTGAAATGACAAAGTCTGAAATGGAGCAAGTGGAGCAAGATCCGGAGTTCATATCATTGTCTCGCCAATTCAAAGCAACTGCTACGGAGCTGATTTCTGTTCTTGAGCAGAAACAAAAGACTGGAGGAAGAACAAAAGTTCTTCTGGAGACAGTTCCGGTTCACAAGTTGGCAGATATATTTGTTGCTAGCTTTGAGATAAGTTTTGAGGAGCAACTGTGTATGTTGGATTCAGTTGATCTGAAAGTAAGACTTTCCAAAGCTACTGAGCTAGTTGACAGGCATTTGCAGTCTATCCATGTAGCAGAGAAGATTACTCAAAAAGTTGAGGGTCAATTATCAAAATCGCAGAAGGAGTTTCTTTTGCGCCAGCAGATGAGAGCTATAAAAGAGGAGCTTGGCGACAATGATGACGATGAAGACGATGTTGTTGCTCTGGAAAGAAAGATGCAAAGTTCAGGAATGCCTTCAAACATCTGGAAGCACGCACAGAGAGAGCTGAGGAGGCTGAAAAAGATGCAACCCCAACAACCTGGATATAATAGTTCACGTGTTTACCTAGAGCTTCTTGCTGATCTTCCCTGGCAGAAGGCCAGTGAAGAATATGAATTGGATTTAAGGGCTACAAAAGAGCGTCTTGACAGTGATCACTATGGTTTAACTAAGGTTAAACAGCGGATTATTGAATATCTGGCTGTTCGCAAGCTAAAACCAGATGCCAGAGGCCCAGTGTTGTGTTTTGTTGGCCCGCCTGGTGTTGGAAAAACATCTTTGGCGTCATCTATTGCTGCTGCTTTGGGCAGAAAATTTATACGCATATCCCTTGGTGGTGTAAAGGATGAAGCTGATATCCGAGGACACAGGAGGACATACATTGGAAGCATGCCGGGTAGGCTCATTGATGGATTAAAGAAAGTAGCTGTTTCCAACCCGGTCATGCTGCTAGATGAAATTGACAAGACAGGTTCTGATGTGCGCGGTGATCCAGCTTCAGCTCTACTGGAGGTTCTTGATCCTGAGCAAAATAAAACATTCAATGATCAGTATCCTTCCTATAGCTATTTGAATGTTCCCTTTGACCTTTCAAAGGTGATTTTTGTGGCAACTGCAAATAGGGTGCAGCCTATTCCCCCACCACTCTTGGACAGGATGGAAGTTATTGAGCTGCCTGGATATACACCTGAAGAAAAGCTGAAGATAGCCATGCACCATTTAATTCCCCGAGTTCTTGATCAGCATGGGTTGAATTCTGAGTTTCTTAGAATCCCAGAGGCCATGGTGAAACTTATCATTCAAGGGTACACTAGAGAGGCTGGTGTTCGGAATCTGGAGAGAAACTTAGCTGCCTTGGCTCGTGCAGCTGCAGTAAAAGTTGCAGAGCAAGAACAAGCTGTCCCTCTGAGCAAAGATGTACATTCGCTTGCTTCACCACTACTCGAAAACAGACTTGCTGATGGAGCTGAAGTGGAAATGGAGGTTATTCCGATGGGTGTGAATAAGCATGAGATATCAAGCACTTTCAAGATTGATTCGCCATTGGTTGTGGATGAGGATATGCTGGAGAAAGTATTAGGGCCTCCAAGATTTGATGACAAAGAAGCTGCAGAACGAGTTGCAACACCAGGTGTTTCTGTTGGGCTTGTTTGGACTGCTTTTGGTGGAGAGGTTCAATTTGTGGAGGCCACAGCAATGGGGGGAAAGGGTGAATTGCATCTCACTGGTCAACTTGGAGATGTTATCAAAGAATCAGCACAAATAGCATTGACATGGGTGAGAGGCAGGGCAAAGGATCTTAAGTTCGCAACAGCTGAGGCAGCCAATCTTTTGGAGGGTCGGGATGTTCATATACACTTTCCTGCTGGGGCTGTACCGAAGGATGGACCCTCTGCAGGTGTGACTCTGGTAACAGCACTGGTTTCATTGTTCTGTCAGAGAAGAGTAAGAGCAGATACAGCAATGACTGGAGAAATGACATTGAGGGGTCTCGTACTACCTGTTGGTGGTGTCAAGGACAAGGTATTGGCAGCCCACCGTTGTGGTATTACAAGAGTCATTCTTCCAGAGAGGAATCTGAAGGATTTAACTGATGTACCGTCAGCTGTTCTTTCCGGTCTTGAGATAATACTAGCAAAGCGAATGGAAGATGTGTTAGAGCAGGCTTTTGAAGGCGGATGTCCCTGGAGACAGCACTCAAAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005782 GO:0006139 GO:0006259 GO:0006508 GO:0006605 GO:0006625 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009791 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015919 GO:0016043 GO:0016485 GO:0016558 GO:0016560 GO:0017038 GO:0019538 GO:0022622 GO:0031907 GO:0031974 GO:0032042 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0040007 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043574 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046483 GO:0046907 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0090304 GO:0090696 GO:0099402 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA LON_substr_bdg Lon_C

Protein Analysis

894

Amino Acids

98.63

Weight (kDa)

6.62

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LON_substr_bdg	PF02190	11 - 254	4.3e-28	ATP-dependent protease La (LON) substrate-binding domain
AAA	PF00004	405 - 547	1.4e-25	ATPase family associated with various cellular activities (AAA)
AAA_5	PF07728	405 - 544	1.1e-08	AAA domain (dynein-related subfamily)
Lon_lid	PF22667	572 - 623	7.1e-18	Lon protease AAA+ ATPase lid domain
Lon_C	PF05362	675 - 881	1.1e-76	Lon protease (S16) C-terminal proteolytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47040
fragaria_vesca	FvH4_5g20910 FvH4_5g20910
malus_domestica	MD06G1043200.v1.1 MD16G1267600.v1.1
prunus_persica	Prupe.5G050100_v2.0.a1 Prupe.5G050100_v2.0.a1
pyrus_communis	pycom06g03620 pycom16g23700 pycom16g23710
rosa_chinensis	RchiOBHm_Chr7g0207901
rosa_laevigata	RLG00000003277
rosa_multiflora	Rmu_co8377115.1_g000001 Rmu_sc0006577.1_g000003
rosa_roxburghii	Rroxscaffold_3G00251060
rosa_rugosa	Rorug07G0100200 Rorug07G0100200
rosa_samantha	Rh7AG233500 Rh7BG229100 Rh7CG248800 Rh7DG239500
rosa_wichuraiana	Rw0G001300 Rw7G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2360
Acc36I	ACCTGC	1 cut(s)	2360
AccB1I	GGYRCC	1 cut(s)	71
AccII	CGCG	2 cut(s)	141, 1458
AccIII	TCCGGA	1 cut(s)	523
AciI	CCGC	5 cut(s)	5, 1156, 1229, 1458, 2649
AclWI	GGATC	4 cut(s)	515, 1457, 1487, 2277
AcsI	RAATTY	3 cut(s)	84, 1286, 1726
AcuI	CTGAAG	5 cut(s)	1455, 1683, 1694, 1962, 2573
AcvI	CACGTG	1 cut(s)	1031
AcyI	GRCGYC	2 cut(s)	72, 1256
AdeI	CACNNNGTG	1 cut(s)	2105
AfaI	GTAC	6 cut(s)	268, 1781, 1893, 2349, 2469, 2571
AfiI	CCNNNNNNNGG	6 cut(s)	55, 1238, 1567, 2357, 2369, 2480
AflII	CTTAAG	1 cut(s)	2273
AflIII	ACRYGT	1 cut(s)	1030
AjnI	CCWGG	7 cut(s)	432, 1012, 1061, 1231, 1648, 2101, 2657
AleI	CACNNNNGTG	1 cut(s)	2514
AloI	GAACNNNNNNTCC	4 cut(s)	1857, 1889, 2261, 2293
Alw26I	GTCTC	5 cut(s)	219, 546, 623, 2468, 2656
AlwI	GGATC	4 cut(s)	515, 1457, 1487, 2277
AlwNI	CAGNNNCTG	1 cut(s)	1448
Ama87I	CYCGRG	1 cut(s)	1701
Aor13HI	TCCGGA	1 cut(s)	523
AoxI	GGCC	8 cut(s)	201, 284, 1071, 1204, 1225, 1752, 2054, 2160
ApoI	RAATTY	3 cut(s)	84, 1286, 1726
Asp700I	GAANNNNTTC	3 cut(s)	232, 312, 946
AspLEI	GCGC	4 cut(s)	74, 141, 849, 1458
AspS9I	GGNCC	6 cut(s)	58, 202, 1205, 1226, 2054, 2360
AsuC2I	CCSGG	3 cut(s)	69, 1368, 1412
AsuHPI	GGTGA	7 cut(s)	251, 1472, 1582, 1771, 1899, 2195, 2263
AsuII	TTCGAA	1 cut(s)	82
AsuNHI	GCTAGC	1 cut(s)	668
AvaI	CYCGRG	1 cut(s)	1701
AvaII	GGWCC	2 cut(s)	58, 2360
BaeI	ACNNNNGTAYC	2 cut(s)	2553, 2586
BanI	GGYRCC	1 cut(s)	71
BauI	CACGAG	1 cut(s)	1833
BbrPI	CACGTG	1 cut(s)	1031
BbsI	GAAGAC	1 cut(s)	906
BbvCI	CCTCAGC	2 cut(s)	980, 2289
BccI	CCATC	7 cut(s)	83, 284, 1376, 1624, 1928, 1960, 2351
BcgI	CGANNNNNNTGC	4 cut(s)	72, 106, 893, 927
BciT130I	CCWGG	7 cut(s)	434, 1014, 1063, 1233, 1650, 2103, 2659
BciVI	GTATCC	1 cut(s)	1536
BclI	TGATCA	3 cut(s)	1126, 1519, 1711
BcnI	CCSGG	3 cut(s)	69, 1368, 1412
BcoDI	GTCTC	5 cut(s)	219, 546, 623, 2468, 2656
BfaI	CTAG	7 cut(s)	252, 669, 752, 1040, 1424, 1785, 2606
BfmI	CTRYAG	4 cut(s)	1534, 1842, 2082, 2367
BfoI	RGCGCY	1 cut(s)	75
BfrI	CTTAAG	1 cut(s)	2273
BfuAI	ACCTGC	1 cut(s)	2360
BfuI	GTATCC	1 cut(s)	1536
BglI	GCCNNNNNGGC	1 cut(s)	1372
Bme18I	GGWCC	2 cut(s)	58, 2360
BmeT110I	CYCGRG	1 cut(s)	1701
BmgT120I	GGNCC	6 cut(s)	58, 202, 1205, 1226, 2054, 2360
BmiI	GGNNCC	3 cut(s)	73, 204, 2362
BmrI	ACTGGG	1 cut(s)	1202
BmsI	GCATC	6 cut(s)	45, 169, 918, 987, 1186, 2200
BmtI	GCTAGC	1 cut(s)	672
BmuI	ACTGGG	1 cut(s)	1202
BpiI	GAAGAC	1 cut(s)	906
BpmI	CTGGAG	7 cut(s)	624, 647, 1502, 1829, 2060, 2463, 2680
Bpu10I	CCTNAGC	3 cut(s)	980, 1497, 2289
Bpu14I	TTCGAA	1 cut(s)	82
BpuEI	CTTGAG	4 cut(s)	201, 343, 605, 2615
BpuMI	CCSGG	3 cut(s)	69, 1368, 1412
BsaAI	YACGTR	2 cut(s)	393, 1031
BsaBI	GATNNNNATC	1 cut(s)	1524
BsaHI	GRCGYC	2 cut(s)	72, 1256
BsaI	GGTCTC	1 cut(s)	2468
BsaJI	CCNNGG	8 cut(s)	31, 186, 1061, 1303, 1333, 1755, 1827, 2657
BsaWI	WCCGGW	3 cut(s)	523, 637, 2588
BsaXI	ACNNNNNCTCC	6 cut(s)	113, 143, 683, 713, 1929, 1959
Bsc4I	CCNNNNNNNGG	6 cut(s)	55, 1238, 1567, 2357, 2369, 2480
Bse1I	ACTGG	8 cut(s)	323, 607, 1074, 1208, 1485, 2203, 2397, 2446
Bse3DI	GCAATG	2 cut(s)	2175, 2442
Bse8I	GATNNNNATC	1 cut(s)	1524
BseAI	TCCGGA	1 cut(s)	523
BseBI	CCWGG	7 cut(s)	434, 1014, 1063, 1233, 1650, 2103, 2659
BseDI	CCNNGG	8 cut(s)	31, 186, 1061, 1303, 1333, 1755, 1827, 2657
BseGI	GGATG	8 cut(s)	36, 95, 1324, 1635, 2032, 2323, 2362, 2657
BseJI	GATNNNNATC	1 cut(s)	1524
BseLI	CCNNNNNNNGG	6 cut(s)	55, 1238, 1567, 2357, 2369, 2480
BseMI	GCAATG	2 cut(s)	2175, 2442
BseMII	CTCAG	6 cut(s)	738, 971, 1488, 1722, 1871, 2280
BseNI	ACTGG	8 cut(s)	323, 607, 1074, 1208, 1485, 2203, 2397, 2446
BseRI	GAGGAG	4 cut(s)	378, 704, 887, 997
BseYI	CCCAGC	2 cut(s)	101, 2339
BsgI	GTGCAG	5 cut(s)	76, 324, 450, 1619, 1857
Bsh1236I	CGCG	2 cut(s)	141, 1458
BshFI	GGCC	8 cut(s)	203, 286, 1073, 1206, 1227, 1754, 2056, 2162
BshNI	GGYRCC	1 cut(s)	71
BsiHKCI	CYCGRG	1 cut(s)	1701
BsiSI	CCGG	6 cut(s)	69, 524, 638, 1367, 1412, 2589
BslFI	GGGAC	2 cut(s)	1859, 2640
BslI	CCNNNNNNNGG	6 cut(s)	55, 1238, 1567, 2357, 2369, 2480
BsmAI	GTCTC	5 cut(s)	219, 546, 623, 2468, 2656
BsmFI	GGGAC	2 cut(s)	1859, 2640
BsmI	GAATGC	1 cut(s)	948
BsnI	GGCC	8 cut(s)	203, 286, 1073, 1206, 1227, 1754, 2056, 2162
Bso31I	GGTCTC	1 cut(s)	2468
BsoBI	CYCGRG	1 cut(s)	1701
Bsp119I	TTCGAA	1 cut(s)	82
Bsp13I	TCCGGA	1 cut(s)	523
Bsp1407I	TGTACA	1 cut(s)	1891
Bsp143I	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1711, 2269
Bsp19I	CCATGG	1 cut(s)	1755
BspACI	CCGC	5 cut(s)	5, 1156, 1229, 1458, 2649
BspANI	GGCC	8 cut(s)	203, 286, 1073, 1206, 1227, 1754, 2056, 2162
BspCNI	CTCAG	6 cut(s)	739, 972, 1489, 1723, 1872, 2281
BspEI	TCCGGA	1 cut(s)	523
BspFNI	CGCG	2 cut(s)	141, 1458
BspLI	GGNNCC	3 cut(s)	73, 204, 2362
BspMAI	CTGCAG	3 cut(s)	1846, 2086, 2371
BspMI	ACCTGC	1 cut(s)	2360
BspOI	GCTAGC	1 cut(s)	672
BspPI	GGATC	4 cut(s)	515, 1457, 1487, 2277
BspT104I	TTCGAA	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	71
BspTI	CTTAAG	1 cut(s)	2273
BspTNI	GGTCTC	1 cut(s)	2468
BsrDI	GCAATG	2 cut(s)	2175, 2442
BsrGI	TGTACA	1 cut(s)	1891
BsrI	ACTGG	8 cut(s)	323, 607, 1074, 1208, 1485, 2203, 2397, 2446
BssECI	CCNNGG	8 cut(s)	31, 186, 1061, 1303, 1333, 1755, 1827, 2657
BssMI	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1711, 2269
BssNI	GRCGYC	2 cut(s)	72, 1256
BssSI	CACGAG	1 cut(s)	1833
BssT1I	CCWWGG	3 cut(s)	1303, 1755, 1827
Bst2BI	CACGAG	1 cut(s)	1833
Bst2UI	CCWGG	7 cut(s)	434, 1014, 1063, 1233, 1650, 2103, 2659
Bst4CI	ACNGT	6 cut(s)	199, 634, 699, 1124, 2513, 2574
Bst6I	CTCTTC	2 cut(s)	138, 2410
BstACI	GRCGYC	2 cut(s)	72, 1256
BstAFI	CTTAAG	1 cut(s)	2273
BstAUI	TGTACA	1 cut(s)	1891
BstBAI	YACGTR	2 cut(s)	393, 1031
BstBI	TTCGAA	1 cut(s)	82
BstC8I	GCNNGC	8 cut(s)	670, 851, 966, 1184, 1229, 1364, 1902, 2637
BstDSI	CCRYGG	1 cut(s)	1755
BstENI	CCTNNNNNAGG	1 cut(s)	1565
BstF5I	GGATG	8 cut(s)	36, 95, 1324, 1635, 2032, 2323, 2362, 2657
BstFNI	CGCG	2 cut(s)	141, 1458
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	4 cut(s)	74, 141, 849, 1458
BstKTI	GATC	9 cut(s)	523, 721, 1057, 1129, 1465, 1495, 1522, 1714, 2272
BstMAI	GTCTC	5 cut(s)	219, 546, 623, 2468, 2656
BstMBI	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1711, 2269
BstNI	CCWGG	7 cut(s)	434, 1014, 1063, 1233, 1650, 2103, 2659
BstNSI	RCATGY	1 cut(s)	1366
BstSFI	CTRYAG	4 cut(s)	1534, 1842, 2082, 2367
BstSNI	TACGTA	1 cut(s)	393
BstUI	CGCG	2 cut(s)	141, 1458
BstV2I	GAAGAC	1 cut(s)	906
BstX2I	RGATCY	2 cut(s)	520, 2269
BstXI	CCANNNNNNTGG	4 cut(s)	1013, 2170, 2305, 2516
BstYI	RGATCY	2 cut(s)	520, 2269
BsuI	GTATCC	1 cut(s)	1536
BsuRI	GGCC	8 cut(s)	203, 286, 1073, 1206, 1227, 1754, 2056, 2162
BtgI	CCRYGG	1 cut(s)	1755
BtsCI	GGATG	8 cut(s)	36, 95, 1324, 1635, 2032, 2323, 2362, 2657
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	8 cut(s)	112, 204, 316, 1081, 1129, 1215, 2196, 2390
BveI	ACCTGC	1 cut(s)	2360
Cac8I	GCNNGC	8 cut(s)	670, 851, 966, 1184, 1229, 1364, 1902, 2637
CaiI	CAGNNNCTG	1 cut(s)	1448
CfoI	GCGC	4 cut(s)	74, 141, 849, 1458
Cfr13I	GGNCC	6 cut(s)	58, 202, 1205, 1226, 2054, 2360
CseI	GACGC	2 cut(s)	1103, 1245
CsiI	ACCWGGT	1 cut(s)	2101
Csp6I	GTAC	6 cut(s)	267, 1780, 1892, 2348, 2468, 2570
CspCI	CAANNNNNGTGG	2 cut(s)	1602, 1637
CviAII	CATG	8 cut(s)	779, 1363, 1417, 1684, 1718, 1756, 1982, 2247
CviQI	GTAC	6 cut(s)	267, 1780, 1892, 2348, 2468, 2570
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	9 cut(s)	522, 720, 1056, 1128, 1464, 1494, 1521, 1713, 2271
DpnII	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1711, 2269
DraIII	CACNNNGTG	1 cut(s)	2105
Eam1104I	CTCTTC	2 cut(s)	138, 2410
EarI	CTCTTC	2 cut(s)	138, 2410
EciI	GGCGGA	2 cut(s)	20, 2664
Eco105I	TACGTA	1 cut(s)	393
Eco130I	CCWWGG	3 cut(s)	1303, 1755, 1827
Eco31I	GGTCTC	1 cut(s)	2468
Eco32I	GATATC	2 cut(s)	1330, 1989
Eco47I	GGWCC	2 cut(s)	58, 2360
Eco57I	CTGAAG	5 cut(s)	1455, 1683, 1694, 1962, 2573
Eco72I	CACGTG	1 cut(s)	1031
Eco88I	CYCGRG	1 cut(s)	1701
EcoNI	CCTNNNNNAGG	1 cut(s)	1565
EcoO109I	RGGNCCY	2 cut(s)	58, 2054
EcoRI	GAATTC	2 cut(s)	84, 1726
EcoRII	CCWGG	7 cut(s)	432, 1012, 1061, 1231, 1648, 2101, 2657
EcoRV	GATATC	2 cut(s)	1330, 1989
EcoT14I	CCWWGG	3 cut(s)	1303, 1755, 1827
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
ErhI	CCWWGG	3 cut(s)	1303, 1755, 1827
FaeI	CATG	8 cut(s)	782, 1366, 1420, 1687, 1721, 1759, 1985, 2250
FalI	AAGNNNNNCTT	8 cut(s)	47, 79, 717, 749, 861, 893, 1101, 1133
FaqI	GGGAC	2 cut(s)	1859, 2640
FatI	CATG	8 cut(s)	778, 1362, 1416, 1683, 1717, 1755, 1981, 2246
FauI	CCCGC	1 cut(s)	1236
FbaI	TGATCA	3 cut(s)	1126, 1519, 1711
FokI	GGATG	8 cut(s)	23, 82, 1331, 1642, 2039, 2330, 2369, 2664
FspBI	CTAG	7 cut(s)	252, 669, 752, 1040, 1424, 1785, 2606
GlaI	GCGC	4 cut(s)	73, 140, 848, 1457
GsaI	CCCAGC	2 cut(s)	105, 2343
GsuI	CTGGAG	7 cut(s)	624, 647, 1502, 1829, 2060, 2463, 2680
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	8 cut(s)	203, 286, 1073, 1206, 1227, 1754, 2056, 2162
HapII	CCGG	6 cut(s)	69, 524, 638, 1367, 1412, 2589
HgaI	GACGC	2 cut(s)	1103, 1245
HhaI	GCGC	4 cut(s)	74, 141, 849, 1458
Hin1I	GRCGYC	2 cut(s)	72, 1256
Hin1II	CATG	8 cut(s)	782, 1366, 1420, 1687, 1721, 1759, 1985, 2250
Hin6I	GCGC	4 cut(s)	72, 139, 847, 1456
HinP1I	GCGC	4 cut(s)	72, 139, 847, 1456
HincII	GTYRAC	2 cut(s)	757, 2204
HindII	GTYRAC	2 cut(s)	757, 2204
HpaII	CCGG	6 cut(s)	69, 524, 638, 1367, 1412, 2589
HphI	GGTGA	7 cut(s)	251, 1472, 1582, 1771, 1899, 2195, 2263
Hpy166II	GTNNAC	7 cut(s)	242, 643, 757, 1028, 1036, 1782, 2204
Hpy8I	GTNNAC	7 cut(s)	242, 643, 757, 1028, 1036, 1782, 2204
HpyCH4III	ACNGT	6 cut(s)	199, 634, 699, 1124, 2513, 2574
HpyCH4IV	ACGT	3 cut(s)	392, 429, 1030
HpySE526I	ACGT	3 cut(s)	392, 429, 1030
Hsp92I	GRCGYC	2 cut(s)	72, 1256
Hsp92II	CATG	8 cut(s)	782, 1366, 1420, 1687, 1721, 1759, 1985, 2250
HspAI	GCGC	4 cut(s)	72, 139, 847, 1456
KasI	GGCGCC	1 cut(s)	71
Kpn2I	TCCGGA	1 cut(s)	523
Ksp22I	TGATCA	3 cut(s)	1126, 1519, 1711
Kzo9I	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1711, 2269
LmnI	GCTCC	8 cut(s)	16, 121, 505, 514, 568, 691, 874, 1937
LweI	GCATC	6 cut(s)	45, 169, 918, 987, 1186, 2200
MabI	ACCWGGT	1 cut(s)	2101
MaeI	CTAG	7 cut(s)	252, 669, 752, 1040, 1424, 1785, 2606
MaeII	ACGT	3 cut(s)	392, 429, 1030
MaeIII	GTNAC	3 cut(s)	388, 2374, 2383
MalI	GATC	9 cut(s)	522, 720, 1056, 1128, 1464, 1494, 1521, 1713, 2271
MboI	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1711, 2269
MflI	RGATCY	2 cut(s)	520, 2269
Mly113I	GGCGCC	1 cut(s)	72
MlyI	GAGTC	2 cut(s)	2371, 2538
MmeI	TCCRAC	3 cut(s)	687, 1219, 1431
MroI	TCCGGA	1 cut(s)	523
MroXI	GAANNNNTTC	3 cut(s)	232, 312, 946
MseI	TTAA	8 cut(s)	155, 1097, 1139, 1149, 1388, 1694, 2274, 2561
MslI	CAYNNNNRTG	3 cut(s)	2168, 2245, 2514
MspA1I	CMGCKG	4 cut(s)	1156, 1841, 2288, 2579
MspCI	CTTAAG	1 cut(s)	2273
MspI	CCGG	6 cut(s)	69, 524, 638, 1367, 1412, 2589
Mva1269I	GAATGC	1 cut(s)	948
MvaI	CCWGG	7 cut(s)	434, 1014, 1063, 1233, 1650, 2103, 2659
MvnI	CGCG	2 cut(s)	141, 1458
NarI	GGCGCC	1 cut(s)	72
NciI	CCSGG	3 cut(s)	69, 1368, 1412
NcoI	CCATGG	1 cut(s)	1755
NdeII	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1711, 2269
NheI	GCTAGC	1 cut(s)	668
NlaIII	CATG	8 cut(s)	782, 1366, 1420, 1687, 1721, 1759, 1985, 2250
NlaIV	GGNNCC	3 cut(s)	73, 204, 2362
NmeAIII	GCCGAG	2 cut(s)	12, 211
NmuCI	GTSAC	1 cut(s)	2374
NspI	RCATGY	1 cut(s)	1366
NspV	TTCGAA	1 cut(s)	82
OliI	CACNNNNGTG	1 cut(s)	2514
PaeI	GCATGC	1 cut(s)	1366
PaqCI	CACCTGC	1 cut(s)	2360
PcsI	WCGNNNNNNNCGW	1 cut(s)	900
PctI	GAATGC	1 cut(s)	948
PdmI	GAANNNNTTC	3 cut(s)	232, 312, 946
PflFI	GACNNNGTC	1 cut(s)	493
PfoI	TCCNGGA	1 cut(s)	432
PleI	GAGTC	2 cut(s)	2371, 2537
PluTI	GGCGCC	1 cut(s)	75
PmaCI	CACGTG	1 cut(s)	1031
PmlI	CACGTG	1 cut(s)	1031
PpsI	GAGTC	2 cut(s)	2371, 2537
Ppu21I	YACGTR	2 cut(s)	393, 1031
PpuMI	RGGWCCY	1 cut(s)	58
Psp5II	RGGWCCY	1 cut(s)	58
Psp6I	CCWGG	7 cut(s)	432, 1012, 1061, 1231, 1648, 2101, 2657
PspCI	CACGTG	1 cut(s)	1031
PspFI	CCCAGC	2 cut(s)	101, 2339
PspGI	CCWGG	7 cut(s)	432, 1012, 1061, 1231, 1648, 2101, 2657
PspN4I	GGNNCC	3 cut(s)	73, 204, 2362
PspPI	GGNCC	6 cut(s)	58, 202, 1205, 1226, 2054, 2360
PspPPI	RGGWCCY	1 cut(s)	58
PsrI	GAACNNNNNNTAC	2 cut(s)	445, 477
PstI	CTGCAG	3 cut(s)	1846, 2086, 2371
PstNI	CAGNNNCTG	1 cut(s)	1448
PsuI	RGATCY	2 cut(s)	520, 2269
PsyI	GACNNNGTC	1 cut(s)	493
PvuII	CAGCTG	3 cut(s)	1841, 2288, 2579
RsaI	GTAC	6 cut(s)	268, 1781, 1893, 2349, 2469, 2571
RsaNI	GTAC	6 cut(s)	267, 1780, 1892, 2348, 2468, 2570
RseI	CAYNNNNRTG	3 cut(s)	2168, 2245, 2514
SaqAI	TTAA	8 cut(s)	155, 1097, 1139, 1149, 1388, 1694, 2274, 2561
Sau3AI	GATC	9 cut(s)	520, 718, 1054, 1126, 1462, 1492, 1519, 1711, 2269
Sau96I	GGNCC	6 cut(s)	58, 202, 1205, 1226, 2054, 2360
SchI	GAGTC	2 cut(s)	2371, 2538
SexAI	ACCWGGT	1 cut(s)	2101
SfaNI	GCATC	6 cut(s)	45, 169, 918, 987, 1186, 2200
SfcI	CTRYAG	4 cut(s)	1534, 1842, 2082, 2367
SfoI	GGCGCC	1 cut(s)	73
SfuI	TTCGAA	1 cut(s)	82
SinI	GGWCC	2 cut(s)	58, 2360
SmiMI	CAYNNNNRTG	3 cut(s)	2168, 2245, 2514
SmlI	CTYRAG	5 cut(s)	216, 358, 584, 2273, 2594
SmoI	CTYRAG	5 cut(s)	216, 358, 584, 2273, 2594
SnaBI	TACGTA	1 cut(s)	393
SphI	GCATGC	1 cut(s)	1366
SsiI	CCGC	5 cut(s)	5, 1156, 1229, 1458, 2649
SspDI	GGCGCC	1 cut(s)	71
SspMI	CTAG	7 cut(s)	252, 669, 752, 1040, 1424, 1785, 2606
StyI	CCWWGG	3 cut(s)	1303, 1755, 1827
TaaI	ACNGT	6 cut(s)	199, 634, 699, 1124, 2513, 2574
TaiI	ACGT	3 cut(s)	395, 432, 1033
TaqI	TCGA	3 cut(s)	82, 175, 1917
TatI	WGTACW	1 cut(s)	1891
Tru1I	TTAA	8 cut(s)	155, 1097, 1139, 1149, 1388, 1694, 2274, 2561
Tru9I	TTAA	8 cut(s)	155, 1097, 1139, 1149, 1388, 1694, 2274, 2561
TscAI	CASTG	8 cut(s)	112, 204, 323, 1081, 1129, 1215, 2203, 2397
TseFI	GTSAC	1 cut(s)	2374
Tsp45I	GTSAC	1 cut(s)	2374
TspDTI	ATGAA	7 cut(s)	520, 912, 1101, 1335, 1443, 2312, 2388
TspGWI	ACGGA	1 cut(s)	581
TspRI	CASTG	8 cut(s)	112, 204, 323, 1081, 1129, 1215, 2203, 2397
Tth111I	GACNNNGTC	1 cut(s)	493
Vha464I	CTTAAG	1 cut(s)	2273
VpaK11BI	GGWCC	2 cut(s)	58, 2360
XagI	CCTNNNNNAGG	1 cut(s)	1565
XapI	RAATTY	3 cut(s)	84, 1286, 1726
XbaI	TCTAGA	1 cut(s)	251
XceI	RCATGY	1 cut(s)	1366
XmnI	GAANNNNTTC	3 cut(s)	232, 312, 946
XspI	CTAG	7 cut(s)	252, 669, 752, 1040, 1424, 1785, 2606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.